PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nr2f1b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000017168	nuclear receptor subfamily 2, group F, member 1b
nr2f5 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000033172	nuclear receptor subfamily 2, group F, member 5

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nr2f5	dr11_v1_chr16_+_46294337_46294337	0.19	4.3e-01	Click!
nr2f1b	dr11_v1_chr10_+_43797130_43797130	0.10	6.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_+_25581627 Show fit	0.30	ENSDART00000030229	cyp2p9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome P450, family 2, subfamily P, polypeptide 9
chr14_+_2487672 Show fit	0.26	ENSDART00000170629 ENSDART00000123063	fgf18a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor 18a
chr22_-_26834043 Show fit	0.24	ENSDART00000087202	si:dkey-44g23.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-44g23.5
chr19_-_48039400 Show fit	0.24	ENSDART00000166748 ENSDART00000165921	csf3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	colony stimulating factor 3 (granulocyte) b
chr11_+_6010177 Show fit	0.19	ENSDART00000170047 ENSDART00000022526 ENSDART00000161001 ENSDART00000188999	gtpbp3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GTP binding protein 3, mitochondrial
chr1_+_144284 Show fit	0.17	ENSDART00000064061	prozb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein Z, vitamin K-dependent plasma glycoprotein b
chr10_-_29831944 Show fit	0.17	ENSDART00000063923 ENSDART00000136264	zpr1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ZPR1 zinc finger
chr1_+_59154521 Show fit	0.17	ENSDART00000130089 ENSDART00000152456	soul5l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heme-binding protein soul5, like
chr19_+_26828502 Show fit	0.16	ENSDART00000183654 ENSDART00000126006 ENSDART00000185341	FP085398.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr22_+_37888249 Show fit	0.15	ENSDART00000076082	fetub Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fetuin B
chr25_+_1591964 Show fit	0.14	ENSDART00000093277	ppm1h Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1H
chr18_+_7073130 Show fit	0.14	ENSDART00000101216 ENSDART00000148947	si:dkey-88e18.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-88e18.2
chr23_+_36616717 Show fit	0.14	ENSDART00000042701 ENSDART00000192980	pip4k2ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma a
chr7_+_27251376 Show fit	0.13	ENSDART00000173521 ENSDART00000173962	sox6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SRY (sex determining region Y)-box 6
chr16_-_40155424 Show fit	0.13	ENSDART00000191763	BX470182.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_19517462 Show fit	0.12	ENSDART00000162027	CU571315.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_22003031 Show fit	0.12	ENSDART00000133627	si:rp71-1f1.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:rp71-1f1.5
chr2_+_58841181 Show fit	0.12	ENSDART00000164102	cirbpa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cold inducible RNA binding protein a
chr8_+_23711842 Show fit	0.11	ENSDART00000128783	ppardb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peroxisome proliferator-activated receptor delta b
chr24_-_21991770 Show fit	0.11	ENSDART00000147296	si:rp71-1f1.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:rp71-1f1.4
chr5_+_64856666 Show fit	0.10	ENSDART00000050863	zgc:101858 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:101858
chr2_-_9607879 Show fit	0.10	ENSDART00000056899	txndc12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thioredoxin domain containing 12 (endoplasmic reticulum)
chr2_+_16449627 Show fit	0.10	ENSDART00000005381	zgc:110269 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:110269
chr7_-_26446726 Show fit	0.10	ENSDART00000173607	zgc:172079 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:172079
chr4_-_13613148 Show fit	0.09	ENSDART00000067164 ENSDART00000111247	irf5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interferon regulatory factor 5
chr18_-_27316599 Show fit	0.09	ENSDART00000028294	zgc:56106 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:56106
chr24_+_37700259 Show fit	0.09	ENSDART00000066556	zmp:0000000624 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000000624
chr4_-_77120928 Show fit	0.08	ENSDART00000174154	CU467646.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_+_4474880 Show fit	0.08	ENSDART00000143528	si:dkey-83f18.14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-83f18.14
chr13_-_23007813 Show fit	0.08	ENSDART00000057638	hk1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hexokinase 1
chr7_+_29153018 Show fit	0.07	ENSDART00000138065	tmppe Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein with metallophosphoesterase domain
