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PRJEB1986: zebrafish developmental stages transcriptome
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Results for cxxc1a+cxxc1b+mbd1a
Z-value: 0.13
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Transcription factors associated with cxxc1a+cxxc1b+mbd1a
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
cxxc1b
|
ENSDARG00000025718 | CXXC finger protein 1b |
|
mbd1a
|
ENSDARG00000101205 | methyl-CpG binding domain protein 1a |
|
cxxc1a
|
ENSDARG00000101996 | CXXC finger protein 1a |
|
cxxc1b
|
ENSDARG00000111907 | CXXC finger protein 1b |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| cxxc1a | dr11_v1_chr8_+_7854130_7854130 | 0.77 | 1.2e-04 | Click! |
| cxxc1b | dr11_v1_chr11_+_25539698_25539698 | 0.65 | 2.6e-03 | Click! |
| mbd1a | dr11_v1_chr8_+_7875110_7875142 | -0.10 | 6.9e-01 | Click! |
Activity profile of cxxc1a+cxxc1b+mbd1a motif
Sorted Z-values of cxxc1a+cxxc1b+mbd1a motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr11_+_44579865 | 0.16 |
ENSDART00000173425
|
nid1b
|
nidogen 1b |
| chr11_-_438294 | 0.12 |
ENSDART00000040812
|
nuf2
|
NUF2, NDC80 kinetochore complex component, homolog |
| chr5_+_23136544 | 0.11 |
ENSDART00000003428
ENSDART00000109340 ENSDART00000171039 ENSDART00000178821 |
prps1a
|
phosphoribosyl pyrophosphate synthetase 1A |
| chr1_-_55166511 | 0.10 |
ENSDART00000150430
ENSDART00000035725 |
pane1
|
proliferation associated nuclear element |
| chr21_-_28901095 | 0.08 |
ENSDART00000180820
|
cxxc5a
|
CXXC finger protein 5a |
| chr3_-_19200571 | 0.08 |
ENSDART00000131503
ENSDART00000012335 |
rfx1a
|
regulatory factor X, 1a (influences HLA class II expression) |
| chr11_-_438492 | 0.07 |
ENSDART00000137121
ENSDART00000133784 |
nuf2
|
NUF2, NDC80 kinetochore complex component, homolog |
| chr21_-_7781555 | 0.07 |
ENSDART00000084380
ENSDART00000189131 |
aggf1
|
angiogenic factor with G patch and FHA domains 1 |
| chr22_-_6988102 | 0.07 |
ENSDART00000185618
|
fgfr1bl
|
fibroblast growth factor receptor 1b, like |
| chr14_-_48786708 | 0.06 |
ENSDART00000169730
|
si:ch211-199b20.3
|
si:ch211-199b20.3 |
| chr21_+_29179887 | 0.05 |
ENSDART00000161941
|
si:ch211-57b15.1
|
si:ch211-57b15.1 |
| chr23_-_20345473 | 0.04 |
ENSDART00000140935
|
si:rp71-17i16.6
|
si:rp71-17i16.6 |
| chr21_-_23746916 | 0.02 |
ENSDART00000017229
|
ncam1a
|
neural cell adhesion molecule 1a |
| chr17_+_26803470 | 0.01 |
ENSDART00000023470
|
pgrmc2
|
progesterone receptor membrane component 2 |
| chr21_+_2721752 | 0.00 |
ENSDART00000174953
|
CABZ01073424.1
|
|
| chr24_+_35183595 | 0.00 |
ENSDART00000075142
|
pcmtd1
|
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of cxxc1a+cxxc1b+mbd1a
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0006015 | 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391) |
| 0.0 | 0.2 | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore(GO:0051315) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0031262 | Ndc80 complex(GO:0031262) |
| 0.0 | 0.1 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0004749 | ribose phosphate diphosphokinase activity(GO:0004749) |
| 0.0 | 0.1 | GO:0032184 | SUMO polymer binding(GO:0032184) |