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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxa11a

Z-value: 0.37

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Transcription factors associated with hoxa11a

Gene Symbol Gene ID Gene Info
hoxa11a
ENSDARG00000104162 homeobox A11a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxa11adr11_v1_chr19_+_19737214_197373000.691.2e-03Click!

Activity profile of hoxa11a motif

Sorted Z-values of hoxa11a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_+_13128180 0.92 ENSDART00000081426
odf2a
outer dense fiber of sperm tails 2a
chr13_-_25196758 0.69 ENSDART00000184722
adka
adenosine kinase a
chr11_+_2198831 0.59 ENSDART00000160515
hoxc6b
homeobox C6b
chr12_-_26851726 0.47 ENSDART00000047724
zeb1b
zinc finger E-box binding homeobox 1b
chr24_-_21090447 0.46 ENSDART00000136507
ENSDART00000140786
ENSDART00000184841
qtrt2
queuine tRNA-ribosyltransferase accessory subunit 2
chr23_+_36087219 0.45 ENSDART00000154825
hoxc3a
homeobox C3a
chr21_+_13127742 0.43 ENSDART00000179221
odf2a
outer dense fiber of sperm tails 2a
chr7_+_20524064 0.42 ENSDART00000052917
slc3a2a
solute carrier family 3 (amino acid transporter heavy chain), member 2a
chr3_-_40254634 0.41 ENSDART00000154562
top3a
DNA topoisomerase III alpha
chr1_-_462165 0.39 ENSDART00000152799
si:ch73-244f7.3
si:ch73-244f7.3
chr19_+_7424347 0.36 ENSDART00000004622
sf3b4
splicing factor 3b, subunit 4
chr5_-_31857345 0.34 ENSDART00000112546
pkn3
protein kinase N3
chr2_-_6065416 0.33 ENSDART00000037698
uck2b
uridine-cytidine kinase 2b
chr2_-_43851915 0.32 ENSDART00000146493
zeb1a
zinc finger E-box binding homeobox 1a
chr7_-_18508815 0.32 ENSDART00000173539
rgs12a
regulator of G protein signaling 12a
chr9_-_3671911 0.31 ENSDART00000102900
sp5a
Sp5 transcription factor a
chr15_+_8767650 0.31 ENSDART00000033871
ap2s1
adaptor-related protein complex 2, sigma 1 subunit
chr19_-_22507715 0.29 ENSDART00000160153
pleca
plectin a
chr1_+_45056371 0.27 ENSDART00000073689
ENSDART00000167309
btr01
bloodthirsty-related gene family, member 1
chr20_-_37820939 0.27 ENSDART00000032978
nsl1
NSL1, MIS12 kinetochore complex component
chr7_+_20966434 0.27 ENSDART00000185570
efnb3b
ephrin-B3b
chr18_-_2433011 0.27 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr15_+_9297340 0.25 ENSDART00000055554
slc37a4a
solute carrier family 37 (glucose-6-phosphate transporter), member 4a
chr22_+_2239974 0.25 ENSDART00000141993
znf1144
zinc finger protein 1144
chr5_-_31856681 0.24 ENSDART00000187817
pkn3
protein kinase N3
chr12_+_27117609 0.24 ENSDART00000076154
hoxb8b
homeobox B8b
chr12_-_11560794 0.24 ENSDART00000149098
ENSDART00000169975
plekha1b
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b
chr20_+_43379029 0.24 ENSDART00000142486
ENSDART00000186486
unc93a
unc-93 homolog A
chr3_+_36284986 0.24 ENSDART00000059533
wipi1
WD repeat domain, phosphoinositide interacting 1
chr15_+_44093286 0.23 ENSDART00000114352
zgc:112998
zgc:112998
chr16_-_6205790 0.22 ENSDART00000038495
ctnnb1
catenin (cadherin-associated protein), beta 1
chr4_+_39368978 0.22 ENSDART00000160640
si:dkey-261o4.1
si:dkey-261o4.1
chr2_-_43852207 0.22 ENSDART00000192627
zeb1a
zinc finger E-box binding homeobox 1a
chr9_-_2892045 0.22 ENSDART00000137201
cdca7a
cell division cycle associated 7a
chr12_+_33361948 0.20 ENSDART00000124982
fasn
fatty acid synthase
chr24_+_21540842 0.20 ENSDART00000091529
wasf3b
WAS protein family, member 3b
chr1_+_36722122 0.20 ENSDART00000111566
tmem184c
transmembrane protein 184C
chr13_+_35472803 0.19 ENSDART00000011583
mkks
McKusick-Kaufman syndrome
chr11_+_24716837 0.19 ENSDART00000145217
zgc:153953
zgc:153953
chr16_+_20910186 0.19 ENSDART00000046766
hoxa10b
homeobox A10b
chr4_-_20108833 0.19 ENSDART00000100867
fam3c
family with sequence similarity 3, member C
chr12_-_34713690 0.19 ENSDART00000180807
bahcc1b
BAH domain and coiled-coil containing 1b
chr14_-_48348973 0.19 ENSDART00000185822
CABZ01080056.1

chr20_+_34671386 0.18 ENSDART00000152836
ENSDART00000138226
elp3
elongator acetyltransferase complex subunit 3
chr5_+_59397348 0.18 ENSDART00000175642
clip2
CAP-GLY domain containing linker protein 2
chr8_-_12432604 0.18 ENSDART00000133350
ENSDART00000140699
ENSDART00000101174
traf1
TNF receptor-associated factor 1
chr5_+_59397739 0.18 ENSDART00000148659
clip2
CAP-GLY domain containing linker protein 2
chr13_+_42309688 0.17 ENSDART00000158367
ide
insulin-degrading enzyme
chr6_+_49551614 0.17 ENSDART00000022581
rab22a
RAB22A, member RAS oncogene family
chr2_+_43851983 0.17 ENSDART00000126413
nlrb5
NOD-like receptor family B, member 5
chr18_-_17087138 0.16 ENSDART00000135597
zc3h18
zinc finger CCCH-type containing 18
chr6_+_33885828 0.16 ENSDART00000179994
gpbp1l1
GC-rich promoter binding protein 1-like 1
chr9_-_2892250 0.16 ENSDART00000140695
cdca7a
cell division cycle associated 7a
chr25_-_18002498 0.16 ENSDART00000158688
cep290
centrosomal protein 290
chr11_+_25560632 0.15 ENSDART00000033914
mbd1b
methyl-CpG binding domain protein 1b
chr12_-_34713888 0.15 ENSDART00000153272
bahcc1b
BAH domain and coiled-coil containing 1b
chr17_+_17764979 0.15 ENSDART00000105013
alkbh1
alkB homolog 1, histone H2A dioxygenase
chr2_-_13254821 0.13 ENSDART00000022621
kdsr
3-ketodihydrosphingosine reductase
chr23_-_1658980 0.13 ENSDART00000186227
CU693481.1

chr17_-_31695217 0.12 ENSDART00000104332
ENSDART00000143090
lin52
lin-52 DREAM MuvB core complex component
chr20_+_37820992 0.12 ENSDART00000064692
tatdn3
TatD DNase domain containing 3
chr7_-_30624435 0.11 ENSDART00000173828
rnf111
ring finger protein 111
chr3_-_18737126 0.11 ENSDART00000055767
e4f1
E4F transcription factor 1
chr24_-_31223232 0.11 ENSDART00000164155
alg14
ALG14, UDP-N-acetylglucosaminyltransferase subunit
chr13_+_45431660 0.10 ENSDART00000099950
syf2
SYF2 pre-mRNA-splicing factor
chr17_+_4368859 0.09 ENSDART00000055385
crls1
cardiolipin synthase 1
chr6_+_3730843 0.09 ENSDART00000019630
FO704755.1

chr14_-_31060082 0.09 ENSDART00000111601
ENSDART00000161113
mbnl3
muscleblind-like splicing regulator 3
chr13_-_9875538 0.08 ENSDART00000041609
tm9sf3
transmembrane 9 superfamily member 3
chr24_+_20658942 0.07 ENSDART00000142848
sec22c
SEC22 homolog C, vesicle trafficking protein
chr13_+_29925397 0.07 ENSDART00000123482
cuedc2
CUE domain containing 2
chr25_-_18002937 0.07 ENSDART00000149696
cep290
centrosomal protein 290
chr20_-_46541834 0.07 ENSDART00000060685
ENSDART00000181720
tmed10
transmembrane p24 trafficking protein 10
chr2_-_3158919 0.06 ENSDART00000098394
wnt3a
wingless-type MMTV integration site family, member 3A
chr11_+_25560072 0.06 ENSDART00000124131
ENSDART00000147179
mbd1b
methyl-CpG binding domain protein 1b
chr24_-_40009446 0.06 ENSDART00000087422
aoc1
amine oxidase, copper containing 1
chr16_-_47426482 0.06 ENSDART00000148631
ENSDART00000149723
sept7b
septin 7b
chr24_+_20658760 0.05 ENSDART00000188362
sec22c
SEC22 homolog C, vesicle trafficking protein
chr9_-_29039506 0.05 ENSDART00000100744
tmem177
transmembrane protein 177
chr11_+_41135055 0.05 ENSDART00000173252
camta1
calmodulin binding transcription activator 1
chr1_-_29061285 0.04 ENSDART00000053933
ENSDART00000142350
ENSDART00000192615
gemin8
gem (nuclear organelle) associated protein 8
chr8_+_23861461 0.04 ENSDART00000037109
srpk1a
SRSF protein kinase 1a
chr2_-_13254594 0.04 ENSDART00000155671
kdsr
3-ketodihydrosphingosine reductase
chr2_-_9259283 0.04 ENSDART00000133092
st6galnac5a
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a
chr17_+_44463230 0.04 ENSDART00000130311
naa30
N(alpha)-acetyltransferase 30, NatC catalytic subunit
chr11_-_40257225 0.04 ENSDART00000139009
TRIM62 (1 of many)
si:ch211-193i15.2
chr22_+_10646928 0.03 ENSDART00000038465
rassf1
Ras association (RalGDS/AF-6) domain family 1
chr19_-_33370271 0.03 ENSDART00000132628
nkd3l
naked cuticle homolog 3, like
chr7_+_9308625 0.03 ENSDART00000084598
selenos
selenoprotein S
chr16_-_10316359 0.03 ENSDART00000104025
flot1b
flotillin 1b
chr6_-_53334259 0.03 ENSDART00000172465
gnb1b
guanine nucleotide binding protein (G protein), beta polypeptide 1b
chr15_-_14552101 0.01 ENSDART00000171169
numbl
numb homolog (Drosophila)-like
chr5_+_32932357 0.00 ENSDART00000192397
lmo4a
LIM domain only 4a

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxa11a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0070587 regulation of cell-cell adhesion involved in gastrulation(GO:0070587)
0.1 0.7 GO:0044209 AMP salvage(GO:0044209)
0.1 0.2 GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.1 0.2 GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis.(GO:0002926)
0.0 0.2 GO:0036344 platelet formation(GO:0030220) platelet morphogenesis(GO:0036344)
0.0 0.3 GO:0044211 CTP salvage(GO:0044211)
0.0 0.3 GO:0046958 nonassociative learning(GO:0046958) habituation(GO:0046959)
0.0 0.4 GO:0060142 regulation of syncytium formation by plasma membrane fusion(GO:0060142)
0.0 0.2 GO:0042769 DNA damage response, detection of DNA damage(GO:0042769)
0.0 0.2 GO:0045721 negative regulation of gluconeogenesis(GO:0045721)
0.0 0.1 GO:0035513 oxidative RNA demethylation(GO:0035513)
0.0 0.4 GO:0006265 DNA topological change(GO:0006265)
0.0 0.4 GO:0048026 positive regulation of mRNA splicing, via spliceosome(GO:0048026)
0.0 0.2 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.0 0.4 GO:0018023 peptidyl-lysine trimethylation(GO:0018023)
0.0 0.1 GO:0030579 ubiquitin-dependent SMAD protein catabolic process(GO:0030579)
0.0 0.2 GO:0051877 pigment granule aggregation in cell center(GO:0051877)
0.0 0.2 GO:0050435 beta-amyloid metabolic process(GO:0050435)
0.0 0.3 GO:0031581 hemidesmosome assembly(GO:0031581)
0.0 0.2 GO:2000601 positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0 0.3 GO:0021654 rhombomere boundary formation(GO:0021654)
0.0 0.1 GO:0046677 response to antibiotic(GO:0046677)
0.0 0.1 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) cardiolipin biosynthetic process(GO:0032049)
0.0 0.1 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.0 GO:1901890 positive regulation of cell junction assembly(GO:1901890)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0000444 MIS12/MIND type complex(GO:0000444)
0.0 0.2 GO:0005913 cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915)
0.0 0.2 GO:1902636 kinociliary basal body(GO:1902636)
0.0 0.3 GO:0030122 AP-2 adaptor complex(GO:0030122)
0.0 0.2 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.0 0.2 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.3 GO:0030056 hemidesmosome(GO:0030056)
0.0 0.2 GO:0034451 centriolar satellite(GO:0034451)
0.0 0.2 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.0 0.6 GO:0097610 cleavage furrow(GO:0032154) cell surface furrow(GO:0097610)
0.0 0.4 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.4 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.2 GO:0031209 SCAR complex(GO:0031209)
0.0 0.0 GO:0031417 NatC complex(GO:0031417)
0.0 0.1 GO:0000974 Prp19 complex(GO:0000974)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.3 GO:0004849 uridine kinase activity(GO:0004849)
0.0 0.1 GO:0032184 SUMO polymer binding(GO:0032184)
0.0 0.1 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.0 0.4 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.0 0.2 GO:0045294 alpha-catenin binding(GO:0045294)
0.0 0.2 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.6 GO:0004697 protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698)
0.0 0.3 GO:0030506 ankyrin binding(GO:0030506)
0.0 0.2 GO:0080025 phosphatidylinositol-3,5-bisphosphate binding(GO:0080025)
0.0 0.3 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0 0.3 GO:0046875 ephrin receptor binding(GO:0046875)
0.0 0.1 GO:0008131 primary amine oxidase activity(GO:0008131)
0.0 0.4 GO:0051010 microtubule plus-end binding(GO:0051010)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID WNT CANONICAL PATHWAY Canonical Wnt signaling pathway
0.0 0.4 PID ATM PATHWAY ATM pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS Genes involved in Apoptotic cleavage of cell adhesion proteins
0.0 0.3 REACTOME RETROGRADE NEUROTROPHIN SIGNALLING Genes involved in Retrograde neurotrophin signalling
0.0 0.2 REACTOME VITAMIN B5 PANTOTHENATE METABOLISM Genes involved in Vitamin B5 (pantothenate) metabolism
0.0 0.1 REACTOME ACYL CHAIN REMODELLING OF PG Genes involved in Acyl chain remodelling of PG