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PRJEB1986: zebrafish developmental stages transcriptome

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Results for meis3

Z-value: 0.36

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Transcription factors associated with meis3

Gene Symbol Gene ID Gene Info
meis3
ENSDARG00000002795 myeloid ecotropic viral integration site 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
meis3dr11_v1_chr15_-_6863150_6863150-0.351.4e-01Click!

Activity profile of meis3 motif

Sorted Z-values of meis3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr16_-_16152199 0.99 ENSDART00000012718
fabp11b
fatty acid binding protein 11b
chr9_-_22310919 0.92 ENSDART00000108719
crygm2d10
crystallin, gamma M2d10
chr9_-_22205682 0.86 ENSDART00000101869
crygm2d12
crystallin, gamma M2d12
chr13_-_7031033 0.86 ENSDART00000193211
CABZ01061524.1

chr9_-_22232902 0.84 ENSDART00000101845
crygm2d5
crystallin, gamma M2d5
chr9_-_22240052 0.81 ENSDART00000111109
crygm2d9
crystallin, gamma M2d9
chr6_+_3827751 0.68 ENSDART00000003008
ENSDART00000122348
gad1b
glutamate decarboxylase 1b
chr16_-_26537103 0.59 ENSDART00000134908
ENSDART00000008152
sgk2b
serum/glucocorticoid regulated kinase 2b
chr10_-_39011514 0.53 ENSDART00000075123
pcp4a
Purkinje cell protein 4a
chr6_-_14146979 0.44 ENSDART00000089564
cacnb4b
calcium channel, voltage-dependent, beta 4b subunit
chr15_-_29598679 0.42 ENSDART00000155153
si:ch211-207n23.2
si:ch211-207n23.2
chr20_-_26001288 0.40 ENSDART00000136518
ENSDART00000063177
capn3b
calpain 3b
chr2_+_6127593 0.40 ENSDART00000184007
fzr1b
fizzy/cell division cycle 20 related 1b
chr21_+_25231160 0.39 ENSDART00000063089
ENSDART00000139127
gng8
guanine nucleotide binding protein (G protein), gamma 8
chr8_-_27515540 0.37 ENSDART00000146132
si:ch211-254n4.3
si:ch211-254n4.3
chr1_-_26026956 0.37 ENSDART00000102346
si:ch211-145b13.6
si:ch211-145b13.6
chr5_+_23118470 0.36 ENSDART00000149893
nexmifa
neurite extension and migration factor a
chr15_-_4415917 0.35 ENSDART00000062874
atp1b3b
ATPase Na+/K+ transporting subunit beta 3b
chr5_-_46980651 0.35 ENSDART00000181022
ENSDART00000168038
edil3a
EGF-like repeats and discoidin I-like domains 3a
chr3_+_32557615 0.34 ENSDART00000151608
pax10
paired box 10
chr9_+_7358749 0.30 ENSDART00000081660
ihha
Indian hedgehog homolog a
chr22_+_17214389 0.29 ENSDART00000187083
ENSDART00000159468
ENSDART00000129109
ENSDART00000090107
nrd1b
nardilysin b (N-arginine dibasic convertase)
chr20_+_32406011 0.28 ENSDART00000018640
ENSDART00000137910
snx3
sorting nexin 3
chr2_+_27651984 0.27 ENSDART00000126762
tmem68
transmembrane protein 68
chr16_-_7239457 0.25 ENSDART00000148992
ENSDART00000149260
nt5c3a
5'-nucleotidase, cytosolic IIIA
chr15_-_29598444 0.25 ENSDART00000154847
si:ch211-207n23.2
si:ch211-207n23.2
chr17_-_43552894 0.24 ENSDART00000181226
ENSDART00000188125
nt5c1ab
5'-nucleotidase, cytosolic IAb
chr1_+_34496855 0.24 ENSDART00000012873
klf12a
Kruppel-like factor 12a
chr21_+_30194904 0.23 ENSDART00000137023
ENSDART00000078403
BRD8
si:ch211-59d17.3
chr8_+_26329482 0.21 ENSDART00000048676
prkar2aa
protein kinase, cAMP-dependent, regulatory, type II, alpha A
chr7_-_67214972 0.19 ENSDART00000156861
swap70a
switching B cell complex subunit SWAP70a
chr5_+_24245682 0.19 ENSDART00000049003
atp6v1aa
ATPase H+ transporting V1 subunit Aa
chr18_+_36770166 0.19 ENSDART00000078151
fosb
FBJ murine osteosarcoma viral oncogene homolog B
chr9_-_28399071 0.18 ENSDART00000104317
ENSDART00000064343
klf7b
Kruppel-like factor 7b
chr25_+_19670273 0.18 ENSDART00000073472
zgc:113426
zgc:113426
chr13_+_30169681 0.18 ENSDART00000138326
pald1b
phosphatase domain containing, paladin 1b
chr17_-_5583345 0.17 ENSDART00000035944
clic5a
chloride intracellular channel 5a
chr11_-_18799827 0.17 ENSDART00000185438
ENSDART00000189116
ENSDART00000180504
pfkfb2b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b
chr11_-_17981421 0.16 ENSDART00000005999
ENSDART00000104046
twf2b
twinfilin actin-binding protein 2b
chr14_-_17305657 0.15 ENSDART00000168853
jakmip1
janus kinase and microtubule interacting protein 1
chr8_-_7444390 0.15 ENSDART00000149671
hdac6
histone deacetylase 6
chr18_+_36769758 0.15 ENSDART00000180375
ENSDART00000136463
ENSDART00000133487
ENSDART00000130206
fosb
FBJ murine osteosarcoma viral oncogene homolog B
chr19_-_35596207 0.15 ENSDART00000136811
col8a2
collagen, type VIII, alpha 2
chr21_+_45733871 0.14 ENSDART00000187285
ENSDART00000193018
zgc:77058
zgc:77058
chr8_+_8291492 0.14 ENSDART00000151314
srpk3
SRSF protein kinase 3
chr2_+_9918678 0.14 ENSDART00000081253
acbd5b
acyl-CoA binding domain containing 5b
chr23_+_23182037 0.13 ENSDART00000137353
klhl17
kelch-like family member 17
chr23_+_21663631 0.13 ENSDART00000066125
dhrs3a
dehydrogenase/reductase (SDR family) member 3a
chr5_+_36752943 0.13 ENSDART00000017138
exoc3l2a
exocyst complex component 3-like 2a
chr2_+_9918935 0.13 ENSDART00000140434
acbd5b
acyl-CoA binding domain containing 5b
chr12_-_45876387 0.13 ENSDART00000043210
ENSDART00000149044
pax2b
paired box 2b
chr12_-_45875946 0.12 ENSDART00000149970
pax2b
paired box 2b
chr6_-_13408680 0.12 ENSDART00000151566
fmnl2b
formin-like 2b
chr10_+_26667475 0.12 ENSDART00000133281
ENSDART00000147013
si:ch73-52f15.5
si:ch73-52f15.5
chr22_-_34872533 0.11 ENSDART00000167176
slit1b
slit homolog 1b (Drosophila)
chr16_+_24971717 0.11 ENSDART00000156958
fpr1
formyl peptide receptor 1
chr6_+_9952678 0.11 ENSDART00000019325
cyp20a1
cytochrome P450, family 20, subfamily A, polypeptide 1
chr3_-_21118969 0.11 ENSDART00000129016
maza
MYC-associated zinc finger protein a (purine-binding transcription factor)
chr6_+_33537267 0.10 ENSDART00000040334
pik3r3b
phosphoinositide-3-kinase, regulatory subunit 3b (gamma)
chr14_-_51014292 0.10 ENSDART00000029797
faf2
Fas associated factor family member 2
chr8_-_19280856 0.10 ENSDART00000100473
zgc:77486
zgc:77486
chr7_-_26306546 0.10 ENSDART00000140817
zgc:77439
zgc:77439
chr5_+_37091626 0.10 ENSDART00000161054
tagln2
transgelin 2
chr20_-_22798794 0.10 ENSDART00000148084
fip1l1a
FIP1 like 1a (S. cerevisiae)
chr6_+_48041759 0.09 ENSDART00000140086
si:dkey-92f12.2
si:dkey-92f12.2
chr7_+_24573721 0.09 ENSDART00000173938
ENSDART00000173681
si:dkeyp-75h12.7
si:dkeyp-75h12.7
chr19_+_20713424 0.08 ENSDART00000129730
rab5aa
RAB5A, member RAS oncogene family, a
chr7_+_6879534 0.08 ENSDART00000157731
zgc:175248
zgc:175248
chr12_+_47122104 0.07 ENSDART00000184248
CABZ01088982.1

chr25_-_10610961 0.07 ENSDART00000153474
ppp6r3
protein phosphatase 6, regulatory subunit 3
chr1_-_40911332 0.07 ENSDART00000027463
hmx4
H6 family homeobox 4
chr6_+_9107063 0.07 ENSDART00000083820
vps16
vacuolar protein sorting protein 16
chr17_+_33495194 0.07 ENSDART00000033691
pth2
parathyroid hormone 2
chr23_-_15216654 0.07 ENSDART00000131649
sulf2b
sulfatase 2b
chr24_+_12989727 0.07 ENSDART00000126842
ENSDART00000129309
flj11011l
hypothetical protein FLJ11011-like (H. sapiens)
chr2_-_44183451 0.07 ENSDART00000111246
cadm3
cell adhesion molecule 3
chr17_-_15667198 0.06 ENSDART00000142972
ENSDART00000132571
ENSDART00000189936
manea
mannosidase, endo-alpha
chr10_+_4964463 0.06 ENSDART00000109882
lyrm7
LYR motif containing 7
chr18_-_7810214 0.06 ENSDART00000139505
ENSDART00000139188
shank3a
SH3 and multiple ankyrin repeat domains 3a
chr1_-_10347198 0.06 ENSDART00000109141
ENSDART00000152565
si:ch211-243g6.3
si:ch211-243g6.3
chr23_-_764135 0.06 ENSDART00000010248
ENSDART00000183978
mitfb
microphthalmia-associated transcription factor b
chr7_-_19369002 0.06 ENSDART00000165680
ntn4
netrin 4
chr9_-_25181137 0.06 ENSDART00000192624
esd
esterase D/formylglutathione hydrolase
chr2_-_44183613 0.05 ENSDART00000079596
cadm3
cell adhesion molecule 3
chr2_-_32558795 0.05 ENSDART00000140026
smarcd3a
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a
chr8_-_8698607 0.04 ENSDART00000046712
zgc:86609
zgc:86609
chr11_+_12879635 0.04 ENSDART00000182515
ENSDART00000081296
si:dkey-11m19.5
si:dkey-11m19.5
chr22_+_30335936 0.04 ENSDART00000059923
mxi1
max interactor 1, dimerization protein
chr8_-_18225968 0.04 ENSDART00000135504
si:ch211-241d21.5
si:ch211-241d21.5
chr10_+_26961965 0.03 ENSDART00000089144
vps51
vacuolar protein sorting 51 homolog (S. cerevisiae)
chr25_-_28600433 0.03 ENSDART00000138980
agbl2
ATP/GTP binding protein-like 2
chr7_+_34794829 0.03 ENSDART00000009698
ENSDART00000075089
ENSDART00000173456
esrp2
epithelial splicing regulatory protein 2
chr13_-_33227411 0.03 ENSDART00000057386
golga5
golgin A5
chr15_+_29024895 0.03 ENSDART00000141164
ENSDART00000144126
si:ch211-137a8.2
si:ch211-137a8.2
chr3_+_26734162 0.02 ENSDART00000114552
si:dkey-202l16.5
si:dkey-202l16.5
chr8_-_7444155 0.02 ENSDART00000148993
hdac6
histone deacetylase 6
chr2_-_27651674 0.01 ENSDART00000177402
tgs1
trimethylguanosine synthase 1
chr21_+_2506013 0.01 ENSDART00000162351
hmgcrb
3-hydroxy-3-methylglutaryl-CoA reductase b
chr5_-_32396929 0.01 ENSDART00000023977
fbxw2
F-box and WD repeat domain containing 2
chr10_-_32877348 0.01 ENSDART00000018977
ENSDART00000133421
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1
chr10_-_33379850 0.01 ENSDART00000186924
ska2
spindle and kinetochore associated complex subunit 2
chr7_+_65673885 0.00 ENSDART00000169182
parvab
parvin, alpha b
chr23_-_7125494 0.00 ENSDART00000111929
slco4a1
solute carrier organic anion transporter family, member 4A1
chr17_-_30839338 0.00 ENSDART00000139707
gdf7
growth differentiation factor 7
chr20_+_51104367 0.00 ENSDART00000073981
eif2s1b
eukaryotic translation initiation factor 2, subunit 1 alpha b

Network of associatons between targets according to the STRING database.

First level regulatory network of meis3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.1 0.4 GO:0097264 self proteolysis(GO:0097264)
0.1 0.4 GO:2000048 negative regulation of cell-substrate adhesion(GO:0010812) negative regulation of cell-cell adhesion mediated by cadherin(GO:2000048)
0.1 0.4 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.3 GO:0048795 swim bladder morphogenesis(GO:0048795)
0.0 0.4 GO:0018120 peptidyl-arginine ADP-ribosylation(GO:0018120)
0.0 0.2 GO:0010591 regulation of lamellipodium assembly(GO:0010591)
0.0 0.1 GO:0048169 regulation of long-term neuronal synaptic plasticity(GO:0048169)
0.0 3.3 GO:0002088 lens development in camera-type eye(GO:0002088)
0.0 0.2 GO:0021634 optic nerve formation(GO:0021634)
0.0 0.4 GO:0006883 cellular sodium ion homeostasis(GO:0006883)
0.0 0.2 GO:0046085 adenosine metabolic process(GO:0046085)
0.0 0.1 GO:0002283 neutrophil activation involved in immune response(GO:0002283)
0.0 0.3 GO:0042541 hemoglobin biosynthetic process(GO:0042541)
0.0 0.4 GO:1901385 regulation of voltage-gated calcium channel activity(GO:1901385)
0.0 0.1 GO:0098787 mRNA cleavage involved in mRNA processing(GO:0098787) pre-mRNA cleavage required for polyadenylation(GO:0098789)
0.0 0.2 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)
0.0 0.2 GO:0043949 regulation of cAMP-mediated signaling(GO:0043949)
0.0 0.1 GO:0042572 retinol metabolic process(GO:0042572)
0.0 0.1 GO:0010890 positive regulation of sequestering of triglyceride(GO:0010890)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0005890 sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533)
0.0 0.3 GO:0030904 retromer complex(GO:0030904)
0.0 0.4 GO:0031680 G-protein beta/gamma-subunit complex(GO:0031680)
0.0 0.2 GO:0005952 cAMP-dependent protein kinase complex(GO:0005952)
0.0 0.1 GO:0098842 postsynaptic early endosome(GO:0098842)
0.0 0.1 GO:0033263 CORVET complex(GO:0033263)
0.0 0.4 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 0.2 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.0 0.0 GO:1990745 EARP complex(GO:1990745)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 0.4 GO:1990757 anaphase-promoting complex binding(GO:0010997) ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0042903 tubulin deacetylase activity(GO:0042903) acetylspermidine deacetylase activity(GO:0047611)
0.0 3.4 GO:0005212 structural constituent of eye lens(GO:0005212)
0.0 0.4 GO:0003956 NAD(P)+-protein-arginine ADP-ribosyltransferase activity(GO:0003956)
0.0 0.3 GO:0005113 patched binding(GO:0005113)
0.0 0.2 GO:0008603 cAMP-dependent protein kinase regulator activity(GO:0008603)
0.0 0.5 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.0 0.4 GO:0031681 G-protein beta-subunit binding(GO:0031681)
0.0 0.3 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.2 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.1 GO:0004745 retinol dehydrogenase activity(GO:0004745)
0.0 0.4 GO:0008331 high voltage-gated calcium channel activity(GO:0008331)
0.0 0.4 GO:0004198 calcium-dependent cysteine-type endopeptidase activity(GO:0004198)
0.0 0.2 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)
0.0 0.1 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline