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PRJEB1986: zebrafish developmental stages transcriptome

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Results for her6+her9

Z-value: 0.31

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Transcription factors associated with her6+her9

Gene Symbol Gene ID Gene Info
her6
ENSDARG00000006514 hairy-related 6
her9
ENSDARG00000056438 hairy-related 9
her6
ENSDARG00000111099 hairy-related 6
her9
ENSDARG00000115775 hairy-related 9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
her6dr11_v1_chr6_-_36552844_36552844-0.292.2e-01Click!
her9dr11_v1_chr23_-_23401305_23401305-0.282.4e-01Click!

Activity profile of her6+her9 motif

Sorted Z-values of her6+her9 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr19_-_6385594 0.58 ENSDART00000104950
atp1a3a
ATPase Na+/K+ transporting subunit alpha 3a
chr7_+_529522 0.51 ENSDART00000190811
nrxn2b
neurexin 2b
chr5_-_23429228 0.44 ENSDART00000049291
gria3a
glutamate receptor, ionotropic, AMPA 3a
chr23_+_22656477 0.39 ENSDART00000009337
ENSDART00000133322
eno1a
enolase 1a, (alpha)
chr20_+_39283849 0.32 ENSDART00000002481
ENSDART00000146683
scara3
scavenger receptor class A, member 3
chr17_-_3986236 0.31 ENSDART00000188794
ENSDART00000160830
PLCB1
si:ch1073-140o9.2
chr4_+_9669717 0.31 ENSDART00000004604
si:dkey-153k10.9
si:dkey-153k10.9
chr23_+_40452157 0.29 ENSDART00000113106
ENSDART00000140136
soga3b
SOGA family member 3b
chr25_+_19954576 0.28 ENSDART00000149335
kcna1a
potassium voltage-gated channel, shaker-related subfamily, member 1a
chr14_+_15064870 0.28 ENSDART00000167075
nkx1.2lb
NK1 transcription factor related 2-like,b
chr1_+_31942961 0.28 ENSDART00000007522
anos1a
anosmin 1a
chr15_-_12319065 0.28 ENSDART00000162973
ENSDART00000170543
fxyd6
FXYD domain containing ion transport regulator 6
chr14_-_32520295 0.27 ENSDART00000165463
atp11c
ATPase phospholipid transporting 11C
chr14_-_2189889 0.25 ENSDART00000181557
ENSDART00000106707
pcdh2ab9
pcdh2ab11
protocadherin 2 alpha b 9
protocadherin 2 alpha b 11
chr22_-_10502780 0.25 ENSDART00000136961
ecm2
extracellular matrix protein 2, female organ and adipocyte specific
chr24_+_23791758 0.24 ENSDART00000066655
ENSDART00000146580
mybl1
v-myb avian myeloblastosis viral oncogene homolog-like 1
chr23_+_44732863 0.24 ENSDART00000160044
ENSDART00000172268
atp1b2a
ATPase Na+/K+ transporting subunit beta 2a
chr18_-_14274803 0.22 ENSDART00000166643
mlycd
malonyl-CoA decarboxylase
chr20_-_5328637 0.20 ENSDART00000075974
ism2b
isthmin 2b
chr8_-_912821 0.20 ENSDART00000082296
ptger4a
prostaglandin E receptor 4 (subtype EP4) a
chr7_-_6438544 0.19 ENSDART00000173180
zgc:165555
zgc:165555
chr16_+_48729947 0.18 ENSDART00000049051
brd2b
bromodomain containing 2b
chr22_+_19311411 0.18 ENSDART00000133234
ENSDART00000138284
si:dkey-21e2.16
si:dkey-21e2.16
chr8_+_36509885 0.18 ENSDART00000109530
slc7a4
solute carrier family 7, member 4
chr2_+_13069168 0.17 ENSDART00000192832
prkag2b
protein kinase, AMP-activated, gamma 2 non-catalytic subunit b
chr6_-_40195510 0.16 ENSDART00000156156
col7a1
collagen, type VII, alpha 1
chr19_-_15397946 0.15 ENSDART00000143480
hivep3a
human immunodeficiency virus type I enhancer binding protein 3a
chr23_-_6765653 0.14 ENSDART00000192310
FP102169.1

chr3_-_8765165 0.14 ENSDART00000191131
CABZ01058333.1

chr4_+_332709 0.14 ENSDART00000067486
tulp4a
tubby like protein 4a
chr21_-_32680638 0.14 ENSDART00000147203
adamts2
ADAM metallopeptidase with thrombospondin type 1 motif, 2
chr1_-_22756898 0.13 ENSDART00000158915
prom1b
prominin 1 b
chr17_-_20666616 0.13 ENSDART00000020167
slc16a9a
solute carrier family 16, member 9a
chr18_+_41772474 0.12 ENSDART00000097547
trpc6b
transient receptor potential cation channel, subfamily C, member 6b
chr10_+_29138021 0.11 ENSDART00000025227
ENSDART00000123033
ENSDART00000034242
picalma
phosphatidylinositol binding clathrin assembly protein a
chr2_-_58257624 0.11 ENSDART00000098940
foxl2b
forkhead box L2b
chr20_-_8304271 0.11 ENSDART00000179057
dab1a
Dab, reelin signal transducer, homolog 1a (Drosophila)
chr20_-_40766387 0.11 ENSDART00000061173
hsdl1
hydroxysteroid dehydrogenase like 1
chr5_+_1965296 0.10 ENSDART00000156224
dhx33
DEAH (Asp-Glu-Ala-His) box polypeptide 33
chr5_-_12560569 0.10 ENSDART00000133587
wsb2
WD repeat and SOCS box containing 2
chr24_-_33291784 0.10 ENSDART00000124938
si:ch1073-406l10.2
si:ch1073-406l10.2
chr18_-_494606 0.10 ENSDART00000157564
wtip
WT1 interacting protein
chr4_+_68562464 0.10 ENSDART00000192954
BX548011.4

chr9_-_43538328 0.09 ENSDART00000140526
znf385b
zinc finger protein 385B
chr9_-_6624663 0.08 ENSDART00000092537
GPR45
si:dkeyp-118h3.5
chr2_+_68789 0.07 ENSDART00000058569
cldn1
claudin 1
chr25_+_388258 0.07 ENSDART00000166834
rfx7b
regulatory factor X7b
chr7_+_17938128 0.07 ENSDART00000141044
mta2
metastasis associated 1 family, member 2
chr18_+_16125852 0.07 ENSDART00000061106
bhlhe41
basic helix-loop-helix family, member e41
chr5_-_29122615 0.06 ENSDART00000144802
whrnb
whirlin b
chr5_-_29122834 0.06 ENSDART00000087197
whrnb
whirlin b
chr11_-_12800945 0.06 ENSDART00000191178
txlng
taxilin gamma
chr15_+_27387555 0.06 ENSDART00000018603
tbx4
T-box 4
chr11_-_12801157 0.06 ENSDART00000103449
txlng
taxilin gamma
chr14_+_12110020 0.05 ENSDART00000192462
kctd12b
potassium channel tetramerisation domain containing 12b
chr1_+_37196106 0.05 ENSDART00000008756
ENSDART00000157503
ENSDART00000162971
ENSDART00000191004
ENSDART00000078206
ENSDART00000045111
dclk2a
doublecortin-like kinase 2a
chr1_-_38908197 0.04 ENSDART00000101489
vegfc
vascular endothelial growth factor c
chr24_+_39537565 0.04 ENSDART00000140868
ENSDART00000145358
si:dkey-161j23.5
si:dkey-161j23.5
chr14_+_12109535 0.04 ENSDART00000054620
ENSDART00000121913
kctd12b
potassium channel tetramerisation domain containing 12b
chr12_+_19362547 0.03 ENSDART00000180148
gspt1
G1 to S phase transition 1
chr9_+_9112159 0.03 ENSDART00000165932
sik1
salt-inducible kinase 1
chr1_+_37195919 0.03 ENSDART00000159684
ENSDART00000172742
ENSDART00000158395
dclk2a
doublecortin-like kinase 2a
chr12_+_19362335 0.03 ENSDART00000041711
gspt1
G1 to S phase transition 1
chr13_+_35925490 0.02 ENSDART00000046115
mfsd2aa
major facilitator superfamily domain containing 2aa
chr23_-_15088316 0.01 ENSDART00000082060
si:ch211-218g4.2
si:ch211-218g4.2
chr3_+_431208 0.00 ENSDART00000154296
ENSDART00000048733
si:ch73-308m11.1
si:dkey-167k11.5
si:ch73-308m11.1
si:dkey-167k11.5
chr14_-_41075262 0.00 ENSDART00000180518
drp2
dystrophin related protein 2

Network of associatons between targets according to the STRING database.

First level regulatory network of her6+her9

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889)
0.0 0.2 GO:2001293 malonyl-CoA metabolic process(GO:2001293)
0.0 0.8 GO:0071436 cellular potassium ion homeostasis(GO:0030007) sodium ion export from cell(GO:0036376) sodium ion export(GO:0071436)
0.0 0.1 GO:0048496 maintenance of organ identity(GO:0048496)
0.0 0.1 GO:0060148 negative regulation of hippo signaling(GO:0035331) positive regulation of posttranscriptional gene silencing(GO:0060148) positive regulation of gene silencing by miRNA(GO:2000637)
0.0 0.2 GO:1990402 embryonic liver development(GO:1990402)
0.0 0.3 GO:0021772 olfactory bulb development(GO:0021772) olfactory lobe development(GO:0021988)
0.0 0.1 GO:0006972 hyperosmotic response(GO:0006972)
0.0 0.1 GO:0045943 positive regulation of transcription from RNA polymerase I promoter(GO:0045943)
0.0 0.1 GO:0097477 spinal cord motor neuron migration(GO:0097476) lateral motor column neuron migration(GO:0097477)
0.0 0.1 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.0 0.2 GO:0010811 positive regulation of cell-substrate adhesion(GO:0010811)
0.0 0.1 GO:0030326 embryonic limb morphogenesis(GO:0030326)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.0 0.2 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.2 GO:0005890 sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533)
0.0 0.3 GO:0044224 paranode region of axon(GO:0033270) juxtaparanode region of axon(GO:0044224)
0.0 0.1 GO:0071914 prominosome(GO:0071914)
0.0 0.2 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0002139 stereocilia coupling link(GO:0002139) stereocilia ankle link(GO:0002141) stereocilia ankle link complex(GO:0002142) stereocilium tip(GO:0032426)
0.0 0.1 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.1 GO:0098835 presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0070052 collagen V binding(GO:0070052)
0.1 0.6 GO:0005391 sodium:potassium-exchanging ATPase activity(GO:0005391)
0.0 0.4 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.0 0.4 GO:0004971 AMPA glutamate receptor activity(GO:0004971)
0.0 0.0 GO:0043185 vascular endothelial growth factor receptor 3 binding(GO:0043185)
0.0 0.2 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.3 GO:0017080 sodium channel regulator activity(GO:0017080)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID IL8 CXCR1 PATHWAY IL8- and CXCR1-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE Genes involved in Regulation of Insulin Secretion by Acetylcholine