PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
dlx5a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000042296	distal-less homeobox 5a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dlx5a	dr11_v1_chr19_-_41472228_41472228	-0.21	3.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_+_306036 Show fit	0.46	ENSDART00000103659	msgn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mesogenin 1
chr20_+_35484070 Show fit	0.42	ENSDART00000026234 ENSDART00000141675	mep1a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr20_-_47188966 Show fit	0.40	ENSDART00000152965	si:dkeyp-104f11.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-104f11.9
chr2_-_17694504 Show fit	0.30	ENSDART00000133709	ptprfb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, f, b
chr19_+_712127 Show fit	0.24	ENSDART00000093281 ENSDART00000180002 ENSDART00000146050	fhod3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	formin homology 2 domain containing 3a
chr8_-_50888806 Show fit	0.22	ENSDART00000053750	acsl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	acyl-CoA synthetase long chain family member 2
chr16_+_28994709 Show fit	0.20	ENSDART00000088023	gon4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gon-4-like (C. elegans)
chr2_-_21819421 Show fit	0.19	ENSDART00000121586	chd7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 7
chr20_-_8094718 Show fit	0.17	ENSDART00000122902	si:ch211-232i5.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-232i5.3
chr7_-_25895189 Show fit	0.17	ENSDART00000173599 ENSDART00000079235 ENSDART00000173786 ENSDART00000173602 ENSDART00000079245 ENSDART00000187568 ENSDART00000173505	cd99l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD99 molecule-like 2
chr4_-_49582108 Show fit	0.16	ENSDART00000154999	si:dkey-159n16.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-159n16.2
chr9_+_13229585 Show fit	0.16	ENSDART00000154879 ENSDART00000141705	carf Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium responsive transcription factor
chr24_-_39637418 Show fit	0.15	ENSDART00000142522	fam234a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 234, member A
chr18_+_50461981 Show fit	0.15	ENSDART00000158761	CU896640.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr6_-_43283122 Show fit	0.14	ENSDART00000186022	frmd4ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FERM domain containing 4Ba
chr24_+_7336411 Show fit	0.13	ENSDART00000191170	kmt2ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific methyltransferase 2Ca
chr7_+_69019851 Show fit	0.13	ENSDART00000162891	CABZ01057488.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_75681004 Show fit	0.13	ENSDART00000186296	si:dkey-71l4.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-71l4.5
chr25_-_34632050 Show fit	0.13	ENSDART00000170671	megf8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	multiple EGF-like-domains 8
chr11_+_31864921 Show fit	0.13	ENSDART00000180252	diaph3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	diaphanous-related formin 3
chr23_-_24394719 Show fit	0.13	ENSDART00000044918	epha2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eph receptor A2 b
chr4_-_71152937 Show fit	0.11	ENSDART00000191017	si:dkey-193i10.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-193i10.4
chr23_-_31913231 Show fit	0.11	ENSDART00000146852 ENSDART00000085054	mtfr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial fission regulator 2
chr21_+_39948300 Show fit	0.11	ENSDART00000137740	slc47a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 47 (multidrug and toxin extrusion), member 1
chr2_-_2451181 Show fit	0.11	ENSDART00000101033	pth1ra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	parathyroid hormone 1 receptor a
chr16_+_35661771 Show fit	0.11	ENSDART00000161393	map7d1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP7 domain containing 1a
chr19_+_19512515 Show fit	0.10	ENSDART00000180065	jazf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	JAZF zinc finger 1a
chr6_+_3680651 Show fit	0.10	ENSDART00000013588	klhl41b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch-like family member 41b
chr6_-_40922971 Show fit	0.10	ENSDART00000155363	sfi1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SFI1 centrin binding protein
chr3_+_32832538 Show fit	0.10	ENSDART00000139410	cd2bp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD2 (cytoplasmic tail) binding protein 2
chr23_-_31913069 Show fit	0.10	ENSDART00000135526	mtfr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial fission regulator 2
chr15_+_9053059 Show fit	0.10	ENSDART00000012039	ppm1na Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative)
chr19_+_5480327 Show fit	0.10	ENSDART00000148794	jupb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	junction plakoglobin b
chr23_+_40460333 Show fit	0.10	ENSDART00000184658	soga3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SOGA family member 3b
chr20_-_2949028 Show fit	0.10	ENSDART00000104667 ENSDART00000193151 ENSDART00000131946	cdk19 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin-dependent kinase 19
chr8_-_537716 Show fit	0.09	ENSDART00000051777	zgc:101664 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:101664
chr19_-_205104 Show fit	0.09	ENSDART00000011890	zbtb22a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 22a
chr19_+_15521997 Show fit	0.09	ENSDART00000003164	ppp1r8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 1, regulatory subunit 8a
chr1_-_53277413 Show fit	0.09	ENSDART00000150579	znf330 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 330
chr11_+_23760470 Show fit	0.09	ENSDART00000175688 ENSDART00000121874 ENSDART00000086720	nfasca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurofascin homolog (chicken) a
chr3_+_26019426 Show fit	0.09	ENSDART00000135389 ENSDART00000182411	foxred2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FAD-dependent oxidoreductase domain containing 2
chr23_+_31912882 Show fit	0.08	ENSDART00000140505	armc1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	armadillo repeat containing 1, like
chr16_+_35661331 Show fit	0.08	ENSDART00000161725	map7d1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP7 domain containing 1a
chr17_+_49500820 Show fit	0.08	ENSDART00000170306	AREL1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr17_+_41343167 Show fit	0.08	ENSDART00000156405	mocs1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	molybdenum cofactor synthesis 1
chr5_+_66433287 Show fit	0.07	ENSDART00000170757	kntc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinetochore associated 1
chr6_+_23026714 Show fit	0.07	ENSDART00000124948	srp68 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	signal recognition particle 68
chr2_+_6253246 Show fit	0.07	ENSDART00000058256 ENSDART00000076700	zp3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3b
chr10_-_40968095 Show fit	0.07	ENSDART00000184104	npffr1l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide FF receptor 1 like 1
chr16_-_35329803 Show fit	0.07	ENSDART00000161729 ENSDART00000157700 ENSDART00000184584 ENSDART00000174713 ENSDART00000162518	ptprub Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, U, b
chr4_-_63848305 Show fit	0.07	ENSDART00000097308	BX901974.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_-_13989643 Show fit	0.06	ENSDART00000191046	elf2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	E74-like factor 2b (ets domain transcription factor)
chr25_-_7705487 Show fit	0.06	ENSDART00000128099	prdm11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PR domain containing 11
chr20_-_3004126 Show fit	0.06	ENSDART00000064390	ppil4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peptidylprolyl isomerase (cyclophilin)-like 4
chr17_+_43867889 Show fit	0.05	ENSDART00000132673 ENSDART00000167214	zgc:66313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66313
chr7_-_51368681 Show fit	0.05	ENSDART00000146385	arhgap36 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 36
chr23_+_33963619 Show fit	0.05	ENSDART00000140666 ENSDART00000084792	plpbp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pyridoxal phosphate binding protein
chr17_+_43863708 Show fit	0.05	ENSDART00000133874 ENSDART00000140316 ENSDART00000142929 ENSDART00000148090	zgc:66313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66313
chr4_-_68868700 Show fit	0.05	ENSDART00000187985	si:dkey-264f17.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-264f17.5
chr7_-_69647988 Show fit	0.05	ENSDART00000169943	LO018231.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_5795309 Show fit	0.05	ENSDART00000039987	pgm3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphoglucomutase 3
chr6_-_6487876 Show fit	0.05	ENSDART00000137642	cep170ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 170Ab
chr10_+_19596214 Show fit	0.05	ENSDART00000183110	CABZ01059626.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr15_+_5360407 Show fit	0.04	ENSDART00000110420	or112-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family A, subfamily 112, member 1
chr14_+_11290828 Show fit	0.04	ENSDART00000184078	rlim Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein, LIM domain interacting
chr16_+_45424907 Show fit	0.04	ENSDART00000134471	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr23_+_34990693 Show fit	0.04	ENSDART00000013449	CHST13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-236h17.3
chr18_+_28106139 Show fit	0.04	ENSDART00000089615	kiaa1549lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KIAA1549-like b
chr4_-_11577253 Show fit	0.04	ENSDART00000144452	net1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuroepithelial cell transforming 1
chr16_+_45425181 Show fit	0.03	ENSDART00000168591	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr10_-_1788376 Show fit	0.03	ENSDART00000123842	epb41l4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	erythrocyte membrane protein band 4.1 like 4A
chr1_+_40199074 Show fit	0.03	ENSDART00000179679 ENSDART00000136849	si:ch211-113e8.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-113e8.5
chr8_-_39822917 Show fit	0.03	ENSDART00000067843	zgc:162025 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162025
chr4_+_70712807 Show fit	0.02	ENSDART00000164954	si:ch211-134c10.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-134c10.1
chr16_+_42471455 Show fit	0.02	ENSDART00000166640	si:ch211-215k15.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-215k15.5
chr3_-_23512285 Show fit	0.02	ENSDART00000159151	BX682558.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_-_43863700 Show fit	0.02	ENSDART00000157530	ahsa1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AHA1, activator of heat shock protein ATPase homolog 1b
chr24_-_31843173 Show fit	0.02	ENSDART00000185782	steap2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	STEAP family member 2, metalloreductase
chr4_+_9400012 Show fit	0.02	ENSDART00000191960	tmtc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane and tetratricopeptide repeat containing 1
chr4_-_76184243 Show fit	0.02	ENSDART00000180937	si:ch211-106j21.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-106j21.4
chr16_-_42056137 Show fit	0.01	ENSDART00000102798	zp3d.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3d tandem duplicate 2
chr22_-_6988102 Show fit	0.01	ENSDART00000185618	fgfr1bl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor receptor 1b, like
chr8_-_27656765 Show fit	0.01	ENSDART00000078491	mov10b.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Moloney leukemia virus 10b, tandem duplicate 2
chr19_-_27336092 Show fit	0.01	ENSDART00000176885	gtf2h4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	general transcription factor IIH, polypeptide 4
chr7_-_40110140 Show fit	0.01	ENSDART00000173469	si:ch73-174h16.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-174h16.5

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.5	GO:0048340	paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341)
0.1	0.2	GO:0061400	positive regulation of transcription from RNA polymerase II promoter in response to calcium ion(GO:0061400)
0.0	0.3	GO:0097374	sensory neuron axon guidance(GO:0097374)
0.0	0.1	GO:0045830	regulation of isotype switching(GO:0045191) positive regulation of isotype switching(GO:0045830)
0.0	0.1	GO:0002159	desmosome assembly(GO:0002159)
0.0	0.1	GO:1901407	regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901407)
0.0	0.2	GO:0048798	rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.0	0.2	GO:0051639	actin filament network formation(GO:0051639)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019008	molybdopterin synthase complex(GO:0019008)
0.0	0.1	GO:0005786	signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0047676	arachidonate-CoA ligase activity(GO:0047676)
0.0	0.1	GO:0030942	endoplasmic reticulum signal peptide binding(GO:0030942)
0.0	0.1	GO:0045294	alpha-catenin binding(GO:0045294)
0.0	0.1	GO:0004865	protein serine/threonine phosphatase inhibitor activity(GO:0004865)