PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
phox2bb Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000091029	paired like homeobox 2Bb

Gene	Promoter	Pearson corr. coef.	P-value	Plot
phox2bb	dr11_v1_chr14_-_17068712_17068712	0.78	7.8e-05	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_50608099 Show fit	0.59	ENSDART00000185805 ENSDART00000111135	neurod6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuronal differentiation 6b
chr2_+_2223837 Show fit	0.56	ENSDART00000101038 ENSDART00000129354	tmie Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane inner ear
chr12_-_35054354 Show fit	0.44	ENSDART00000075351	zgc:112285 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112285
chr16_-_12173554 Show fit	0.40	ENSDART00000110567 ENSDART00000155935	clstn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calsyntenin 3
chr17_+_15433671 Show fit	0.39	ENSDART00000149568	fabp7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid binding protein 7, brain, a
chr17_+_15433518 Show fit	0.35	ENSDART00000026180	fabp7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid binding protein 7, brain, a
chr6_-_11768198 Show fit	0.29	ENSDART00000183463	march7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane-associated ring finger (C3HC4) 7
chr2_-_16216568 Show fit	0.25	ENSDART00000173758	arhgef4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho guanine nucleotide exchange factor (GEF) 4
chr16_+_46111849 Show fit	0.23	ENSDART00000172232	sv2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptic vesicle glycoprotein 2A
chr21_-_22635245 Show fit	0.22	ENSDART00000115224 ENSDART00000101782	nectin1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nectin cell adhesion molecule 1a
chr10_-_27049170 Show fit	0.22	ENSDART00000143451	cnih2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cornichon family AMPA receptor auxiliary protein 2
chr22_+_23359369 Show fit	0.18	ENSDART00000170886	dennd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 1B
chr17_+_20589553 Show fit	0.16	ENSDART00000154447	si:ch73-288o11.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-288o11.4
chr14_-_413273 Show fit	0.15	ENSDART00000163976 ENSDART00000179907	FAT4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FAT atypical cadherin 4
chr14_-_4556896 Show fit	0.15	ENSDART00000044678 ENSDART00000192863	GABRA2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-aminobutyric acid type A receptor alpha2 subunit
chr19_+_43297546 Show fit	0.14	ENSDART00000168002	laptm5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysosomal protein transmembrane 5
chr4_-_9891874 Show fit	0.12	ENSDART00000067193	adm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adrenomedullin 2a
chr9_-_43538328 Show fit	0.11	ENSDART00000140526	znf385b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 385B
chr3_+_23029484 Show fit	0.10	ENSDART00000187900	nags Links NCBI UniProt ZFIN ENSEMBL Google Show fit	N-acetylglutamate synthase
chr16_-_12173399 Show fit	0.10	ENSDART00000142574	clstn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calsyntenin 3
chr6_+_11249706 Show fit	0.10	ENSDART00000186547 ENSDART00000193287	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr11_-_2838699 Show fit	0.09	ENSDART00000066189	lhfpl5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LHFPL tetraspan subfamily member 5a
chr8_-_33381913 Show fit	0.08	ENSDART00000076420	lmx1bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM homeobox transcription factor 1, beta b
chr25_-_13490744 Show fit	0.08	ENSDART00000056721	ldhd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lactate dehydrogenase D
chr6_+_11250033 Show fit	0.07	ENSDART00000065411 ENSDART00000132677	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr5_-_30620625 Show fit	0.07	ENSDART00000098273	tcnl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcobalamin like
chr5_-_63302944 Show fit	0.07	ENSDART00000047110	gsnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gelsolin b
chr7_+_38811800 Show fit	0.07	ENSDART00000052322	zgc:110699 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:110699
chr22_+_508290 Show fit	0.06	ENSDART00000135403	nuak2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NUAK family, SNF1-like kinase, 2
chr17_+_22577472 Show fit	0.05	ENSDART00000045099	yipf4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Yip1 domain family, member 4
chr15_-_39955785 Show fit	0.05	ENSDART00000154556	msh5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mutS homolog 5
chr3_-_26787430 Show fit	0.05	ENSDART00000087047	rab40c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB40c, member RAS oncogene family
chr9_+_54039006 Show fit	0.05	ENSDART00000112441	tlr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	toll-like receptor 7
chr7_+_21272833 Show fit	0.04	ENSDART00000052942	serpinh2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine (or cysteine) peptidase inhibitor, clade H, member 2
chr17_-_21418340 Show fit	0.04	ENSDART00000007021	atp6v1ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase, H+ transporting, lysosomal, V1 subunit B, member a
chr1_-_31534089 Show fit	0.04	ENSDART00000007770	lbx1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ladybird homeobox 1b
chr5_+_71802014 Show fit	0.04	ENSDART00000124939 ENSDART00000097164	LHX3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM homeobox 3
chr14_-_470505 Show fit	0.04	ENSDART00000067147	ANKRD50 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 50
chr13_+_33268657 Show fit	0.03	ENSDART00000002095	tmem39b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 39B
chr25_-_4525081 Show fit	0.03	ENSDART00000184347	pidd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	p53-induced death domain protein 1
chr6_+_11250316 Show fit	0.03	ENSDART00000137122	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr17_+_50524573 Show fit	0.03	ENSDART00000187974	CR382385.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr20_-_9095105 Show fit	0.03	ENSDART00000140792	oma1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OMA1 zinc metallopeptidase
chr15_-_14552101 Show fit	0.03	ENSDART00000171169	numbl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	numb homolog (Drosophila)-like
chr22_+_19366866 Show fit	0.03	ENSDART00000137301	si:dkey-21e2.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-21e2.12
chr9_-_9415000 Show fit	0.02	ENSDART00000146210	si:ch211-214p13.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-214p13.9
chr9_-_32177117 Show fit	0.02	ENSDART00000078568	sf3b1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	splicing factor 3b, subunit 1
chr23_+_16638639 Show fit	0.01	ENSDART00000143545	snphb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntaphilin b
chr15_-_22074315 Show fit	0.01	ENSDART00000149830	drd2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dopamine receptor D2a
chr8_-_53044300 Show fit	0.01	ENSDART00000191653	nr6a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 6, group A, member 1a
chr21_+_25236297 Show fit	0.01	ENSDART00000112783	tmem45b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 45B
chr21_+_27513859 Show fit	0.01	ENSDART00000065420	pacs1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphofurin acidic cluster sorting protein 1a
chr22_+_2751887 Show fit	0.00	ENSDART00000133652	si:dkey-20i20.11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-20i20.11
chr8_-_49728590 Show fit	0.00	ENSDART00000135714 ENSDART00000138810 ENSDART00000098319	gkap1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G kinase anchoring protein 1

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0044650	virion attachment to host cell(GO:0019062) adhesion of symbiont to host(GO:0044406) adhesion of symbiont to host cell(GO:0044650)
0.1	0.5	GO:0051965	positive regulation of synapse assembly(GO:0051965)
0.0	0.6	GO:0060088	auditory receptor cell stereocilium organization(GO:0060088)
0.0	0.1	GO:0006089	lactate metabolic process(GO:0006089)
0.0	0.1	GO:0006526	arginine biosynthetic process(GO:0006526)
0.0	0.2	GO:0044805	late nucleophagy(GO:0044805)
0.0	0.0	GO:0034154	toll-like receptor 7 signaling pathway(GO:0034154)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	GO:0005504	fatty acid binding(GO:0005504)
0.0	0.1	GO:0034618	arginine binding(GO:0034618)