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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxb7a

Z-value: 0.47

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Transcription factors associated with hoxb7a

Gene Symbol Gene ID Gene Info
hoxb7a
ENSDARG00000056030 homeobox B7a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb7adr11_v1_chr3_+_23691847_23691847-0.253.1e-01Click!

Activity profile of hoxb7a motif

Sorted Z-values of hoxb7a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_1139378 1.02 ENSDART00000170033
slc15a1a
solute carrier family 15 (oligopeptide transporter), member 1a
chr3_-_31079186 0.73 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr5_-_30620625 0.60 ENSDART00000098273
tcnl
transcobalamin like
chr15_-_40246396 0.58 ENSDART00000063777
kcnj13
potassium inwardly-rectifying channel, subfamily J, member 13
chr25_-_35599887 0.52 ENSDART00000153827
clpxb
caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr4_-_1801519 0.51 ENSDART00000188604
ENSDART00000135749
nudt4b
nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr25_-_19420949 0.46 ENSDART00000181338
map1ab
microtubule-associated protein 1Ab
chr12_+_16168342 0.45 ENSDART00000079326
ENSDART00000170024
lrp2b
low density lipoprotein receptor-related protein 2b
chr4_-_2545310 0.45 ENSDART00000150619
ENSDART00000140760
e2f7
E2F transcription factor 7
chr15_+_28318005 0.45 ENSDART00000175860
myo1cb
myosin Ic, paralog b
chr16_-_12173399 0.44 ENSDART00000142574
clstn3
calsyntenin 3
chr2_-_54039293 0.43 ENSDART00000166013
abhd8a
abhydrolase domain containing 8a
chr11_-_45141309 0.41 ENSDART00000181736
cant1b
calcium activated nucleotidase 1b
chr11_+_705727 0.38 ENSDART00000165366
timp4.2
TIMP metallopeptidase inhibitor 4, tandem duplicate 2
chr3_-_36602379 0.38 ENSDART00000161501
ENSDART00000162396
rrn3
RRN3 homolog, RNA polymerase I transcription factor
chr19_+_5480327 0.37 ENSDART00000148794
jupb
junction plakoglobin b
chr6_-_43677125 0.37 ENSDART00000150128
foxp1b
forkhead box P1b
chr21_-_13123176 0.37 ENSDART00000144866
ENSDART00000024616
fam219aa
family with sequence similarity 219, member Aa
chr13_-_5252559 0.37 ENSDART00000181652
si:dkey-78p8.1
si:dkey-78p8.1
chr22_-_19102256 0.34 ENSDART00000171866
ENSDART00000166295
polrmt
polymerase (RNA) mitochondrial (DNA directed)
chr6_+_24398907 0.33 ENSDART00000167482
tgfbr3
transforming growth factor, beta receptor III
chr17_+_30369396 0.33 ENSDART00000076611
greb1
growth regulation by estrogen in breast cancer 1
chr12_+_47698356 0.33 ENSDART00000112010
lzts2b
leucine zipper, putative tumor suppressor 2b
chr8_+_7801060 0.31 ENSDART00000161618
tfe3a
transcription factor binding to IGHM enhancer 3a
chr25_+_14087045 0.30 ENSDART00000155770
actc1c
actin, alpha, cardiac muscle 1c
chr18_+_45781516 0.30 ENSDART00000168840
rpl35a
ribosomal protein L35a
chr14_-_4556896 0.29 ENSDART00000044678
ENSDART00000192863
GABRA2
gamma-aminobutyric acid type A receptor alpha2 subunit
chr24_+_7800486 0.28 ENSDART00000145504
ptprh
protein tyrosine phosphatase, receptor type, h
chr10_-_13343831 0.26 ENSDART00000135941
il11ra
interleukin 11 receptor, alpha
chr18_+_2228737 0.25 ENSDART00000165301
rab27a
RAB27A, member RAS oncogene family
chr17_+_44697604 0.24 ENSDART00000156625
pgfb
placental growth factor b
chr5_-_16218777 0.24 ENSDART00000141698
kremen1
kringle containing transmembrane protein 1
chr21_+_34088110 0.23 ENSDART00000145123
ENSDART00000029599
ENSDART00000147519
mtmr1b
myotubularin related protein 1b
chr17_+_31914877 0.22 ENSDART00000177801
FAM196A (1 of many)
family with sequence similarity 196 member A
chr15_+_857148 0.22 ENSDART00000156949
si:dkey-7i4.13
si:dkey-7i4.13
chr16_+_40024883 0.22 ENSDART00000110100
hint3
histidine triad nucleotide binding protein 3
chr13_-_10945288 0.22 ENSDART00000114315
ENSDART00000164667
ENSDART00000159482
abcg8
ATP-binding cassette, sub-family G (WHITE), member 8
chr4_-_63165848 0.21 ENSDART00000183789
CR450780.1

chr13_+_10945337 0.20 ENSDART00000091845
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5
chr15_-_14552101 0.20 ENSDART00000171169
numbl
numb homolog (Drosophila)-like
chr18_+_45781115 0.19 ENSDART00000151699
ENSDART00000179887
rpl35a
ribosomal protein L35a
chr3_-_50443607 0.18 ENSDART00000074036
rcvrna
recoverin a
chr12_+_20641102 0.17 ENSDART00000152964
calcoco2
calcium binding and coiled-coil domain 2
chr25_+_13620555 0.17 ENSDART00000163642
si:ch211-172l8.4
si:ch211-172l8.4
chr10_+_11261576 0.17 ENSDART00000155333
hsdl2
hydroxysteroid dehydrogenase like 2
chr21_+_8276989 0.17 ENSDART00000028265
nr5a1b
nuclear receptor subfamily 5, group A, member 1b
chr12_+_31735159 0.17 ENSDART00000185442
RNF157
si:dkey-49c17.3
chr9_+_54039006 0.16 ENSDART00000112441
tlr7
toll-like receptor 7
chr23_+_39461989 0.16 ENSDART00000184761
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr7_+_7696665 0.16 ENSDART00000091099
ino80b
INO80 complex subunit B
chr5_+_71802014 0.15 ENSDART00000124939
ENSDART00000097164
LHX3
LIM homeobox 3
chr18_-_33080454 0.15 ENSDART00000191907
v2ra18
vomeronasal 2 receptor, a18
chr5_-_67750907 0.15 ENSDART00000172097
b4galt4
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4
chr23_+_39462208 0.15 ENSDART00000136707
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr2_-_1486023 0.14 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr18_+_14619544 0.14 ENSDART00000010821
utp4
UTP4, small subunit processome component
chr18_+_34362608 0.14 ENSDART00000131478
kcnab1a
potassium voltage-gated channel, shaker-related subfamily, beta member 1 a
chr12_+_48803098 0.13 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr22_-_22301672 0.12 ENSDART00000111711
chaf1a
chromatin assembly factor 1, subunit A (p150)
chr8_-_12867434 0.12 ENSDART00000081657
slc2a6
solute carrier family 2 (facilitated glucose transporter), member 6
chr17_+_51682429 0.12 ENSDART00000004379
nol10
nucleolar protein 10
chr7_+_69019851 0.11 ENSDART00000162891
CABZ01057488.1

chr8_-_12867128 0.11 ENSDART00000142201
slc2a6
solute carrier family 2 (facilitated glucose transporter), member 6
chr1_+_19303241 0.10 ENSDART00000129970
si:dkeyp-118a3.2
si:dkeyp-118a3.2
chr6_+_21992820 0.10 ENSDART00000147507
thumpd3
THUMP domain containing 3
chr8_+_25034544 0.09 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr4_-_73739119 0.09 ENSDART00000108669
zgc:171551
zgc:171551
chr23_-_36857964 0.09 ENSDART00000188822
ENSDART00000134061
ENSDART00000093061
hipk1a
homeodomain interacting protein kinase 1a
chr4_+_70151160 0.08 ENSDART00000111816
si:dkey-3h2.4
si:dkey-3h2.4
chr5_-_23675222 0.08 ENSDART00000135153
TBC1D8B
si:dkey-110k5.6
chr4_+_77971104 0.08 ENSDART00000188609
zgc:113921
zgc:113921
chr10_+_43039947 0.07 ENSDART00000193434
atg10
ATG10 autophagy related 10 homolog (S. cerevisiae)
chr13_+_12299997 0.07 ENSDART00000108535
gabrb1
gamma-aminobutyric acid (GABA) A receptor, beta 1
chr17_+_25481466 0.06 ENSDART00000139451
aim1a
crystallin beta-gamma domain containing 1a
chr23_+_28809002 0.06 ENSDART00000134121
ENSDART00000183661
pex14
peroxisomal biogenesis factor 14
chr19_+_2631565 0.06 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr10_-_11261565 0.05 ENSDART00000146727
ptbp3
polypyrimidine tract binding protein 3
chr24_-_36680261 0.05 ENSDART00000059507
ccr10
chemokine (C-C motif) receptor 10
chr5_+_34623107 0.04 ENSDART00000184126
enc1
ectodermal-neural cortex 1
chr3_+_27798094 0.03 ENSDART00000075100
ENSDART00000151437
carhsp1
calcium regulated heat stable protein 1
chr13_-_2440622 0.03 ENSDART00000102767
ENSDART00000172616
fbxo9
F-box protein 9
chr17_+_16090436 0.03 ENSDART00000136059
ENSDART00000138734
znf395a
zinc finger protein 395a
chr12_+_20641471 0.03 ENSDART00000133654
calcoco2
calcium binding and coiled-coil domain 2
chr18_-_15551360 0.02 ENSDART00000159915
ENSDART00000172690
ppfibp1b
PTPRF interacting protein, binding protein 1b (liprin beta 1)
chr22_-_27296889 0.01 ENSDART00000155724
si:dkey-208m12.3
si:dkey-208m12.3
chr23_+_4709607 0.01 ENSDART00000166503
ENSDART00000158752
ENSDART00000163860
ENSDART00000172739
raf1a
raf1a
Raf-1 proto-oncogene, serine/threonine kinase a
Raf-1 proto-oncogene, serine/threonine kinase a

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb7a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0051876 pigment granule dispersal(GO:0051876)
0.1 1.0 GO:0006857 oligopeptide transport(GO:0006857)
0.1 0.5 GO:1901907 diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.1 0.3 GO:0019417 sulfur oxidation(GO:0019417)
0.1 0.5 GO:0032875 regulation of DNA endoreduplication(GO:0032875) positive regulation of DNA endoreduplication(GO:0032877) DNA endoreduplication(GO:0042023)
0.1 0.4 GO:0002159 desmosome assembly(GO:0002159)
0.1 0.4 GO:2000001 regulation of DNA damage checkpoint(GO:2000001)
0.1 0.4 GO:0051045 negative regulation of membrane protein ectodomain proteolysis(GO:0051045)
0.1 0.2 GO:0034154 toll-like receptor 7 signaling pathway(GO:0034154)
0.0 0.2 GO:0048903 anterior lateral line neuromast hair cell differentiation(GO:0048903)
0.0 0.3 GO:0006390 transcription from mitochondrial promoter(GO:0006390)
0.0 0.3 GO:0051013 microtubule severing(GO:0051013)
0.0 0.1 GO:1901017 negative regulation of potassium ion transmembrane transporter activity(GO:1901017) negative regulation of potassium ion transmembrane transport(GO:1901380) negative regulation of delayed rectifier potassium channel activity(GO:1902260) negative regulation of voltage-gated potassium channel activity(GO:1903817)
0.0 0.2 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0 0.3 GO:0045670 regulation of osteoclast differentiation(GO:0045670)
0.0 0.2 GO:0060754 mast cell chemotaxis(GO:0002551) regulation of mast cell chemotaxis(GO:0060753) positive regulation of mast cell chemotaxis(GO:0060754) mast cell migration(GO:0097531)
0.0 0.5 GO:0031114 regulation of microtubule depolymerization(GO:0031114)
0.0 0.2 GO:0036368 cone photoresponse recovery(GO:0036368)
0.0 0.7 GO:0006368 transcription elongation from RNA polymerase II promoter(GO:0006368)
0.0 0.4 GO:0042632 cholesterol homeostasis(GO:0042632) sterol homeostasis(GO:0055092)
0.0 0.3 GO:0021983 pituitary gland development(GO:0021983)
0.0 0.1 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0030891 VCB complex(GO:0030891)
0.0 0.1 GO:0033186 CAF-1 complex(GO:0033186)
0.0 0.4 GO:0030057 desmosome(GO:0030057)
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.1 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.4 GO:0043596 nuclear replication fork(GO:0043596)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 GO:0071916 dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916)
0.1 0.5 GO:0008486 endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.5 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217)
0.1 0.3 GO:0050431 transforming growth factor beta binding(GO:0050431)
0.0 0.2 GO:0001042 RNA polymerase I core binding(GO:0001042)
0.0 0.2 GO:0055056 D-glucose transmembrane transporter activity(GO:0055056)
0.0 0.4 GO:0008191 metalloendopeptidase inhibitor activity(GO:0008191)
0.0 0.1 GO:0019777 Atg12 transferase activity(GO:0019777)
0.0 0.2 GO:0005172 vascular endothelial growth factor receptor binding(GO:0005172)
0.0 0.6 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.4 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.0 0.1 GO:0045294 alpha-catenin binding(GO:0045294)
0.0 0.3 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062)
0.0 0.4 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID WNT SIGNALING PATHWAY Wnt signaling network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.2 REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS Genes involved in Facilitative Na+-independent glucose transporters
0.0 0.4 REACTOME GABA A RECEPTOR ACTIVATION Genes involved in GABA A receptor activation
0.0 0.2 REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR Genes involved in Trafficking and processing of endosomal TLR
0.0 0.2 REACTOME INSULIN SYNTHESIS AND PROCESSING Genes involved in Insulin Synthesis and Processing