PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
osr2 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000038006	odd-skipped related transciption factor 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
osr2	dr11_v1_chr16_-_54405037_54405037	-0.16	5.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_6617401 Show fit	0.48	ENSDART00000060532	zgc:110796 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:110796
chr6_+_54576520 Show fit	0.44	ENSDART00000093199 ENSDART00000127519 ENSDART00000157142	tead3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TEA domain family member 3 b
chr1_+_44826367 Show fit	0.27	ENSDART00000146962	STX3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:165520
chr16_-_13612650 Show fit	0.23	ENSDART00000080372	dbpb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	D site albumin promoter binding protein b
chr8_+_10835456 Show fit	0.18	ENSDART00000151388	mapk13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitogen-activated protein kinase 13
chr11_+_31285127 Show fit	0.17	ENSDART00000160154	si:dkey-238i5.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-238i5.2
chr25_-_19395476 Show fit	0.16	ENSDART00000182622	map1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule-associated protein 1Ab
chr13_+_30696286 Show fit	0.16	ENSDART00000192411	cxcl18a.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-X-C motif) ligand 18a, duplicate 1
chr19_-_9503473 Show fit	0.16	ENSDART00000091615	iffo1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	intermediate filament family orphan 1a
chr20_-_26866111 Show fit	0.14	ENSDART00000077767	mylk4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin light chain kinase family, member 4b
chr14_+_8504410 Show fit	0.13	ENSDART00000123364	vegfba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vascular endothelial growth factor Ba
chr7_-_17771166 Show fit	0.13	ENSDART00000173620	si:dkey-106g10.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-106g10.7
chr23_-_9925568 Show fit	0.12	ENSDART00000081268	si:ch211-220i18.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-220i18.4
chr23_-_46040618 Show fit	0.12	ENSDART00000161415	CABZ01080918.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_32958505 Show fit	0.12	ENSDART00000147374 ENSDART00000136919	casp6l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	caspase 6, apoptosis-related cysteine peptidase, like 1
chr19_-_6134802 Show fit	0.11	ENSDART00000140051	cica Links NCBI UniProt ZFIN ENSEMBL Google Show fit	capicua transcriptional repressor a
chr2_+_3986083 Show fit	0.11	ENSDART00000188979	mkxb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mohawk homeobox b
chr22_-_28871787 Show fit	0.10	ENSDART00000104828	gtpbp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GTP binding protein 2b
chr16_-_13680692 Show fit	0.09	ENSDART00000047452	ube2s Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin-conjugating enzyme E2S
chr13_-_27621246 Show fit	0.09	ENSDART00000102232	kcnq5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, KQT-like subfamily, member 5a
chr18_-_39200557 Show fit	0.08	ENSDART00000132367 ENSDART00000183672	si:ch211-235f12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit mapk6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-235f12.2 mitogen-activated protein kinase 6
chr1_+_44826593 Show fit	0.07	ENSDART00000162200	STX3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:165520
chr23_+_7379728 Show fit	0.07	ENSDART00000012194	gata5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GATA binding protein 5
chr25_-_19395156 Show fit	0.07	ENSDART00000155335	map1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule-associated protein 1Ab
chr22_-_5006801 Show fit	0.06	ENSDART00000106166	rx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinal homeobox gene 1
chr2_+_5446882 Show fit	0.05	ENSDART00000083260	dusp28 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dual specificity phosphatase 28
chr7_-_42206720 Show fit	0.05	ENSDART00000110907	itfg1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	integrin alpha FG-GAP repeat containing 1
chr8_+_48858132 Show fit	0.04	ENSDART00000124737 ENSDART00000079644	tp73 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tumor protein p73
chr14_+_29945070 Show fit	0.04	ENSDART00000185039	fam149a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 149 member A
chr8_-_22639794 Show fit	0.04	ENSDART00000188029	iqsec2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and Sec7 domain 2a
chr12_+_28856151 Show fit	0.04	ENSDART00000152969	nfe2l1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear factor, erythroid 2-like 1b
chr7_+_38090515 Show fit	0.04	ENSDART00000131387	cebpg Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CCAAT/enhancer binding protein (C/EBP), gamma
chr3_-_10751491 Show fit	0.03	ENSDART00000016351	zgc:112965 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112965
chr5_+_13373593 Show fit	0.03	ENSDART00000051668 ENSDART00000183883	ccl19a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-C motif) ligand 19a, tandem duplicate 2
chr23_+_24501918 Show fit	0.03	ENSDART00000078824	szrd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SUZ RNA binding domain containing 1
chr10_+_38512270 Show fit	0.03	ENSDART00000109752	serpinh1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a
chr23_-_36003282 Show fit	0.03	ENSDART00000103150	calcoco1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding and coiled-coil domain 1a
chr8_-_4100365 Show fit	0.02	ENSDART00000142846	cux2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cut-like homeobox 2b
chr21_-_40834413 Show fit	0.02	ENSDART00000148513	limk1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain kinase 1b
chr20_+_30490682 Show fit	0.01	ENSDART00000184871	myt1la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myelin transcription factor 1-like, a
chr6_+_46431848 Show fit	0.01	ENSDART00000181056 ENSDART00000144569 ENSDART00000064865 ENSDART00000133992	stau1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	staufen double-stranded RNA binding protein 1
chr18_-_45736 Show fit	0.01	ENSDART00000148373 ENSDART00000148950	gatm Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycine amidinotransferase (L-arginine:glycine amidinotransferase)
chr18_-_46010 Show fit	0.01	ENSDART00000052641	gatm Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycine amidinotransferase (L-arginine:glycine amidinotransferase)
chr2_-_48512450 Show fit	0.00	ENSDART00000160132	CR391991.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr20_-_29418620 Show fit	0.00	ENSDART00000172634	ryr3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ryanodine receptor 3
chr14_-_49992709 Show fit	0.00	ENSDART00000159988	fam193b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 193, member B

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0048618	post-embryonic foregut morphogenesis(GO:0048618)
0.0	0.1	GO:1904668	positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0	0.4	GO:0035329	hippo signaling(GO:0035329)
0.0	0.1	GO:0060754	mast cell chemotaxis(GO:0002551) regulation of mast cell chemotaxis(GO:0060753) positive regulation of mast cell chemotaxis(GO:0060754) mast cell migration(GO:0097531)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005172	vascular endothelial growth factor receptor binding(GO:0005172)
0.0	0.1	GO:0004687	myosin light chain kinase activity(GO:0004687)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID P38 GAMMA DELTA PATHWAY	Signaling mediated by p38-gamma and p38-delta

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME DSCAM INTERACTIONS	Genes involved in DSCAM interactions
0.0	0.3	REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS	Genes involved in Proteolytic cleavage of SNARE complex proteins