PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxd3a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000059280	homeobox D3a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxd3a	dr11_v1_chr9_-_1959917_1959917	-0.48	3.6e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_+_35484070 Show fit	0.45	ENSDART00000026234 ENSDART00000141675	mep1a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr19_-_6988837 Show fit	0.38	ENSDART00000145741 ENSDART00000167640	znf384l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 384 like
chr22_+_28320792 Show fit	0.33	ENSDART00000160562 ENSDART00000164138	impg2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit impg2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interphotoreceptor matrix proteoglycan 2b interphotoreceptor matrix proteoglycan 2b
chr23_+_579893 Show fit	0.30	ENSDART00000189098	BX323461.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr9_-_21918963 Show fit	0.27	ENSDART00000090782	lmo7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain 7a
chr18_+_9362455 Show fit	0.27	ENSDART00000187025	sema3ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab
chr16_+_14707960 Show fit	0.26	ENSDART00000137912	col14a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	collagen, type XIV, alpha 1a
chr21_+_8427059 Show fit	0.23	ENSDART00000143151	dennd1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 1A
chr22_-_21897203 Show fit	0.22	ENSDART00000158501 ENSDART00000105566 ENSDART00000136795	gna11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr2_-_21819421 Show fit	0.22	ENSDART00000121586	chd7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 7
chr6_+_3280939 Show fit	0.21	ENSDART00000151359	kdm4aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific demethylase 4A, genome duplicate a
chr8_-_53166975 Show fit	0.20	ENSDART00000114683	rbsn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rabenosyn, RAB effector
chr13_-_7233811 Show fit	0.19	ENSDART00000162026	ninl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ninein-like
chr14_-_33481428 Show fit	0.19	ENSDART00000147059 ENSDART00000140001 ENSDART00000124242 ENSDART00000164836 ENSDART00000190104 ENSDART00000186833 ENSDART00000180873	lamp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysosomal-associated membrane protein 2
chr1_+_52392511 Show fit	0.19	ENSDART00000144025	si:ch211-217k17.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-217k17.8
chr13_-_44630111 Show fit	0.18	ENSDART00000110092	mdga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAM domain containing glycosylphosphatidylinositol anchor 1
chr14_-_2933185 Show fit	0.17	ENSDART00000161677 ENSDART00000162446 ENSDART00000109378	si:dkey-201i24.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-201i24.6
chr3_-_34084387 Show fit	0.17	ENSDART00000155365	ighv4-3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	immunoglobulin heavy variable 4-3
chr11_+_13058613 Show fit	0.16	ENSDART00000161532	zfyve9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger, FYVE domain containing 9b
chr20_-_7072487 Show fit	0.15	ENSDART00000145954	si:ch211-121a2.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-121a2.2
chr8_-_50888806 Show fit	0.14	ENSDART00000053750	acsl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	acyl-CoA synthetase long chain family member 2
chr6_-_57539141 Show fit	0.13	ENSDART00000156967	itcha Links NCBI UniProt ZFIN ENSEMBL Google Show fit	itchy E3 ubiquitin protein ligase a
chr1_-_58036509 Show fit	0.13	ENSDART00000081122	COLGALT1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-114l13.7
chr17_-_40956035 Show fit	0.12	ENSDART00000124715	si:dkey-16j16.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-16j16.4
chr4_+_47636303 Show fit	0.12	ENSDART00000167272 ENSDART00000166961	BX324142.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_+_73085993 Show fit	0.11	ENSDART00000165749	si:ch73-170d6.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-170d6.2
chr4_+_58576146 Show fit	0.11	ENSDART00000164911	si:ch211-212k5.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-212k5.4
chr5_-_3684402 Show fit	0.11	ENSDART00000184354	FO704648.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_-_30979494 Show fit	0.11	ENSDART00000138959	si:ch211-251j10.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-251j10.3
chr10_+_43039947 Show fit	0.11	ENSDART00000193434	atg10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG10 autophagy related 10 homolog (S. cerevisiae)
chr16_+_45424907 Show fit	0.11	ENSDART00000134471	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr11_+_2391469 Show fit	0.10	ENSDART00000182121	igfbp6a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	insulin-like growth factor binding protein 6a
chr19_-_10971230 Show fit	0.10	ENSDART00000166196	LO018584.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_-_38284648 Show fit	0.10	ENSDART00000148281 ENSDART00000132621	si:ch211-14a17.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-14a17.7
chr7_-_12464412 Show fit	0.09	ENSDART00000178723	adamtsl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAMTS-like 3
chr19_-_14155781 Show fit	0.09	ENSDART00000169232	nr0b2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 0, group B, member 2b
chr8_+_22405477 Show fit	0.09	ENSDART00000148267	si:dkey-23c22.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-23c22.7
chr2_-_16380283 Show fit	0.09	ENSDART00000149992	si:dkey-231j24.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-231j24.3
chr16_+_5251768 Show fit	0.08	ENSDART00000144558	plecb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plectin b
chr13_-_35808904 Show fit	0.08	ENSDART00000171667	map3k4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitogen-activated protein kinase kinase kinase 4
chr22_+_29113796 Show fit	0.08	ENSDART00000150264	pla2g6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phospholipase A2, group VI (cytosolic, calcium-independent)
chr17_-_37054959 Show fit	0.07	ENSDART00000151921	dnmt3ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DNA (cytosine-5-)-methyltransferase 3 alpha b
