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PRJEB1986: zebrafish developmental stages transcriptome

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Results for glis2a+glis2b

Z-value: 0.57

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Transcription factors associated with glis2a+glis2b

Gene Symbol Gene ID Gene Info
glis2a
ENSDARG00000078388 GLIS family zinc finger 2a
glis2b
ENSDARG00000100232 GLIS family zinc finger 2b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
glis2bdr11_v1_chr3_+_12334509_123345090.888.2e-07Click!
glis2adr11_v1_chr22_-_26558166_265581660.771.3e-04Click!

Activity profile of glis2a+glis2b motif

Sorted Z-values of glis2a+glis2b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_+_51079504 1.60 ENSDART00000097466
fam169aa
family with sequence similarity 169, member Aa
chr20_-_25518488 1.22 ENSDART00000186993
cyp2n13
cytochrome P450, family 2, subfamily N, polypeptide 13
chr13_-_638485 1.11 ENSDART00000066080
ENSDART00000128969
slit1a
slit homolog 1a (Drosophila)
chr2_+_51783120 1.07 ENSDART00000177559
crygn1
crystallin, gamma N1
chr24_-_38574631 0.84 ENSDART00000154539
slc17a7b
solute carrier family 17 (vesicular glutamate transporter), member 7b
chr25_-_997894 0.76 ENSDART00000169011
znf609a
zinc finger protein 609a
chr3_+_34220194 0.74 ENSDART00000145859
slc25a23b
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b
chr16_+_3004422 0.69 ENSDART00000189969
CABZ01043952.1

chr7_+_57725708 0.68 ENSDART00000056466
ENSDART00000142259
ENSDART00000166198
camk2d1
calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1
chr24_+_37723362 0.67 ENSDART00000136836
rab11fip3
RAB11 family interacting protein 3 (class II)
chr6_-_7769178 0.66 ENSDART00000191701
ENSDART00000149823
myh9a
myosin, heavy chain 9a, non-muscle
chr11_+_27968834 0.61 ENSDART00000147984
alpl
alkaline phosphatase, liver/bone/kidney
chr19_-_48336535 0.61 ENSDART00000162752
si:ch73-359m17.6
si:ch73-359m17.6
chr21_+_25643880 0.59 ENSDART00000192392
ENSDART00000145091
tmem151a
transmembrane protein 151A
chr24_-_35707552 0.57 ENSDART00000165199
mapre2
microtubule-associated protein, RP/EB family, member 2
chr20_-_1239596 0.55 ENSDART00000049063
ENSDART00000140650
ankrd6b
ankyrin repeat domain 6b
chr7_+_38509333 0.53 ENSDART00000153482
slc7a9
solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9
chr16_-_26435431 0.50 ENSDART00000187526
megf8
multiple EGF-like-domains 8
chr17_-_4245311 0.49 ENSDART00000055379
gdf3
growth differentiation factor 3
chr5_+_9405283 0.49 ENSDART00000127306
ugt2a7
UDP glucuronosyltransferase 2 family, polypeptide A7
chr23_-_36934944 0.47 ENSDART00000109976
ENSDART00000162179
acap3a
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a
chr22_-_18116635 0.44 ENSDART00000005724
ncanb
neurocan b
chr19_-_36640677 0.43 ENSDART00000189743
csmd2
CUB and Sushi multiple domains 2
chr17_+_23578316 0.38 ENSDART00000149281
slc16a12a
solute carrier family 16, member 12a
chr9_+_20781047 0.37 ENSDART00000139174
fam46c
family with sequence similarity 46, member C
chr23_-_29004753 0.36 ENSDART00000002812
casz1
castor zinc finger 1
chr4_-_17725008 0.36 ENSDART00000016658
chpt1
choline phosphotransferase 1
chr17_-_4245902 0.34 ENSDART00000151851
gdf3
growth differentiation factor 3
chr17_-_3291369 0.33 ENSDART00000181840
CABZ01007222.1

chr12_+_2676878 0.31 ENSDART00000185909
antxr1c
anthrax toxin receptor 1c
chr23_-_29003864 0.31 ENSDART00000148257
casz1
castor zinc finger 1
chr5_-_1047222 0.30 ENSDART00000181112
mbd2
methyl-CpG binding domain protein 2
chr6_+_38845848 0.29 ENSDART00000184907
stk35l
serine/threonine kinase 35, like
chr13_+_39208542 0.27 ENSDART00000147971
fam135a
family with sequence similarity 135, member A
chr24_+_25471196 0.27 ENSDART00000066625
smpx
small muscle protein, X-linked
chr23_+_39481537 0.27 ENSDART00000187222
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr2_+_13722116 0.26 ENSDART00000155015
zbtb41
zinc finger and BTB domain containing 41
chr5_-_22001003 0.22 ENSDART00000134393
ENSDART00000143878
arhgef9a
Cdc42 guanine nucleotide exchange factor (GEF) 9a
chr7_+_11390462 0.22 ENSDART00000114383
tlnrd1
talin rod domain containing 1
chr16_-_45854882 0.21 ENSDART00000027013
ENSDART00000128068
ntrk1
neurotrophic tyrosine kinase, receptor, type 1
chr15_-_97205 0.20 ENSDART00000158734
BACE1
beta-secretase 1
chr19_+_20540843 0.19 ENSDART00000192500
kcnh8
potassium voltage-gated channel, subfamily H (eag-related), member 8
chr21_-_588858 0.18 ENSDART00000168983
TMEM38B
transmembrane protein 38B
chr25_+_16912243 0.18 ENSDART00000186579
zgc:77158
zgc:77158
chr18_+_17151916 0.16 ENSDART00000175488
trhr2
thyrotropin releasing hormone receptor 2
chr2_+_13721888 0.13 ENSDART00000089618
zbtb41
zinc finger and BTB domain containing 41
chr10_-_13116337 0.13 ENSDART00000164568
musk
muscle, skeletal, receptor tyrosine kinase
chr23_-_45705525 0.12 ENSDART00000148959
ednrab
endothelin receptor type Ab
chr17_-_44968177 0.12 ENSDART00000075510
ngb
neuroglobin
chr15_+_518092 0.12 ENSDART00000154594
pcsk7
proprotein convertase subtilisin/kexin type 7
chr13_-_24880525 0.11 ENSDART00000136624
kat6b
K(lysine) acetyltransferase 6B
chr20_+_38285671 0.09 ENSDART00000061432
ccl38a.4
chemokine (C-C motif) ligand 38, duplicate 4
chr3_+_40409100 0.08 ENSDART00000103486
tnrc18
trinucleotide repeat containing 18
chr7_-_19642417 0.08 ENSDART00000160936
si:ch211-212k18.4
si:ch211-212k18.4
chr10_-_1961576 0.06 ENSDART00000042441
tdgf1
teratocarcinoma-derived growth factor 1
chr7_-_24838857 0.05 ENSDART00000179766
ENSDART00000180892
fam113
family with sequence similarity 113
chr5_+_38886499 0.05 ENSDART00000076845
fras1
Fraser extracellular matrix complex subunit 1
chr6_+_38845697 0.04 ENSDART00000053187
stk35l
serine/threonine kinase 35, like
chr17_-_20717845 0.03 ENSDART00000150037
ank3b
ankyrin 3b
chr4_-_59152337 0.03 ENSDART00000156770
znf1149
zinc finger protein 1149
chr3_-_61592417 0.03 ENSDART00000155082
nptx2a
neuronal pentraxin 2a
chr3_-_33113879 0.03 ENSDART00000044677
rarab
retinoic acid receptor, alpha b
chr23_+_42810055 0.01 ENSDART00000186647
myl9a
myosin, light chain 9a, regulatory
chr23_+_43668756 0.00 ENSDART00000112598
otud4
OTU deubiquitinase 4

Network of associatons between targets according to the STRING database.

First level regulatory network of glis2a+glis2b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0038107 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.1 0.7 GO:0061439 renal system vasculature morphogenesis(GO:0061438) kidney vasculature morphogenesis(GO:0061439) glomerulus vasculature morphogenesis(GO:0072103) glomerular capillary formation(GO:0072104)
0.1 0.8 GO:0098700 neurotransmitter loading into synaptic vesicle(GO:0098700)
0.1 0.3 GO:0019417 sulfur oxidation(GO:0019417)
0.1 0.6 GO:1904825 protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825)
0.0 1.1 GO:0045773 positive regulation of axon extension(GO:0045773)
0.0 0.3 GO:1901998 toxin transport(GO:1901998)
0.0 0.2 GO:0002446 neutrophil mediated immunity(GO:0002446)
0.0 1.2 GO:0042737 drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738)
0.0 0.1 GO:0090008 hypoblast development(GO:0090008)
0.0 0.5 GO:0048264 determination of ventral identity(GO:0048264)
0.0 0.1 GO:0003319 cardioblast migration to the midline involved in heart rudiment formation(GO:0003319)
0.0 0.1 GO:0071340 skeletal muscle acetylcholine-gated channel clustering(GO:0071340)
0.0 0.7 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.5 GO:0060972 left/right pattern formation(GO:0060972)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0030877 beta-catenin destruction complex(GO:0030877)
0.1 0.8 GO:0030285 integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563)
0.1 0.3 GO:0043034 costamere(GO:0043034)
0.0 0.6 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.7 GO:0055038 cleavage furrow(GO:0032154) recycling endosome membrane(GO:0055038) cell surface furrow(GO:0097610)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0004035 alkaline phosphatase activity(GO:0004035)
0.1 0.4 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.1 1.1 GO:0048495 Roundabout binding(GO:0048495)
0.1 0.8 GO:0005326 neurotransmitter transporter activity(GO:0005326)
0.0 0.2 GO:0005030 neurotrophin receptor activity(GO:0005030)
0.0 0.7 GO:0031267 small GTPase binding(GO:0031267)
0.0 0.2 GO:0004997 thyrotropin-releasing hormone receptor activity(GO:0004997)
0.0 0.2 GO:0005402 sugar:proton symporter activity(GO:0005351) cation:sugar symporter activity(GO:0005402) sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0 1.2 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712)
0.0 0.1 GO:0004962 endothelin receptor activity(GO:0004962)
0.0 0.1 GO:0098809 nitrite reductase activity(GO:0098809)
0.0 0.6 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.1 GO:0038062 protein tyrosine kinase collagen receptor activity(GO:0038062) collagen receptor activity(GO:0038064)
0.0 0.7 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.0 0.7 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 1.1 GO:0005212 structural constituent of eye lens(GO:0005212)
0.0 0.4 GO:0005540 hyaluronic acid binding(GO:0005540)
0.0 0.5 GO:0008013 beta-catenin binding(GO:0008013)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway
0.0 0.2 SA TRKA RECEPTOR The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME BASIGIN INTERACTIONS Genes involved in Basigin interactions
0.0 0.2 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.0 0.4 REACTOME SYNTHESIS OF PC Genes involved in Synthesis of PC