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PRJEB1986: zebrafish developmental stages transcriptome

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Results for foxg1a+foxg1c+foxg1d

Z-value: 1.28

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Transcription factors associated with foxg1a+foxg1c+foxg1d

Gene Symbol Gene ID Gene Info
foxg1c
ENSDARG00000068380 forkhead box G1c
foxg1d
ENSDARG00000070053 forkhead box G1d
foxg1a
ENSDARG00000070769 forkhead box G1a
foxg1c
ENSDARG00000114414 forkhead box G1c

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
foxg1adr11_v1_chr17_-_29119362_29119362-0.831.2e-05Click!
foxg1ddr11_v1_chr13_+_255067_2550670.464.9e-02Click!
foxg1cdr11_v1_chr18_-_40901707_409017070.272.6e-01Click!

Activity profile of foxg1a+foxg1c+foxg1d motif

Sorted Z-values of foxg1a+foxg1c+foxg1d motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr18_-_38088099 4.97 ENSDART00000146120
luzp2
leucine zipper protein 2
chr18_-_38087875 4.32 ENSDART00000111301
luzp2
leucine zipper protein 2
chr16_-_13613475 4.23 ENSDART00000139102
dbpb
D site albumin promoter binding protein b
chr19_-_8096984 4.21 ENSDART00000146987
si:dkey-266f7.9
si:dkey-266f7.9
chr8_-_51599036 3.87 ENSDART00000175779
ENSDART00000134614
ENSDART00000098263
kctd9a
potassium channel tetramerization domain containing 9a
chr15_-_30816370 3.85 ENSDART00000142982
ENSDART00000050649
ENSDART00000136901
ENSDART00000100194
msi2b
musashi RNA-binding protein 2b
chr25_-_26673570 3.80 ENSDART00000154917
ciartb
circadian associated repressor of transcription b
chr14_+_2095394 3.74 ENSDART00000186847
CT573264.2

chr3_+_23248542 3.72 ENSDART00000185765
ENSDART00000192332
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr14_-_2361692 3.55 ENSDART00000167696
PCDHGC3 (1 of many)
si:ch73-233f7.4
chr8_+_19621511 3.48 ENSDART00000017128
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr18_+_18104235 3.20 ENSDART00000145342
cbln1
cerebellin 1 precursor
chr15_-_19250543 3.03 ENSDART00000092705
ENSDART00000138895
igsf9ba
immunoglobulin superfamily, member 9Ba
chr3_-_15264698 3.01 ENSDART00000111948
ENSDART00000142594
sez6l2
seizure related 6 homolog (mouse)-like 2
chr8_+_19621731 2.96 ENSDART00000144667
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr12_-_17897134 2.92 ENSDART00000066407
nptx2b
neuronal pentraxin IIb
chr22_-_38543630 2.88 ENSDART00000172029
si:ch211-126j24.1
si:ch211-126j24.1
chr4_+_1283068 2.84 ENSDART00000167233
chrm2a
cholinergic receptor, muscarinic 2a
chr23_+_5470967 2.70 ENSDART00000110522
ENSDART00000149050
tulp1a
tubby like protein 1a
chr11_+_13058613 2.61 ENSDART00000161532
zfyve9b
zinc finger, FYVE domain containing 9b
chr12_+_39685485 2.51 ENSDART00000163403
LO017650.1

chr24_+_29381946 2.35 ENSDART00000189551
ntng1a
netrin g1a
chr17_-_15657029 2.27 ENSDART00000153925
fut9a
fucosyltransferase 9a
chr25_-_16742438 2.18 ENSDART00000156091
galnt8a.1
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1
chr4_+_3980247 1.93 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr5_+_9360394 1.88 ENSDART00000124642
FP236810.2

chr24_+_29382109 1.87 ENSDART00000184620
ENSDART00000188414
ENSDART00000186132
ENSDART00000191489
ntng1a
netrin g1a
chr4_+_3287819 1.85 ENSDART00000168633
CABZ01085700.1

chr15_-_30815826 1.76 ENSDART00000156160
ENSDART00000145918
msi2b
musashi RNA-binding protein 2b
chr14_-_30452218 1.76 ENSDART00000011480
zdhhc2
zinc finger, DHHC-type containing 2
chr7_+_47243564 1.62 ENSDART00000098942
ENSDART00000162237
znf507
zinc finger protein 507
chr19_-_22541284 1.52 ENSDART00000019505
pleca
plectin a
chr18_-_5509616 1.51 ENSDART00000142945
bloc1s6
biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
chr17_-_24916889 1.48 ENSDART00000156157
si:ch211-195o20.7
si:ch211-195o20.7
chr15_-_8763106 1.47 ENSDART00000154171
arhgap35a
Rho GTPase activating protein 35a
chr2_+_30721070 1.45 ENSDART00000099052
si:dkey-94e7.2
si:dkey-94e7.2
chr7_+_20656942 1.37 ENSDART00000100898
tnfsf12
TNF superfamily member 12
chr21_+_43669943 1.36 ENSDART00000136025
tmlhe
trimethyllysine hydroxylase, epsilon
chr7_-_51953807 1.30 ENSDART00000174102
ENSDART00000145645
ENSDART00000052054
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr5_+_22791686 1.23 ENSDART00000014806
npas2
neuronal PAS domain protein 2
chr2_+_30721466 1.22 ENSDART00000128982
si:dkey-94e7.2
si:dkey-94e7.2
chr23_+_5977965 1.22 ENSDART00000115403
ENSDART00000183147
NAV1 (1 of many)
neuron navigator 1
chr20_-_14665002 1.21 ENSDART00000152816
scrn2
secernin 2
chr20_+_38032143 1.11 ENSDART00000032161
galnt14
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
chr4_-_8902406 1.11 ENSDART00000192962
mpped1
metallophosphoesterase domain containing 1
chr16_+_41570653 1.07 ENSDART00000102665
aste1a
asteroid homolog 1a
chr1_-_46875493 1.05 ENSDART00000115081
agpat3
1-acylglycerol-3-phosphate O-acyltransferase 3
chr11_-_42554290 1.03 ENSDART00000130573
atp6ap1la
ATPase H+ transporting accessory protein 1 like a
chr25_-_35664817 0.95 ENSDART00000148718
lrrk2
leucine-rich repeat kinase 2
chr5_-_21044693 0.93 ENSDART00000140298
si:dkey-13n15.2
si:dkey-13n15.2
chr7_-_51953613 0.88 ENSDART00000142042
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr14_+_146857 0.83 ENSDART00000122521
CABZ01088229.1

chr1_+_59090583 0.80 ENSDART00000150658
mfap4
microfibril associated protein 4
chr19_-_19025998 0.71 ENSDART00000186156
ENSDART00000163359
ENSDART00000167951
dync1li1
dynein, cytoplasmic 1, light intermediate chain 1
chr24_+_11106402 0.67 ENSDART00000146697
prlh2
prolactin releasing hormone 2
chr12_-_43437927 0.67 ENSDART00000169949
ptprea
protein tyrosine phosphatase, receptor type, E, a
chr19_-_82504 0.63 ENSDART00000027864
ENSDART00000160560
hnrnpr
heterogeneous nuclear ribonucleoprotein R
chr1_+_59090743 0.63 ENSDART00000100199
mfap4
microfibril associated protein 4
chr24_-_6038025 0.56 ENSDART00000077819
ENSDART00000139216
ftr61
finTRIM family, member 61
chr3_+_41726360 0.54 ENSDART00000154401
chst12a
carbohydrate (chondroitin 4) sulfotransferase 12a
chr9_+_2002701 0.52 ENSDART00000082329
evx2
even-skipped homeobox 2
chr7_+_9189547 0.51 ENSDART00000169783
pcsk6
proprotein convertase subtilisin/kexin type 6
chr16_-_18702249 0.48 ENSDART00000191595
fhod3b
formin homology 2 domain containing 3b
chr14_+_12316581 0.48 ENSDART00000170115
ENSDART00000149757
si:ch211-125c23.3
cx31.7
si:ch211-125c23.3
connexin 31.7
chr8_-_27656765 0.47 ENSDART00000078491
mov10b.2
Moloney leukemia virus 10b, tandem duplicate 2
chr25_+_21267579 0.44 ENSDART00000152015
fgl2b
fibrinogen-like 2b
chr7_+_35268880 0.42 ENSDART00000182231
dpep2
dipeptidase 2
chr18_+_5510251 0.40 ENSDART00000007797
slc30a4
solute carrier family 30 (zinc transporter), member 4
chr5_+_60934534 0.40 ENSDART00000065025
rph3al
rabphilin 3A-like (without C2 domains)
chr17_-_4252221 0.39 ENSDART00000152020
gdf3
growth differentiation factor 3
chr11_+_583725 0.39 ENSDART00000189415
mkrn2os.2
MKRN2 opposite strand, tandem duplicate 2
chr6_+_11829867 0.39 ENSDART00000151044
baz2ba
bromodomain adjacent to zinc finger domain, 2Ba
chr19_-_30904590 0.37 ENSDART00000137633
si:ch211-194e15.5
si:ch211-194e15.5
chr20_-_54564018 0.36 ENSDART00000099832
zgc:153012
zgc:153012
chr5_-_6508250 0.29 ENSDART00000060535
crybb3
crystallin, beta B3
chr1_-_50710468 0.22 ENSDART00000080389
fam13a
family with sequence similarity 13, member A
chr3_+_23248704 0.18 ENSDART00000156032
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr11_-_42739148 0.06 ENSDART00000183584
CU459094.2

chr8_+_25616946 0.04 ENSDART00000133983
slc38a5a
solute carrier family 38, member 5a
chr2_-_30721502 0.02 ENSDART00000132389
si:dkey-94e7.1
si:dkey-94e7.1
chr6_+_36942966 0.01 ENSDART00000028895
negr1
neuronal growth regulator 1

Network of associatons between targets according to the STRING database.

First level regulatory network of foxg1a+foxg1c+foxg1d

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.8 GO:0003161 cardiac conduction system development(GO:0003161) negative regulation of heart rate(GO:0010459)
0.4 6.4 GO:0015781 pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.4 5.6 GO:0021772 olfactory bulb development(GO:0021772) olfactory lobe development(GO:0021988)
0.2 0.9 GO:0060159 regulation of dopamine receptor signaling pathway(GO:0060159)
0.2 1.4 GO:0045329 carnitine biosynthetic process(GO:0045329)
0.2 4.2 GO:0070831 basement membrane assembly(GO:0070831)
0.1 1.8 GO:0016188 synaptic vesicle maturation(GO:0016188)
0.1 2.3 GO:0036065 fucosylation(GO:0036065)
0.1 0.7 GO:0045448 regulation of mitotic cell cycle, embryonic(GO:0009794) mitotic cell cycle, embryonic(GO:0045448)
0.1 2.9 GO:0048168 regulation of neuronal synaptic plasticity(GO:0048168)
0.1 5.0 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.1 0.5 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.1 1.4 GO:0001867 complement activation, lectin pathway(GO:0001867)
0.1 0.4 GO:0032119 sequestering of zinc ion(GO:0032119) regulation of sequestering of zinc ion(GO:0061088)
0.1 1.5 GO:0031581 hemidesmosome assembly(GO:0031581)
0.1 0.4 GO:0038107 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.1 0.9 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)
0.1 2.7 GO:0061512 protein localization to cilium(GO:0061512)
0.0 0.5 GO:0060573 ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573)
0.0 2.2 GO:0017144 drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738)
0.0 3.9 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 0.5 GO:0016486 peptide hormone processing(GO:0016486)
0.0 3.9 GO:0051260 protein homooligomerization(GO:0051260)
0.0 1.9 GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway(GO:0007193)
0.0 0.5 GO:0051639 actin filament network formation(GO:0051639)
0.0 1.0 GO:0030641 regulation of cellular pH(GO:0030641)
0.0 2.3 GO:1990778 protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778)
0.0 2.6 GO:0001889 liver development(GO:0001889)
0.0 0.0 GO:1902024 L-histidine transmembrane transport(GO:0089709) L-histidine transport(GO:1902024)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.8 GO:0098837 postsynaptic recycling endosome(GO:0098837)
0.2 1.2 GO:1990513 CLOCK-BMAL transcription complex(GO:1990513)
0.2 4.2 GO:0005605 basal lamina(GO:0005605) laminin complex(GO:0043256)
0.2 5.6 GO:0005844 polysome(GO:0005844)
0.2 1.0 GO:0033181 plasma membrane proton-transporting V-type ATPase complex(GO:0033181)
0.1 1.5 GO:0030056 hemidesmosome(GO:0030056)
0.1 6.4 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.1 1.5 GO:0031083 BLOC-1 complex(GO:0031083)
0.1 1.9 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.1 0.7 GO:0005868 cytoplasmic dynein complex(GO:0005868)
0.0 2.3 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.0 1.5 GO:0031941 filamentous actin(GO:0031941)
0.0 3.9 GO:0014069 postsynaptic density(GO:0014069)
0.0 1.6 GO:0000786 nucleosome(GO:0000786)
0.0 0.5 GO:0043186 P granule(GO:0043186)
0.0 2.8 GO:0045211 postsynaptic membrane(GO:0045211)
0.0 3.5 GO:0000139 Golgi membrane(GO:0000139)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 6.4 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.6 1.9 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.3 2.8 GO:0016907 G-protein coupled acetylcholine receptor activity(GO:0016907)
0.2 1.2 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.2 2.3 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.2 0.5 GO:0032574 5'-3' RNA helicase activity(GO:0032574)
0.1 4.2 GO:0098632 protein binding involved in cell-cell adhesion(GO:0098632)
0.1 3.9 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 1.5 GO:0030506 ankyrin binding(GO:0030506)
0.1 1.4 GO:0048018 receptor activator activity(GO:0030546) receptor agonist activity(GO:0048018)
0.1 0.4 GO:0070573 metallodipeptidase activity(GO:0070573)
0.1 1.0 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841)
0.1 2.9 GO:0044325 ion channel binding(GO:0044325)
0.0 1.4 GO:0003823 antigen binding(GO:0003823)
0.0 1.8 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.7 GO:0045504 dynein heavy chain binding(GO:0045504)
0.0 2.2 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712)
0.0 0.9 GO:0051018 protein kinase A binding(GO:0051018)
0.0 4.2 GO:0008081 phosphoric diester hydrolase activity(GO:0008081)
0.0 1.4 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.4 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.2 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 5.0 NABA SECRETED FACTORS Genes encoding secreted soluble factors

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.2 REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA Genes involved in Circadian Repression of Expression by REV-ERBA
0.1 0.5 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL
0.0 1.0 REACTOME SYNTHESIS OF PA Genes involved in Synthesis of PA
0.0 1.1 REACTOME O LINKED GLYCOSYLATION OF MUCINS Genes involved in O-linked glycosylation of mucins
0.0 1.4 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives