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PRJEB1986: zebrafish developmental stages transcriptome

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Results for plag1+plagx

Z-value: 0.94

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Transcription factors associated with plag1+plagx

Gene Symbol Gene ID Gene Info
plagx
ENSDARG00000036855 pleiomorphic adenoma gene X
plag1
ENSDARG00000051926 pleiomorphic adenoma gene 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
plagxdr11_v1_chr23_+_32011768_32011768-0.724.8e-04Click!
plag1dr11_v1_chr7_+_58736889_587368890.474.1e-02Click!

Activity profile of plag1+plagx motif

Sorted Z-values of plag1+plagx motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_22310919 8.71 ENSDART00000108719
crygm2d10
crystallin, gamma M2d10
chr1_+_49568335 4.78 ENSDART00000142957
col17a1a
collagen, type XVII, alpha 1a
chr8_-_25247284 3.74 ENSDART00000132697
gnat2
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
chr7_+_568819 3.65 ENSDART00000173716
nrxn2b
neurexin 2b
chr19_-_3193912 3.24 ENSDART00000133159
si:ch211-133n4.6
si:ch211-133n4.6
chr12_+_16440708 3.16 ENSDART00000113810
ankrd1b
ankyrin repeat domain 1b (cardiac muscle)
chr12_-_25916530 2.74 ENSDART00000186386
sncgb
synuclein, gamma b (breast cancer-specific protein 1)
chr16_-_36798783 2.45 ENSDART00000145697
calb1
calbindin 1
chr24_-_26383978 2.04 ENSDART00000031426
skilb
SKI-like proto-oncogene b
chr7_-_38477235 1.79 ENSDART00000084355
zgc:165481
zgc:165481
chr4_+_19534833 1.73 ENSDART00000140028
lrrc4.1
leucine rich repeat containing 4.1
chr2_+_51783120 1.48 ENSDART00000177559
crygn1
crystallin, gamma N1
chr20_-_14665002 1.41 ENSDART00000152816
scrn2
secernin 2
chr4_+_9400012 1.26 ENSDART00000191960
tmtc1
transmembrane and tetratricopeptide repeat containing 1
chr4_+_6572364 1.25 ENSDART00000122574
ppp1r3aa
protein phosphatase 1, regulatory subunit 3Aa
chr24_+_35564668 1.24 ENSDART00000122734
cebpd
CCAAT/enhancer binding protein (C/EBP), delta
chr14_-_2209742 1.20 ENSDART00000054889
pcdh2ab5
protocadherin 2 alpha b 5
chr1_+_47446032 1.19 ENSDART00000126904
ENSDART00000007262
gja8b
gap junction protein alpha 8 paralog b
chr19_-_8940068 1.17 ENSDART00000043507
ciarta
circadian associated repressor of transcription a
chr23_+_44732863 1.13 ENSDART00000160044
ENSDART00000172268
atp1b2a
ATPase Na+/K+ transporting subunit beta 2a
chr22_-_4798738 0.92 ENSDART00000114465
zgc:195170
zgc:195170
chr8_+_25247245 0.91 ENSDART00000045798
ampd2b
adenosine monophosphate deaminase 2b
chr6_-_35401282 0.86 ENSDART00000127612
rgs5a
regulator of G protein signaling 5a
chr21_+_7823146 0.81 ENSDART00000030579
crhbp
corticotropin releasing hormone binding protein
chr12_+_22657925 0.80 ENSDART00000153048
si:dkey-219e21.4
si:dkey-219e21.4
chr2_+_13069168 0.79 ENSDART00000192832
prkag2b
protein kinase, AMP-activated, gamma 2 non-catalytic subunit b
chr19_+_43684376 0.79 ENSDART00000051723
si:ch211-193k19.1
si:ch211-193k19.1
chr7_-_41403022 0.79 ENSDART00000174285
BX322787.1

chr24_-_21490628 0.68 ENSDART00000181546
atp8a2
ATPase phospholipid transporting 8A2
chr22_+_8551813 0.67 ENSDART00000129690
zmp:0000000984
zmp:0000000984
chr12_-_46112892 0.66 ENSDART00000187128
ENSDART00000114268
zgc:153932
zgc:153932
chr19_-_32944050 0.63 ENSDART00000137611
azin1b
antizyme inhibitor 1b
chr5_-_23878809 0.62 ENSDART00000160603
si:ch211-135f11.4
si:ch211-135f11.4
chr16_+_11834516 0.49 ENSDART00000146611
cxcr3.3
chemokine (C-X-C motif) receptor 3, tandem duplicate 3
chr12_-_30345444 0.40 ENSDART00000152985
vwa2
von Willebrand factor A domain containing 2
chr10_-_36240806 0.37 ENSDART00000171468
or109-2
odorant receptor, family D, subfamily 109, member 2
chr23_+_30859086 0.37 ENSDART00000053661
zgc:198371
zgc:198371
chr3_+_18795570 0.34 ENSDART00000042368
fahd1
fumarylacetoacetate hydrolase domain containing 1
chr14_-_1958994 0.26 ENSDART00000161783
pcdh2g5
protocadherin 2 gamma 5
chr14_-_33177935 0.19 ENSDART00000180583
ENSDART00000078856
dlg3
discs, large homolog 3 (Drosophila)
chr6_+_52911338 0.17 ENSDART00000065710
si:dkeyp-3f10.14
si:dkeyp-3f10.14
chr19_+_37620342 0.14 ENSDART00000158960
thsd7aa
thrombospondin, type I, domain containing 7Aa
chr9_+_22466218 0.08 ENSDART00000131214
dgkg
diacylglycerol kinase, gamma
chr19_+_11260143 0.03 ENSDART00000187771
si:ch73-171o20.1
si:ch73-171o20.1
chr21_+_5801105 0.01 ENSDART00000151225
ENSDART00000184487
ccng2
cyclin G2

Network of associatons between targets according to the STRING database.

First level regulatory network of plag1+plagx

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.4 GO:0099509 regulation of presynaptic cytosolic calcium ion concentration(GO:0099509) regulation of long-term synaptic potentiation(GO:1900271)
0.4 3.7 GO:0050907 detection of chemical stimulus involved in sensory perception(GO:0050907)
0.3 0.8 GO:0002792 negative regulation of peptide secretion(GO:0002792) negative regulation of peptide hormone secretion(GO:0090278)
0.1 2.7 GO:0071542 dopaminergic neuron differentiation(GO:0071542)
0.1 0.6 GO:1902269 polyamine transport(GO:0015846) polyamine transmembrane transport(GO:1902047) regulation of polyamine transmembrane transport(GO:1902267) positive regulation of polyamine transmembrane transport(GO:1902269)
0.1 2.0 GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway(GO:0030512) negative regulation of cellular response to transforming growth factor beta stimulus(GO:1903845)
0.1 0.9 GO:0032264 IMP salvage(GO:0032264)
0.1 8.6 GO:0002088 lens development in camera-type eye(GO:0002088)
0.1 1.3 GO:0010962 regulation of glycogen biosynthetic process(GO:0005979) regulation of glucan biosynthetic process(GO:0010962)
0.1 1.1 GO:0036376 cellular potassium ion homeostasis(GO:0030007) sodium ion export from cell(GO:0036376) sodium ion export(GO:0071436)
0.0 4.8 GO:0008544 epidermis development(GO:0008544)
0.0 1.2 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.8 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.7 GO:0045332 phospholipid translocation(GO:0045332)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.7 GO:0001917 photoreceptor inner segment(GO:0001917)
0.1 5.2 GO:0043679 axon terminus(GO:0043679)
0.1 1.1 GO:0005890 sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533)
0.1 1.2 GO:0005922 connexon complex(GO:0005922)
0.1 1.3 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.1 0.8 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 5.2 GO:0031012 extracellular matrix(GO:0031012)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.7 GO:1903136 cuprous ion binding(GO:1903136)
0.8 2.4 GO:0005499 vitamin D binding(GO:0005499)
0.8 3.2 GO:0061629 RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629)
0.3 1.4 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.2 1.2 GO:0055077 gap junction hemi-channel activity(GO:0055077)
0.1 10.0 GO:0005212 structural constituent of eye lens(GO:0005212)
0.1 3.7 GO:0031683 G-protein beta/gamma-subunit complex binding(GO:0031683)
0.1 0.6 GO:0042978 ornithine decarboxylase activator activity(GO:0042978)
0.1 1.3 GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity(GO:0004169)
0.1 1.3 GO:2001069 glycogen binding(GO:2001069)
0.1 0.9 GO:0003876 AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623)
0.1 0.3 GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823)
0.1 1.1 GO:0001671 ATPase activator activity(GO:0001671)
0.0 5.4 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 2.0 GO:0046332 SMAD binding(GO:0046332)
0.0 0.8 GO:0016208 AMP binding(GO:0016208)
0.0 0.8 GO:0017046 peptide hormone binding(GO:0017046)
0.0 0.5 GO:0019957 C-C chemokine binding(GO:0019957)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.7 PID CONE PATHWAY Visual signal transduction: Cones
0.0 1.2 PID IL6 7 PATHWAY IL6-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.7 REACTOME G PROTEIN ACTIVATION Genes involved in G-protein activation
0.0 1.2 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.0 0.2 REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS Genes involved in Ionotropic activity of Kainate Receptors
0.0 0.7 REACTOME ION TRANSPORT BY P TYPE ATPASES Genes involved in Ion transport by P-type ATPases