chr15_-_41756454 Show fit	0.07	ENSDART00000139498 ENSDART00000099302	ftr72 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	finTRIM family, member 72
chr20_-_16906623 Show fit	0.07	ENSDART00000012859 ENSDART00000171628	psma6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit alpha 6b
chr19_+_7938121 Show fit	0.07	ENSDART00000140053 ENSDART00000146649	si:dkey-266f7.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-266f7.5
chr4_-_2440175 Show fit	0.06	ENSDART00000058059	OSBPL8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	oxysterol binding protein like 8
chr13_+_24834199 Show fit	0.06	ENSDART00000101274	zgc:153981 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153981
chr4_-_71983381 Show fit	0.06	ENSDART00000169130	ftr64 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	finTRIM family, member 64
chr22_+_18316144 Show fit	0.06	ENSDART00000137985	gatad2ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GATA zinc finger domain containing 2Ab
chr13_+_50778187 Show fit	0.06	ENSDART00000159597	dntt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	deoxynucleotidyltransferase, terminal
chr19_+_5291935 Show fit	0.06	ENSDART00000141237	si:dkeyp-113d7.10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-113d7.10
chr11_-_34147205 Show fit	0.06	ENSDART00000173216	atp13a3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase 13A3
chr17_+_5351922 Show fit	0.06	ENSDART00000105394	runx2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	runt-related transcription factor 2a
chr5_-_40292299 Show fit	0.06	ENSDART00000097525	snx18a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting nexin 18a
chr1_-_20824411 Show fit	0.05	ENSDART00000182810	tll1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tolloid-like 1
chr1_-_18772241 Show fit	0.05	ENSDART00000147645 ENSDART00000133194 ENSDART00000147525 ENSDART00000191493	tbc1d1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
chr9_+_500052 Show fit	0.05	ENSDART00000166707	CU984600.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr14_+_34558480 Show fit	0.05	ENSDART00000075170	pttg1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pituitary tumor-transforming 1
chr18_-_49283058 Show fit	0.05	ENSDART00000076554	si:zfos-464b6.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:zfos-464b6.2
chr5_+_25084385 Show fit	0.05	ENSDART00000134526 ENSDART00000111863	paxx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAXX, non-homologous end joining factor
chr25_-_10791437 Show fit	0.05	ENSDART00000127054	BX572619.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_-_53282539 Show fit	0.05	ENSDART00000164953	FO704905.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_-_28565230 Show fit	0.05	ENSDART00000028887	tmem9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TMEM9 domain family, member B
chr4_+_73215536 Show fit	0.05	ENSDART00000174290	LO018260.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Danio rerio protein NLRC3-like (LOC101883187), mRNA.
chr8_-_13471916 Show fit	0.04	ENSDART00000146558	pimr105 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 105
chr14_+_46118834 Show fit	0.04	ENSDART00000124417 ENSDART00000017785	naa15a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	N(alpha)-acetyltransferase 15, NatA auxiliary subunit a
chr23_+_31245395 Show fit	0.04	ENSDART00000053588	irak1bp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin-1 receptor-associated kinase 1 binding protein 1
chr2_-_1468258 Show fit	0.04	ENSDART00000114431	gpaa1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycosylphosphatidylinositol anchor attachment 1
chr8_-_13428740 Show fit	0.04	ENSDART00000131826	CR354547.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_-_13419049 Show fit	0.04	ENSDART00000133656	pimr101 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 101
chr5_+_54400971 Show fit	0.04	ENSDART00000169695	bspry Links NCBI UniProt ZFIN ENSEMBL Google Show fit	B-box and SPRY domain containing
chr22_+_344763 Show fit	0.03	ENSDART00000181934	CU914780.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_+_56229674 Show fit	0.03	ENSDART00000127714	c3a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	complement component c3a, duplicate 2
chr2_-_16449504 Show fit	0.03	ENSDART00000144801	atr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATR serine/threonine kinase
chr4_+_1722899 Show fit	0.03	ENSDART00000021139	fgfr1op2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FGFR1 oncogene partner 2
chr8_-_13454281 Show fit	0.03	ENSDART00000141959	CR354547.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_22015751 Show fit	0.03	ENSDART00000147055	si:rp71-1f1.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:rp71-1f1.6
chr24_-_28259127 Show fit	0.03	ENSDART00000149589	prkag2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein kinase, AMP-activated, gamma 2 non-catalytic subunit a
chr8_-_13442871 Show fit	0.03	ENSDART00000144887	pimr106 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 106
chr5_-_25084318 Show fit	0.03	ENSDART00000089339	dph7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	diphthamide biosynthesis 7
chr24_+_42127983 Show fit	0.03	ENSDART00000190157 ENSDART00000176032 ENSDART00000175790	wwp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WW domain containing E3 ubiquitin protein ligase 1
chr16_+_53710416 Show fit	0.03	ENSDART00000155929	nod1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleotide-binding oligomerization domain containing 1
chr6_+_9677420 Show fit	0.03	ENSDART00000064995	sumo1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	small ubiquitin-like modifier 1
chr13_-_50546634 Show fit	0.02	ENSDART00000192127	CU570781.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_+_52847049 Show fit	0.02	ENSDART00000121980	creb3l3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cAMP responsive element binding protein 3-like 3b
chr8_-_13486258 Show fit	0.02	ENSDART00000137459	pimr104 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 104
chr24_+_42117231 Show fit	0.02	ENSDART00000067734	snx16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting nexin 16
chr3_-_12970418 Show fit	0.02	ENSDART00000158747	pdgfab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	platelet-derived growth factor alpha polypeptide b
chr2_+_21605547 Show fit	0.02	ENSDART00000112014	mplkip Links NCBI UniProt ZFIN ENSEMBL Google Show fit	M-phase specific PLK1 interacting protein
chr2_+_2904080 Show fit	0.02	ENSDART00000110416	eif2b5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 2B, subunit 5 epsilon
chr19_+_8606883 Show fit	0.02	ENSDART00000054469 ENSDART00000185264	s100a10a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	S100 calcium binding protein A10a
chr20_+_43925266 Show fit	0.02	ENSDART00000037379	clic5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chloride intracellular channel 5b
chr3_+_41917499 Show fit	0.01	ENSDART00000028673	lfng Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
chr2_+_43750899 Show fit	0.01	ENSDART00000135836	arhgap12a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 12a
chr19_-_307246 Show fit	0.01	ENSDART00000145916	lingo4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat and Ig domain containing 4a
chr19_+_7506380 Show fit	0.01	ENSDART00000182837	prcc Links NCBI UniProt ZFIN ENSEMBL Google Show fit	papillary renal cell carcinoma (translocation-associated)
chr21_+_25688388 Show fit	0.01	ENSDART00000125709	bicdl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bicaudal-D-related protein 2
chr4_+_1530287 Show fit	0.01	ENSDART00000067446	slc38a4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 38, member 4
chr2_-_5502256 Show fit	0.01	ENSDART00000193037	saga Links NCBI UniProt ZFIN ENSEMBL Google Show fit	S-antigen; retina and pineal gland (arrestin) a
chr18_-_6975175 Show fit	0.01	ENSDART00000134194	si:dkey-266m15.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-266m15.6
chr1_-_26544268 Show fit	0.00	ENSDART00000152117	si:ch211-202n12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-202n12.2
chr13_-_13754091 Show fit	0.00	ENSDART00000131255	ky Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kyphoscoliosis peptidase
chr24_+_42149296 Show fit	0.00	ENSDART00000154231	serpinb1l3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 3
chr15_+_47582207 Show fit	0.00	ENSDART00000159388	CABZ01087566.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr12_-_14922955 Show fit	0.00	ENSDART00000002078	neurod2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurogenic differentiation 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0061687	detoxification of inorganic compound(GO:0061687)
0.0	0.1	GO:0035124	embryonic caudal fin morphogenesis(GO:0035124)
0.0	0.1	GO:0060612	adipose tissue development(GO:0060612)
0.0	0.2	GO:0071425	hematopoietic stem cell proliferation(GO:0071425)
0.0	0.1	GO:0010887	negative regulation of cholesterol storage(GO:0010887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0004060	arylamine N-acetyltransferase activity(GO:0004060)
0.0	0.1	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0	0.3	GO:0005105	type 1 fibroblast growth factor receptor binding(GO:0005105)
0.0	0.1	GO:0047134	protein-disulfide reductase activity(GO:0047134)
0.0	0.1	GO:0004523	RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0	0.1	GO:0004340	glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)