chr2_+_54327160 Show fit	0.07	ENSDART00000182320	LO018508.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr23_-_1348933 Show fit	0.07	ENSDART00000168981	CABZ01078120.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr15_+_5360407 Show fit	0.07	ENSDART00000110420	or112-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family A, subfamily 112, member 1
chr7_-_46777876 Show fit	0.07	ENSDART00000193954	tshz3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	teashirt zinc finger homeobox 3b
chr15_+_41027466 Show fit	0.07	ENSDART00000075940	mtnr1ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	melatonin receptor type 1Ba
chr20_-_9095105 Show fit	0.06	ENSDART00000140792	oma1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OMA1 zinc metallopeptidase
chr8_-_25034411 Show fit	0.06	ENSDART00000135973	nfyal Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear transcription factor Y, alpha, like
chr14_-_48961056 Show fit	0.06	ENSDART00000124192	si:dkeyp-121d2.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-121d2.7
chr21_-_35419486 Show fit	0.06	ENSDART00000138529	si:dkeyp-23e4.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-23e4.3
chr16_+_45425181 Show fit	0.05	ENSDART00000168591	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr12_+_13405445 Show fit	0.05	ENSDART00000089042	kcnh4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, subfamily H (eag-related), member 4b
chr1_+_56755536 Show fit	0.05	ENSDART00000157727	CABZ01049361.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr19_+_2631565 Show fit	0.05	ENSDART00000171487	fam126a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 126, member A
chr3_+_30500968 Show fit	0.05	ENSDART00000103447	si:dkey-13n23.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-13n23.3
chr2_-_39558643 Show fit	0.04	ENSDART00000139860 ENSDART00000145231 ENSDART00000141721	cbln7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cerebellin 7
chr2_-_28671139 Show fit	0.04	ENSDART00000165272 ENSDART00000164657	dhcr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	7-dehydrocholesterol reductase
chr19_+_11217279 Show fit	0.04	ENSDART00000181859	si:ch73-109i22.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-109i22.2
chr5_+_28160503 Show fit	0.04	ENSDART00000051516	tacr1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tachykinin receptor 1a
chr5_+_66433287 Show fit	0.04	ENSDART00000170757	kntc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinetochore associated 1
chr5_-_38094130 Show fit	0.04	ENSDART00000131831	si:ch211-284e13.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-284e13.4
chr24_+_36204028 Show fit	0.03	ENSDART00000063832 ENSDART00000155260	rbbp8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinoblastoma binding protein 8
chr17_+_23298928 Show fit	0.02	ENSDART00000153652	zgc:165461 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:165461
chr10_+_39084354 Show fit	0.02	ENSDART00000158245	si:ch73-1a9.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-1a9.3
chr8_+_25034544 Show fit	0.02	ENSDART00000123300	ngrn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neugrin, neurite outgrowth associated
chr11_-_25777318 Show fit	0.02	ENSDART00000079328	plch2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phospholipase C, eta 2b
chr20_-_48898560 Show fit	0.02	ENSDART00000163071	xrn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	5'-3' exoribonuclease 2
chr4_-_71210030 Show fit	0.02	ENSDART00000186473	si:ch211-205a14.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-205a14.7
chr18_+_17827149 Show fit	0.02	ENSDART00000190237 ENSDART00000189345	ZNF423 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-216l23.1
chr20_-_46362606 Show fit	0.02	ENSDART00000153087	bmf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 modifying factor 2
chr15_+_31899312 Show fit	0.02	ENSDART00000155315	frya Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furry homolog a (Drosophila)
chr14_+_30762131 Show fit	0.02	ENSDART00000145039	si:ch211-145o7.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-145o7.3
chr3_+_27798094 Show fit	0.01	ENSDART00000075100 ENSDART00000151437	carhsp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium regulated heat stable protein 1
chr5_-_28109416 Show fit	0.01	ENSDART00000042002	si:ch211-48m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-48m9.1
chr6_+_41191482 Show fit	0.01	ENSDART00000000877	opn1mw3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	opsin 1 (cone pigments), medium-wave-sensitive, 3
chr8_-_22274222 Show fit	0.00	ENSDART00000131805	nphp4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nephronophthisis 4
chr12_+_30265802 Show fit	0.00	ENSDART00000182412	afap1l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin filament associated protein 1-like 2
chr10_+_6884627 Show fit	0.00	ENSDART00000125262 ENSDART00000121729 ENSDART00000105384	ddx4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0048755	branching morphogenesis of a nerve(GO:0048755)
0.0	0.2	GO:0034454	microtubule anchoring at centrosome(GO:0034454)
0.0	0.2	GO:0006622	protein targeting to lysosome(GO:0006622)
0.0	0.2	GO:0009303	rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.0	0.0	GO:0071314	response to cocaine(GO:0042220) cellular response to alkaloid(GO:0071312) cellular response to cocaine(GO:0071314)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0031310	integral component of vacuolar membrane(GO:0031166) intrinsic component of vacuolar membrane(GO:0031310)
0.0	0.3	GO:0033165	interphotoreceptor matrix(GO:0033165)
0.0	0.3	GO:0005614	interstitial matrix(GO:0005614)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019777	Atg12 transferase activity(GO:0019777)
0.0	0.2	GO:0031826	type 2A serotonin receptor binding(GO:0031826)
0.0	0.3	GO:0038191	neuropilin binding(GO:0038191)
0.0	0.2	GO:0051864	histone demethylase activity (H3-K36 specific)(GO:0051864)
0.0	0.1	GO:0047676	arachidonate-CoA ligase activity(GO:0047676)
0.0	0.0	GO:0016496	substance P receptor activity(GO:0016496)
0.0	0.1	GO:0008502	melatonin receptor activity(GO:0008502)