PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxd9a | dr11_v1_chr9_-_1965727_1965727 | -0.42 | 7.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_21225750 Show fit | 2.11 |
ENSDART00000139213
|
zgc:153968 |
|
chr25_+_31227747 Show fit | 1.70 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr7_+_35068036 Show fit | 1.23 |
ENSDART00000022139
|
zgc:136461 |
|
chr22_+_1049367 Show fit | 1.17 |
ENSDART00000065380
|
calcium/calmodulin-dependent protein kinase IGa |
|
chr15_+_15390882 Show fit | 0.99 |
ENSDART00000062024
|
carbonic anhydrase IV b |
|
chr19_-_657439 Show fit | 0.88 |
ENSDART00000167100
|
solute carrier family 6 (neutral amino acid transporter), member 18 |
|
chr20_-_33515890 Show fit | 0.88 |
ENSDART00000159987
|
si:dkey-65b13.13 |
|
chr13_+_45709380 Show fit | 0.82 |
ENSDART00000192862
|
si:ch211-62a1.3 |
|
chr20_-_52902693 Show fit | 0.73 |
ENSDART00000166115
ENSDART00000161050 |
cathepsin Bb |
|
chr3_+_1030479 Show fit | 0.72 |
ENSDART00000143449
|
zgc:172253 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.0 | 1.0 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 0.9 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
0.1 | 0.8 | GO:2001271 | negative regulation of execution phase of apoptosis(GO:1900118) regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis(GO:2001270) negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis(GO:2001271) |
0.1 | 0.7 | GO:0072104 | renal system vasculature morphogenesis(GO:0061438) kidney vasculature morphogenesis(GO:0061439) glomerulus vasculature morphogenesis(GO:0072103) glomerular capillary formation(GO:0072104) |
0.1 | 0.7 | GO:0006833 | water transport(GO:0006833) |
0.1 | 0.7 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.0 | 0.7 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.0 | 0.7 | GO:0007097 | nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) |
0.0 | 0.7 | GO:0009636 | response to toxic substance(GO:0009636) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0005640 | nuclear outer membrane(GO:0005640) |
0.0 | 1.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 0.7 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 0.7 | GO:0031045 | dense core granule(GO:0031045) |
0.1 | 0.6 | GO:0071914 | prominosome(GO:0071914) |
0.1 | 0.6 | GO:0036449 | microtubule minus-end(GO:0036449) |
0.1 | 0.5 | GO:0005614 | interstitial matrix(GO:0005614) |
0.1 | 0.5 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 0.5 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 0.5 | GO:0031932 | TORC2 complex(GO:0031932) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 1.4 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.2 | 1.3 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.1 | 1.0 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
0.0 | 0.9 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.2 | 0.7 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
0.1 | 0.7 | GO:0034632 | retinol transporter activity(GO:0034632) |
0.0 | 0.7 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.1 | 0.6 | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813) |
0.0 | 0.6 | GO:0030507 | spectrin binding(GO:0030507) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.4 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 0.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.0 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 0.8 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.1 | 0.6 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.0 | 0.6 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 0.5 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.1 | 0.4 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.0 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.0 | 0.4 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.0 | 0.4 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |