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PRJEB1986: zebrafish developmental stages transcriptome

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Results for egr3

Z-value: 0.33

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Transcription factors associated with egr3

Gene Symbol Gene ID Gene Info
egr3
ENSDARG00000089156 early growth response 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
egr3dr11_v1_chr8_+_50727220_507272200.625.0e-03Click!

Activity profile of egr3 motif

Sorted Z-values of egr3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_56422311 1.07 ENSDART00000171958
gpr39
G protein-coupled receptor 39
chr25_-_207214 1.06 ENSDART00000193448
FP236318.3

chr1_-_7917062 0.86 ENSDART00000177068
mmd2b
monocyte to macrophage differentiation-associated 2b
chr14_-_2933185 0.86 ENSDART00000161677
ENSDART00000162446
ENSDART00000109378
si:dkey-201i24.6
si:dkey-201i24.6
chr13_-_49666615 0.72 ENSDART00000148083
tomm20a
translocase of outer mitochondrial membrane 20
chr3_-_11624694 0.72 ENSDART00000127157
hlfa
hepatic leukemia factor a
chr6_+_2271559 0.71 ENSDART00000165223
pbx1b
pre-B-cell leukemia homeobox 1b
chr13_-_31166544 0.69 ENSDART00000146250
ENSDART00000132129
ENSDART00000139591
mapk8a
mitogen-activated protein kinase 8a
chr9_-_33725972 0.68 ENSDART00000028225
mao
monoamine oxidase
chr9_-_30363770 0.66 ENSDART00000147030
sytl5
synaptotagmin-like 5
chr3_-_49504023 0.61 ENSDART00000168108
prkacaa
protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a
chr19_-_9829965 0.53 ENSDART00000136842
ENSDART00000142766
cacng8a
calcium channel, voltage-dependent, gamma subunit 8a
chr21_+_28958471 0.52 ENSDART00000144331
ENSDART00000005929
ppp3ca
protein phosphatase 3, catalytic subunit, alpha isozyme
chr18_+_3004572 0.51 ENSDART00000190328
CABZ01002690.1

chr15_+_9294620 0.50 ENSDART00000133588
ENSDART00000140009
slc37a4a
solute carrier family 37 (glucose-6-phosphate transporter), member 4a
chr9_+_56422517 0.47 ENSDART00000168620
gpr39
G protein-coupled receptor 39
chr19_+_5480327 0.46 ENSDART00000148794
jupb
junction plakoglobin b
chr2_+_38924975 0.45 ENSDART00000109219
rem2
RAS (RAD and GEM)-like GTP binding 2
chr14_-_7888748 0.43 ENSDART00000166293
ppp3cb
protein phosphatase 3, catalytic subunit, beta isozyme
chr5_+_6617401 0.41 ENSDART00000060532
zgc:110796
zgc:110796
chr5_-_46273938 0.40 ENSDART00000080033
si:ch211-130m23.3
si:ch211-130m23.3
chr7_+_67325933 0.39 ENSDART00000170575
ENSDART00000183342
nfat5b
nuclear factor of activated T cells 5b
chr19_-_617246 0.39 ENSDART00000062551
cyp51
cytochrome P450, family 51
chr21_-_43398122 0.38 ENSDART00000050533
ccni2
cyclin I family, member 2
chr21_-_24865454 0.37 ENSDART00000142907
igsf9bb
immunoglobulin superfamily, member 9Bb
chr8_+_6576940 0.34 ENSDART00000138135
vsig8b
V-set and immunoglobulin domain containing 8b
chr17_+_46387086 0.33 ENSDART00000157079
si:dkey-206p8.1
si:dkey-206p8.1
chr25_+_30298377 0.33 ENSDART00000153622
C11orf96
chromosome 11 open reading frame 96
chr5_-_21030934 0.33 ENSDART00000133461
ENSDART00000098667
camk2b1
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1
chr1_-_48922273 0.31 ENSDART00000150254
si:ch211-112b1.2
si:ch211-112b1.2
chr23_-_29556844 0.29 ENSDART00000138021
rbp7a
retinol binding protein 7a, cellular
chr12_+_35650321 0.26 ENSDART00000190446
BX255898.1

chr16_+_10918252 0.26 ENSDART00000172949
pou2f2a
POU class 2 homeobox 2a
chr21_-_24865217 0.24 ENSDART00000101136
igsf9bb
immunoglobulin superfamily, member 9Bb
chr14_-_21218891 0.23 ENSDART00000158294
ppp2r2cb
protein phosphatase 2, regulatory subunit B, gamma b
chr21_-_43398457 0.23 ENSDART00000166530
ccni2
cyclin I family, member 2
chr3_-_5228137 0.22 ENSDART00000137105
myh9b
myosin, heavy chain 9b, non-muscle
chr24_-_39354829 0.22 ENSDART00000169108
kcnj12a
potassium inwardly-rectifying channel, subfamily J, member 12a
chr17_+_48164536 0.22 ENSDART00000161750
ENSDART00000156923
plekhd1
pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr18_-_19103929 0.21 ENSDART00000188370
ENSDART00000177621
dennd4a
DENN/MADD domain containing 4A
chr22_-_16275236 0.20 ENSDART00000149051
cdc14ab
cell division cycle 14Ab
chr10_-_15919839 0.20 ENSDART00000065032
pip5k1ba
phosphatidylinositol-4-phosphate 5-kinase, type I, beta a
chr10_-_26512742 0.20 ENSDART00000135951
si:dkey-5g14.1
si:dkey-5g14.1
chr10_-_26512993 0.18 ENSDART00000188549
ENSDART00000193316
si:dkey-5g14.1
si:dkey-5g14.1
chr22_+_34784075 0.17 ENSDART00000167538
lcor
ligand dependent nuclear receptor corepressor
chr7_-_46019756 0.14 ENSDART00000162583
zgc:162297
zgc:162297
chr12_-_26537145 0.14 ENSDART00000138437
ENSDART00000163931
ENSDART00000132737
acsf2
acyl-CoA synthetase family member 2
chr7_-_6364168 0.14 ENSDART00000173332
zgc:112234
zgc:112234
chr23_+_804119 0.13 ENSDART00000148163
frmd4bb
FERM domain containing 4Bb
chr24_+_3328354 0.13 ENSDART00000147468
bdh1
3-hydroxybutyrate dehydrogenase, type 1
chr12_-_44016898 0.13 ENSDART00000175304
si:dkey-201i2.4
si:dkey-201i2.4
chr25_+_1304173 0.12 ENSDART00000155229
rxfp3.3b
relaxin/insulin-like family peptide receptor 3.3b
chr16_-_54405976 0.11 ENSDART00000055395
osr2
odd-skipped related transciption factor 2
chr20_+_27298783 0.11 ENSDART00000013861
ppp4r4
protein phosphatase 4, regulatory subunit 4
chr13_+_12739283 0.10 ENSDART00000102279
lingo2b
leucine rich repeat and Ig domain containing 2b
chr6_-_53391727 0.10 ENSDART00000155483
si:ch211-161c3.6
si:ch211-161c3.6
chr12_+_5215795 0.09 ENSDART00000170270
SLC35G1
si:ch211-197g18.2
chr22_+_9806867 0.08 ENSDART00000137182
ENSDART00000106103
si:ch211-236g6.1
si:ch211-236g6.1
chr2_+_59015878 0.08 ENSDART00000148816
ENSDART00000122795
si:ch1073-391i24.1
si:ch1073-391i24.1
chr9_-_48036 0.08 ENSDART00000165230
ENSDART00000171335
map4k4
mitogen-activated protein kinase kinase kinase kinase 4
chr16_+_4138331 0.04 ENSDART00000192403
ENSDART00000193036
mtf1
metal-regulatory transcription factor 1
chr15_-_16121496 0.04 ENSDART00000128624
sgk494a
uncharacterized serine/threonine-protein kinase SgK494a
chr4_-_73587205 0.02 ENSDART00000150837
znf1015
zinc finger protein 1015
chr3_+_24537023 0.02 ENSDART00000077702
sp100.1
SP110 nuclear body protein, tandem duplicate 1
chr16_-_47381519 0.01 ENSDART00000032188
ENSDART00000150136
si:dkey-256h2.1
si:dkey-256h2.1

Network of associatons between targets according to the STRING database.

First level regulatory network of egr3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0042998 positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004)
0.1 0.5 GO:0002159 desmosome assembly(GO:0002159)
0.1 1.3 GO:0033173 calcineurin-NFAT signaling cascade(GO:0033173)
0.1 0.7 GO:0042135 neurotransmitter catabolic process(GO:0042135)
0.1 0.6 GO:0071322 cellular response to carbohydrate stimulus(GO:0071322) cellular response to monosaccharide stimulus(GO:0071326) cellular response to hexose stimulus(GO:0071331) cellular response to glucose stimulus(GO:0071333)
0.0 0.3 GO:0045053 protein retention in Golgi apparatus(GO:0045053)
0.0 0.2 GO:0070650 actin filament bundle distribution(GO:0070650)
0.0 0.5 GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943)
0.0 0.9 GO:0019835 cytolysis(GO:0019835)
0.0 0.2 GO:0070262 peptidyl-serine dephosphorylation(GO:0070262)
0.0 0.2 GO:0071850 mitotic cell cycle arrest(GO:0071850)
0.0 0.4 GO:0071542 dopaminergic neuron differentiation(GO:0071542)
0.0 0.1 GO:0032515 negative regulation of phosphoprotein phosphatase activity(GO:0032515)
0.0 0.2 GO:0032483 regulation of Rab protein signal transduction(GO:0032483)
0.0 0.4 GO:1902653 cholesterol biosynthetic process(GO:0006695) secondary alcohol biosynthetic process(GO:1902653)
0.0 0.0 GO:0071276 cellular response to cadmium ion(GO:0071276)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0005955 calcineurin complex(GO:0005955)
0.1 0.7 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.1 0.6 GO:0001669 acrosomal vesicle(GO:0001669)
0.0 0.2 GO:1902636 kinociliary basal body(GO:1902636)
0.0 0.5 GO:0030057 desmosome(GO:0030057)
0.0 0.5 GO:0032281 AMPA glutamate receptor complex(GO:0032281)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0033192 calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192)
0.1 0.7 GO:0008131 primary amine oxidase activity(GO:0008131)
0.1 0.6 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.1 0.3 GO:0071253 connexin binding(GO:0071253)
0.1 0.7 GO:0004705 JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)
0.1 0.5 GO:0045294 alpha-catenin binding(GO:0045294)
0.0 0.1 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956) butyrate-CoA ligase activity(GO:0047760)
0.0 0.7 GO:0042043 neurexin family protein binding(GO:0042043)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 PID TCR CALCIUM PATHWAY Calcium signaling in the CD4+ TCR pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 REACTOME DARPP 32 EVENTS Genes involved in DARPP-32 events