PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb4a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000013533	homeobox B4a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxb4a	dr11_v1_chr3_+_23710839_23710839	0.17	4.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr25_-_29072162 Show fit	0.29	ENSDART00000169269	arid3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AT rich interactive domain 3B (BRIGHT-like)
chr19_+_14059349 Show fit	0.28	ENSDART00000166230	tpbga Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trophoblast glycoprotein a
chr21_+_20901505 Show fit	0.26	ENSDART00000132741	c7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	complement component 7b
chr12_+_28854963 Show fit	0.25	ENSDART00000153227	nfe2l1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear factor, erythroid 2-like 1b
chr12_-_26430507 Show fit	0.23	ENSDART00000153214	synpo2lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptopodin 2-like b
chr13_+_18321140 Show fit	0.19	ENSDART00000180947	eif4e1c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 4E family member 1c
chr17_+_27434626 Show fit	0.19	ENSDART00000052446	vgll2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vestigial-like family member 2b
chr21_-_20328375 Show fit	0.18	ENSDART00000079593	slc26a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 26 (anion exchanger), member 1
chr20_-_26491567 Show fit	0.17	ENSDART00000147154	mthfd1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
chr3_+_27027781 Show fit	0.17	ENSDART00000065495	emp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	epithelial membrane protein 2
chr17_-_114121 Show fit	0.17	ENSDART00000172408 ENSDART00000157784	arhgap11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 11A
chr12_-_20616160 Show fit	0.15	ENSDART00000105362	snx11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting nexin 11
chr9_-_15789526 Show fit	0.15	ENSDART00000141318	si:dkey-103d23.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-103d23.3
chr2_+_44972720 Show fit	0.13	ENSDART00000075146	alg3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
chr3_+_33300522 Show fit	0.12	ENSDART00000114023	hspb9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heat shock protein, alpha-crystallin-related, 9
chr17_-_23241393 Show fit	0.09	ENSDART00000190697	AL935174.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr10_-_20445549 Show fit	0.09	ENSDART00000064613	loxl2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysyl oxidase-like 2a
chr13_-_33207367 Show fit	0.08	ENSDART00000146138 ENSDART00000109667 ENSDART00000182741	trip11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thyroid hormone receptor interactor 11
chr5_+_32924669 Show fit	0.08	ENSDART00000085219	lmo4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain only 4a
chr19_+_20177208 Show fit	0.08	ENSDART00000166807	tra2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transformer 2 alpha homolog
chr6_-_57635577 Show fit	0.08	ENSDART00000168708	cbfa2t2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	core-binding factor, runt domain, alpha subunit 2; translocated to, 2
chr23_+_27756984 Show fit	0.07	ENSDART00000137103	kmt2d Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific methyltransferase 2D
chr11_-_13341483 Show fit	0.07	ENSDART00000164978	mast3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule associated serine/threonine kinase 3b
chr21_+_22423286 Show fit	0.07	ENSDART00000133190	capslb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcyphosine-like b
chr9_+_16449398 Show fit	0.07	ENSDART00000006787	epha3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eph receptor A3
chr4_+_43408004 Show fit	0.07	ENSDART00000150476	si:dkeyp-53e4.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-53e4.2
chr14_+_46274611 Show fit	0.07	ENSDART00000134363	cabp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 2b
chr2_+_27010439 Show fit	0.06	ENSDART00000030547	cdh7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cadherin 7a
chr6_-_43047774 Show fit	0.06	ENSDART00000161722	glyctk Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerate kinase
chr23_+_384850 Show fit	0.06	ENSDART00000114000	zgc:101663 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:101663
chr23_+_13814978 Show fit	0.06	ENSDART00000090864	lmod3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leiomodin 3 (fetal)
chr20_+_51479263 Show fit	0.06	ENSDART00000148798	tlr5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	toll-like receptor 5a
chr19_+_816208 Show fit	0.06	ENSDART00000093304	nrm Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nurim
chr15_+_25489406 Show fit	0.05	ENSDART00000162482	zgc:152863 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:152863
chr11_-_13341051 Show fit	0.05	ENSDART00000121872	mast3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule associated serine/threonine kinase 3b
chr6_-_28345002 Show fit	0.05	ENSDART00000158955	si:busm1-105l16.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:busm1-105l16.2
chr7_+_13988075 Show fit	0.05	ENSDART00000186812	furina Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furin (paired basic amino acid cleaving enzyme) a
chr7_-_6268373 Show fit	0.04	ENSDART00000183990	si:ch211-220f21.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-220f21.2
chr17_-_8727699 Show fit	0.04	ENSDART00000049236 ENSDART00000149505 ENSDART00000148619 ENSDART00000149668 ENSDART00000148827	ctbp2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	C-terminal binding protein 2a
chr16_-_32672883 Show fit	0.04	ENSDART00000124515 ENSDART00000190920 ENSDART00000188776	pnisr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PNN-interacting serine/arginine-rich protein
chr12_+_28854410 Show fit	0.04	ENSDART00000152991	nfe2l1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear factor, erythroid 2-like 1b
chr20_-_32188897 Show fit	0.03	ENSDART00000133887	si:ch211-51a19.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-51a19.5
chr1_-_47431453 Show fit	0.03	ENSDART00000101104	gja5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gap junction protein, alpha 5b
chr15_-_26552652 Show fit	0.03	ENSDART00000152336	serpinf2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2b
chr2_-_54039293 Show fit	0.03	ENSDART00000166013	abhd8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	abhydrolase domain containing 8a
chr17_-_19626357 Show fit	0.03	ENSDART00000011432	reep3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	receptor accessory protein 3a
chr5_-_64103863 Show fit	0.03	ENSDART00000135014 ENSDART00000083684	pappab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pregnancy-associated plasma protein A, pappalysin 1b
chr3_+_23752150 Show fit	0.03	ENSDART00000146636	hoxb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox B2a
chr18_-_12957451 Show fit	0.03	ENSDART00000140403	srgap1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SLIT-ROBO Rho GTPase activating protein 1a
chr1_+_1712140 Show fit	0.02	ENSDART00000081047	atp1a1a.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1
chr25_+_5972690 Show fit	0.02	ENSDART00000067517	si:ch211-11i22.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-11i22.4
chr2_+_23731194 Show fit	0.02	ENSDART00000155747	slc22a13a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 22 member 13a
chr6_-_49655879 Show fit	0.02	ENSDART00000191594	apcdd1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenomatosis polyposis coli down-regulated 1-like
chr5_+_20112032 Show fit	0.02	ENSDART00000130554	isg15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ISG15 ubiquitin-like modifier
chr13_-_22961605 Show fit	0.02	ENSDART00000143112 ENSDART00000057641	tspan15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetraspanin 15
chr3_-_51109286 Show fit	0.02	ENSDART00000172010	si:ch211-148f13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-148f13.1
chr23_-_3721444 Show fit	0.01	ENSDART00000141682	nudt3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nudix (nucleoside diphosphate linked moiety X)-type motif 3a
chr7_+_27317174 Show fit	0.01	ENSDART00000193058	sox6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SRY (sex determining region Y)-box 6
chr19_+_28256076 Show fit	0.01	ENSDART00000133354	irx4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	iroquois homeobox 4b
chr3_+_19687217 Show fit	0.01	ENSDART00000141937	tlk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tousled-like kinase 2
chr6_+_29791164 Show fit	0.01	ENSDART00000017424	ptmaa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prothymosin, alpha a
chr6_-_29105727 Show fit	0.01	ENSDART00000184355	fam69ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 69, member Ab
chr7_+_35268880 Show fit	0.01	ENSDART00000182231	dpep2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dipeptidase 2
chr15_+_17251191 Show fit	0.01	ENSDART00000156587	si:ch73-223p23.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-223p23.2
chr11_+_18205766 Show fit	0.01	ENSDART00000175559	tmcc1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane and coiled-coil domain family 1b
chr15_-_15968883 Show fit	0.01	ENSDART00000166583 ENSDART00000154042	synrg Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synergin, gamma
chr6_+_18367388 Show fit	0.00	ENSDART00000163394	dgke Links NCBI UniProt ZFIN ENSEMBL Google Show fit	diacylglycerol kinase, epsilon
chr18_-_25401002 Show fit	0.00	ENSDART00000055567	gnrhr4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gonadotropin releasing hormone receptor 4
chr20_+_51478939 Show fit	0.00	ENSDART00000149758	tlr5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	toll-like receptor 5a
chr4_-_17257435 Show fit	0.00	ENSDART00000131973	lrmp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lymphoid-restricted membrane protein
chr13_+_30912385 Show fit	0.00	ENSDART00000182642	drgx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dorsal root ganglia homeobox

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0060829	negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.1	0.2	GO:0003071	renal system process involved in regulation of blood volume(GO:0001977) renal system process involved in regulation of systemic arterial blood pressure(GO:0003071) regulation of glomerular filtration(GO:0003093)
0.0	0.2	GO:0019532	oxalate transport(GO:0019532)
0.0	0.1	GO:0007509	mesoderm migration involved in gastrulation(GO:0007509)
0.0	0.1	GO:1902455	negative regulation of stem cell population maintenance(GO:1902455)
0.0	0.1	GO:0034146	toll-like receptor 5 signaling pathway(GO:0034146)
0.0	0.2	GO:0035999	tetrahydrofolate interconversion(GO:0035999)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0005579	membrane attack complex(GO:0005579)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000033	alpha-1,3-mannosyltransferase activity(GO:0000033)
0.0	0.2	GO:0004329	formate-tetrahydrofolate ligase activity(GO:0004329)
0.0	0.1	GO:0008454	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)
0.0	0.1	GO:0008887	glycerate kinase activity(GO:0008887)
0.0	0.2	GO:0000340	RNA 7-methylguanosine cap binding(GO:0000340)