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PRJEB1986: zebrafish developmental stages transcriptome

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Results for lhx6-1

Z-value: 0.24

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Transcription factors associated with lhx6-1

Gene Symbol Gene ID Gene Info
ENSDARG00000052165 si_ch211-236k19.2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
si:ch211-236k19.2dr11_v1_chr5_-_64900552_649005520.321.9e-01Click!

Activity profile of lhx6-1 motif

Sorted Z-values of lhx6-1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr12_+_20352400 0.30 ENSDART00000066383
hemoglobin, alpha embryonic 5
chr4_+_74929427 0.23 ENSDART00000174082
nucleoporin 50
chr20_+_46040666 0.21 ENSDART00000060744
si:dkey-7c18.24
chr6_+_102506 0.17 ENSDART00000172678
low density lipoprotein receptor b
chr1_-_20928772 0.17 ENSDART00000078277
methylsterol monooxygenase 1
chr7_+_30392613 0.15 ENSDART00000075508
lipase, hepatic a
chr16_-_28658341 0.14 ENSDART00000148456
ATP-binding cassette, sub-family B (MDR/TAP), member 4
chr12_-_32421046 0.13 ENSDART00000075567
ectonucleotide pyrophosphatase/phosphodiesterase 7, tandem duplicate 1
chr16_+_23975930 0.12 ENSDART00000147858
ENSDART00000144347
ENSDART00000115270
apolipoprotein C-IV
chr25_+_3326885 0.12 ENSDART00000104866
lactate dehydrogenase Bb
chr9_-_6372535 0.12 ENSDART00000149189
esophageal cancer related gene 4a
chr17_-_42988356 0.11 ENSDART00000024558
zgc:92137
chr25_+_3327071 0.11 ENSDART00000136131
ENSDART00000133243
lactate dehydrogenase Bb
chr14_-_14659023 0.11 ENSDART00000170355
ENSDART00000159888
ENSDART00000172241
NAD(P) dependent steroid dehydrogenase-like
chr4_+_62431132 0.11 ENSDART00000160226
si:ch211-79g12.1
chr25_+_4760489 0.10 ENSDART00000167399

chr13_+_24584401 0.10 ENSDART00000057599
fucose mutarotase
chr8_+_21353878 0.09 ENSDART00000056420
aminolevulinate, delta-, synthase 2
chr5_-_23277385 0.09 ENSDART00000134982
proteolipid protein 1b
chr22_-_30770751 0.09 ENSDART00000172115

chr6_-_39344259 0.09 ENSDART00000104074
zgc:158846
chr19_-_617246 0.09 ENSDART00000062551
cytochrome P450, family 51
chr6_+_3334710 0.09 ENSDART00000132848
ST3 beta-galactoside alpha-2,3-sialyltransferase 3a
chr19_-_12648122 0.08 ENSDART00000151184
family with sequence similarity 210, member Aa
chr13_+_228045 0.08 ENSDART00000161091
zgc:64201
chr3_-_31079186 0.07 ENSDART00000145636
ENSDART00000140569
elongin B
elongin B
chr21_-_39566854 0.07 ENSDART00000020174
dynein, light chain, LC8-type 2b
chr22_-_5518117 0.07 ENSDART00000164613

chr19_-_12648408 0.07 ENSDART00000103692
family with sequence similarity 210, member Aa
chr12_+_20567382 0.07 ENSDART00000123737

chr3_-_23407720 0.07 ENSDART00000155658
Rap guanine nucleotide exchange factor (GEF)-like 1
chr16_+_47207691 0.07 ENSDART00000062507
islet cell autoantigen 1
chr16_+_23976227 0.07 ENSDART00000193013
apolipoprotein C-IV
chr2_+_10007113 0.06 ENSDART00000155213
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3b
chr19_-_27858033 0.06 ENSDART00000103898
ENSDART00000144884
steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
chr13_+_9468535 0.06 ENSDART00000135088
ENSDART00000164270
ENSDART00000099619
ENSDART00000164656
si:dkey-265c15.6
chr13_+_8954667 0.06 ENSDART00000100241
3-hydroxyanthranilate 3,4-dioxygenase
chr1_+_29068654 0.06 ENSDART00000053932
cystathionine-beta-synthase a
chr2_+_30369116 0.06 ENSDART00000142137
peptidase inhibitor 15b
chr15_+_45563656 0.06 ENSDART00000157501
claudin 15-like b
chr8_-_45277370 0.06 ENSDART00000146364
ADAM metallopeptidase with thrombospondin type 1 motif, 13
chr11_+_5588122 0.06 ENSDART00000113281
zgc:172302
chr13_-_9045879 0.06 ENSDART00000155463
ENSDART00000140041
ENSDART00000137454
si:dkey-112g5.11
chr16_+_21330634 0.06 ENSDART00000191285
ENSDART00000183267
oxysterol binding protein-like 3b
chr2_-_2957970 0.06 ENSDART00000162505
si:ch1073-82l19.1
chr6_-_39764995 0.06 ENSDART00000085277
phosphofructokinase, muscle b
chr4_-_71912457 0.05 ENSDART00000179685
si:dkey-92c21.1
chr5_+_13394543 0.05 ENSDART00000051669
ENSDART00000135921
tectonic family member 2
chr7_-_33868903 0.05 ENSDART00000173500
ENSDART00000178746
uveal autoantigen with coiled-coil domains and ankyrin repeats b
chr24_+_14581864 0.05 ENSDART00000134536
thiamine triphosphatase
chr12_-_22238004 0.05 ENSDART00000038310
ORMDL sphingolipid biosynthesis regulator 3
chr20_+_18661624 0.05 ENSDART00000152136
ENSDART00000126959
tumor necrosis factor, alpha-induced protein 2a
chr6_-_19042294 0.05 ENSDART00000159461
si:rp71-81e14.2
chr23_-_37536127 0.05 ENSDART00000078253
torsin family 1 like 1
chr17_+_8212477 0.05 ENSDART00000064665
solute carrier family 18, subfamily B, member 1
chr7_+_54642005 0.05 ENSDART00000171864
fibroblast growth factor 19
chr25_+_34641536 0.05 ENSDART00000167033

chr22_+_19407531 0.05 ENSDART00000141060
si:dkey-78l4.2
chr22_-_15578402 0.05 ENSDART00000062986
hematopoietic SH2 domain containing
chr2_+_30721466 0.05 ENSDART00000128982
si:dkey-94e7.2
chr18_-_48547564 0.05 ENSDART00000138607
potassium inwardly-rectifying channel, subfamily J, member 1a, tandem duplicate 1
chr24_-_31425799 0.05 ENSDART00000157998
cyclic nucleotide gated channel beta 3, tandem duplicate 1
chr6_-_46861676 0.04 ENSDART00000188712
ENSDART00000190148
immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3
chr11_-_44876005 0.04 ENSDART00000192006
opsin 6, group member a
chr16_-_51288178 0.04 ENSDART00000079864
zgc:173729
chr10_-_15963903 0.04 ENSDART00000142357
si:dkey-3h23.3
chr1_+_7517454 0.04 ENSDART00000016139
LanC antibiotic synthetase component C-like 1 (bacterial)
chr4_-_32466449 0.04 ENSDART00000192050
si:dkey-16p6.1
chr12_+_1469327 0.04 ENSDART00000059143
ubiquitin specific peptidase 22
chr18_+_7073130 0.04 ENSDART00000101216
ENSDART00000148947
si:dkey-88e18.2
chr5_+_19479200 0.04 ENSDART00000137703
aldehyde dehydrogenase 3 family, member B2
chr8_-_23780334 0.04 ENSDART00000145179
ENSDART00000145894
zgc:195245
chr20_-_53366137 0.04 ENSDART00000146001
WAS protein family, member 1
chr13_-_9213207 0.04 ENSDART00000139861
ENSDART00000140524
si:dkey-33c12.11
chr5_-_23843636 0.04 ENSDART00000193280
si:ch211-135f11.5
chr2_+_56937548 0.04 ENSDART00000189308

chr19_+_1673599 0.04 ENSDART00000163127
kelch-like family member 7
chr1_+_19708508 0.04 ENSDART00000054581
ENSDART00000131206
membrane-associated ring finger (C3HC4) 1
chr13_+_9496748 0.04 ENSDART00000147050
ENSDART00000102120

chr24_-_26386627 0.04 ENSDART00000125344
SKI-like proto-oncogene b
chr4_+_2637947 0.04 ENSDART00000130623
dihydrouridine synthase 4-like (S. cerevisiae)
chr4_-_2440175 0.04 ENSDART00000058059
oxysterol binding protein like 8
chr22_+_19366866 0.04 ENSDART00000137301
si:dkey-21e2.12
chr3_-_32934359 0.04 ENSDART00000124160
amine oxidase, copper containing 2
chr16_+_39159752 0.04 ENSDART00000122081
syntabulin (syntaxin-interacting)
chr24_-_32582378 0.04 ENSDART00000066590
retinol dehydrogenase 12, like
chr21_+_28958471 0.04 ENSDART00000144331
ENSDART00000005929
protein phosphatase 3, catalytic subunit, alpha isozyme
chr14_+_7902374 0.04 ENSDART00000113299
zgc:110843
chr6_+_120181 0.04 ENSDART00000151209
ENSDART00000185930
cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
chr5_-_7199998 0.04 ENSDART00000167316

chr4_-_28158335 0.04 ENSDART00000134605
GRAM domain containing 4a
chr19_+_9295244 0.04 ENSDART00000132255
ENSDART00000144299
si:ch73-15n24.1
chr8_-_45867358 0.03 ENSDART00000132810
ADAM metallopeptidase domain 9
chr5_+_7564644 0.03 ENSDART00000192173

chr2_-_5561005 0.03 ENSDART00000057439
ENSDART00000137882
presenilin associated, rhomboid-like a
chr25_-_10791437 0.03 ENSDART00000127054

chr5_-_66301142 0.03 ENSDART00000067541
prolactin receptor b
chr21_-_5205617 0.03 ENSDART00000145554
ENSDART00000045284
ribosomal protein L37
chr13_+_49175947 0.03 ENSDART00000056927
egl-9 family hypoxia-inducible factor 1a
chr4_-_837768 0.03 ENSDART00000185280
ENSDART00000135618
sine oculis binding protein homolog (Drosophila) b
chr1_+_55755304 0.03 ENSDART00000144983
trans-2,3-enoyl-CoA reductase b
chr4_+_9467049 0.03 ENSDART00000012659
zgc:55888
chr16_-_32013913 0.03 ENSDART00000030282
ENSDART00000138701
glutathione S-transferase kappa 1
chr16_+_42471455 0.03 ENSDART00000166640
si:ch211-215k15.5
chr17_+_30704068 0.03 ENSDART00000062793
apolipoprotein Ba
chr7_+_20344032 0.03 ENSDART00000144948
ENSDART00000138786
plac8 onzin related protein 1
chr15_+_37954666 0.03 ENSDART00000126534
ENSDART00000155548
si:dkey-238d18.7
chr15_-_20956384 0.03 ENSDART00000135770
tubulin folding cofactor E-like a
chr19_+_2631565 0.03 ENSDART00000171487
family with sequence similarity 126, member A
chr18_+_1145571 0.03 ENSDART00000135055
REC114 meiotic recombination protein
chr8_+_25767610 0.03 ENSDART00000062406
calcium channel, voltage-dependent, L type, alpha 1S subunit, b
chr18_-_14274803 0.03 ENSDART00000166643
malonyl-CoA decarboxylase
chr19_+_42983613 0.03 ENSDART00000033724
fatty acid binding protein 3, muscle and heart
chr2_-_15031858 0.03 ENSDART00000191478
holocytochrome c synthase a
chr9_-_23994225 0.03 ENSDART00000140346
collagen, type VI, alpha 3
chr13_+_29470442 0.03 ENSDART00000028417
leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
chr7_+_20344222 0.03 ENSDART00000141186
ENSDART00000139274
plac8 onzin related protein 1
chr4_+_77957611 0.03 ENSDART00000156692
ADP-ribosylation factor GTPase activating protein 3
chr13_+_49175624 0.03 ENSDART00000193550
egl-9 family hypoxia-inducible factor 1a
chr5_-_40292299 0.03 ENSDART00000097525
sorting nexin 18a
chr6_+_13779857 0.03 ENSDART00000154793
transmembrane protein 198b
chr10_+_44584614 0.03 ENSDART00000163523
seizure related 6 homolog (mouse)-like
chr1_-_1402303 0.03 ENSDART00000130697
runt-related transcription factor 1
chr2_-_55298075 0.03 ENSDART00000186404
ENSDART00000149062
RAB8A, member RAS oncogene family
chr2_+_30721070 0.03 ENSDART00000099052
si:dkey-94e7.2
chr2_+_30368800 0.03 ENSDART00000179564
peptidase inhibitor 15b
chr20_-_47188966 0.03 ENSDART00000152965
si:dkeyp-104f11.9
chr7_+_50822465 0.02 ENSDART00000011082
period circadian clock 1b
chr4_+_29967255 0.02 ENSDART00000150383
zinc finger protein 1128
chr10_-_3138403 0.02 ENSDART00000183365
ubiquitin-conjugating enzyme E2L 3a
chr15_+_33691455 0.02 ENSDART00000170329
histone deacetylase 12
chr2_-_27329667 0.02 ENSDART00000187490
thioredoxin related transmembrane protein 3a
chr17_-_6198823 0.02 ENSDART00000028407
ENSDART00000193636
protein tyrosine kinase 2 beta, a
chr22_-_21897203 0.02 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr12_-_18883079 0.02 ENSDART00000178619
shisa family member 8b
chr18_-_25568994 0.02 ENSDART00000133029
si:ch211-13k12.2
chr12_-_36521767 0.02 ENSDART00000110290
unc-13 homolog D (C. elegans)
chr10_+_34175476 0.02 ENSDART00000102123
zgc:174193
chr4_-_71152937 0.02 ENSDART00000191017
si:dkey-193i10.4
chr13_+_9521629 0.02 ENSDART00000149870
ENSDART00000137666
si:dkey-19p15.4
chr20_+_27691307 0.02 ENSDART00000153299
si:dkey-1h6.8
chr12_-_33357655 0.02 ENSDART00000066233
ENSDART00000148165
solute carrier family 16 (monocarboxylate transporter), member 3
chr17_-_37195163 0.02 ENSDART00000108514
additional sex combs like transcriptional regulator 2
chr3_-_10751491 0.02 ENSDART00000016351
zgc:112965
chr19_-_31341850 0.02 ENSDART00000040810
ADP-ribosylation factor-like 4ab
chr24_+_38534550 0.02 ENSDART00000105677
zgc:154125
chr20_+_19006703 0.02 ENSDART00000128435
PIN2/TERF1 interacting, telomerase inhibitor 1
chr2_-_21621878 0.02 ENSDART00000189540
zgc:55781
chr4_-_65525733 0.02 ENSDART00000159401

chr7_+_69459759 0.02 ENSDART00000160500
CTD nuclear envelope phosphatase 1b
chr4_+_62576422 0.02 ENSDART00000180679
si:ch211-79g12.2
chr16_-_11798994 0.02 ENSDART00000135408
cornifelin
chr3_-_13147310 0.02 ENSDART00000160840
protein kinase, cAMP-dependent, regulatory, type I, beta
chr10_-_3138859 0.02 ENSDART00000190606
ubiquitin-conjugating enzyme E2L 3a
chr24_-_24724233 0.02 ENSDART00000127044
ENSDART00000012399
armadillo repeat containing 1
chr2_+_21312972 0.02 ENSDART00000080495
zinc finger and BTB domain containing 47a
chr1_-_44161417 0.02 ENSDART00000083213
solute carrier family 43, member 3a
chr8_-_979735 0.02 ENSDART00000149612
zinc finger protein 366
chr17_+_38030327 0.02 ENSDART00000085481
solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
chr19_-_6134802 0.02 ENSDART00000140051
capicua transcriptional repressor a
chr15_-_2497568 0.02 ENSDART00000080398
sialidase 4
chr22_-_27709692 0.02 ENSDART00000172458

chr9_-_12886108 0.02 ENSDART00000177283
ankyrin repeat and zinc finger domain containing 1
chr22_-_17729778 0.02 ENSDART00000192132
si:ch73-63e15.2
chr11_+_4026229 0.02 ENSDART00000041417
calcium/calmodulin-dependent protein kinase Ib
chr6_-_54815886 0.02 ENSDART00000180793
ENSDART00000007498
troponin I type 1b (skeletal, slow)
chr22_+_6711549 0.02 ENSDART00000132094

chr19_-_1871415 0.02 ENSDART00000004585
CLPTM1-like
chr22_+_6587280 0.02 ENSDART00000106185

chr7_-_17690983 0.02 ENSDART00000009367
mitogen-activated protein kinase kinase kinase kinase 2
chr23_-_41651759 0.02 ENSDART00000146808
si:ch73-184c24.1
chr21_+_4328348 0.02 ENSDART00000131658
ENSDART00000143799
si:dkey-84o3.7
chr20_-_52642504 0.02 ENSDART00000138982
ENSDART00000134999
si:ch211-221n20.2
chr4_+_11384891 0.02 ENSDART00000092381
ENSDART00000186577
ENSDART00000191054
ENSDART00000191584
piccolo presynaptic cytomatrix protein a
chr17_-_37195354 0.02 ENSDART00000190963
additional sex combs like transcriptional regulator 2
chr4_-_29753895 0.02 ENSDART00000150742
si:dkey-191j3.1
chr13_+_771403 0.02 ENSDART00000093166
neurexin 1b
chr2_-_30721502 0.02 ENSDART00000132389
si:dkey-94e7.1
chr15_-_18200358 0.02 ENSDART00000158569
si:ch211-247l8.8
chr22_+_6727266 0.02 ENSDART00000142352

chr25_+_21324588 0.02 ENSDART00000151842
leucine rich repeat neuronal 3a
chr2_-_3038904 0.02 ENSDART00000186795
guanylate kinase 1a
chr4_+_41789497 0.02 ENSDART00000126634
si:dkey-237m9.2
chr6_+_9870192 0.02 ENSDART00000150894
si:ch211-222n4.6
chr21_+_6751760 0.02 ENSDART00000135914
olfactomedin 1b
chr2_+_24936766 0.02 ENSDART00000025962
glycogenin 1a
chr16_-_51888952 0.02 ENSDART00000186407
ENSDART00000175435
ribosomal protein L28
chr19_-_46088429 0.02 ENSDART00000161385
phosphatidylserine synthase 1b
chr12_-_36521947 0.02 ENSDART00000152946
unc-13 homolog D (C. elegans)
chr6_+_34511886 0.02 ENSDART00000179450
low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr4_+_11375894 0.02 ENSDART00000190471
ENSDART00000143963
piccolo presynaptic cytomatrix protein a
chr11_+_29790626 0.02 ENSDART00000067822
dynein, light chain, Tctex-type 3
chr19_-_22541284 0.02 ENSDART00000019505
plectin a
chr1_-_29139141 0.02 ENSDART00000075546
ENSDART00000133246
heat shock transcription factor 2 binding protein
chr25_+_13498188 0.02 ENSDART00000015710
SNF related kinase b
chr19_-_4793263 0.02 ENSDART00000147510
ENSDART00000141336
ENSDART00000110551
ENSDART00000146684
ST3 beta-galactoside alpha-2,3-sialyltransferase 1
chr11_+_7264457 0.01 ENSDART00000154182
receptor accessory protein 6
chr22_-_10121880 0.01 ENSDART00000002348
retinol dehydrogenase 5 (11-cis/9-cis)
chr3_-_23406964 0.01 ENSDART00000114723
Rap guanine nucleotide exchange factor (GEF)-like 1
chr5_-_9625459 0.01 ENSDART00000143347
SH2B adaptor protein 3

Network of associatons between targets according to the STRING database.

First level regulatory network of lhx6-1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0070314 G1 to G0 transition(GO:0070314)
0.0 0.1 GO:1901223 negative regulation of NIK/NF-kappaB signaling(GO:1901223)
0.0 0.1 GO:0006004 fucose metabolic process(GO:0006004)
0.0 0.3 GO:0015671 oxygen transport(GO:0015671)
0.0 0.1 GO:0006685 sphingomyelin catabolic process(GO:0006685)
0.0 0.1 GO:1905038 regulation of sphingolipid biosynthetic process(GO:0090153) negative regulation of sphingolipid biosynthetic process(GO:0090155) negative regulation of ceramide biosynthetic process(GO:1900060) regulation of membrane lipid metabolic process(GO:1905038) regulation of ceramide biosynthetic process(GO:2000303)
0.0 0.1 GO:2000582 positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.1 GO:0043420 anthranilate metabolic process(GO:0043420)
0.0 0.1 GO:0006535 cysteine biosynthetic process from serine(GO:0006535) hydrogen sulfide biosynthetic process(GO:0070814)
0.0 0.1 GO:0071763 nuclear membrane organization(GO:0071763)
0.0 0.0 GO:0002495 antigen processing and presentation of peptide antigen via MHC class II(GO:0002495)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.0 0.1 GO:0035339 SPOTS complex(GO:0035339)
0.0 0.1 GO:0030891 VCB complex(GO:0030891)
0.0 0.2 GO:0034364 high-density lipoprotein particle(GO:0034364)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0034185 apolipoprotein binding(GO:0034185)
0.0 0.1 GO:0015562 protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562)
0.0 0.1 GO:0042806 fucose binding(GO:0042806)
0.0 0.2 GO:0004459 L-lactate dehydrogenase activity(GO:0004459)
0.0 0.1 GO:0016748 succinyltransferase activity(GO:0016748)
0.0 0.3 GO:0031720 haptoglobin binding(GO:0031720)
0.0 0.2 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.1 GO:0035671 3-oxo-5-alpha-steroid 4-dehydrogenase activity(GO:0003865) steroid dehydrogenase activity, acting on the CH-CH group of donors(GO:0033765) enone reductase activity(GO:0035671) cholestenone 5-alpha-reductase activity(GO:0047751)
0.0 0.1 GO:0050333 thiamin-triphosphatase activity(GO:0050333)
0.0 0.1 GO:0008118 N-acetyllactosaminide alpha-2,3-sialyltransferase activity(GO:0008118)
0.0 0.1 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.0 0.1 GO:0004122 cystathionine beta-synthase activity(GO:0004122)
0.0 0.1 GO:0090554 phospholipid-translocating ATPase activity(GO:0004012) phosphatidylcholine-translocating ATPase activity(GO:0090554) phosphatidylserine-translocating ATPase activity(GO:0090556)
0.0 0.1 GO:0043295 glutathione binding(GO:0043295)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis