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PRJEB1986: zebrafish developmental stages transcriptome

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Results for creb3l1

Z-value: 0.42

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Transcription factors associated with creb3l1

Gene Symbol Gene ID Gene Info
creb3l1
ENSDARG00000015793 cAMP responsive element binding protein 3-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
creb3l1dr11_v1_chr7_+_38897836_388978360.436.9e-02Click!

Activity profile of creb3l1 motif

Sorted Z-values of creb3l1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_+_32924669 0.75 ENSDART00000085219
lmo4a
LIM domain only 4a
chr1_-_7930679 0.67 ENSDART00000146090
si:dkey-79f11.10
si:dkey-79f11.10
chr12_-_17479078 0.64 ENSDART00000079115
papss2b
3'-phosphoadenosine 5'-phosphosulfate synthase 2b
chr18_-_34549721 0.64 ENSDART00000137101
ENSDART00000021880
ssr3
signal sequence receptor, gamma
chr3_-_26184018 0.59 ENSDART00000191604
si:ch211-11k18.4
si:ch211-11k18.4
chr14_-_26411918 0.55 ENSDART00000020582
tmed9
transmembrane p24 trafficking protein 9
chr4_+_2637947 0.54 ENSDART00000130623
dus4l
dihydrouridine synthase 4-like (S. cerevisiae)
chr6_+_13506841 0.53 ENSDART00000032331
gmppab
GDP-mannose pyrophosphorylase Ab
chr4_+_13568469 0.52 ENSDART00000171235
ENSDART00000136152
calua
calumenin a
chr6_-_9236309 0.50 ENSDART00000160397
ENSDART00000164603
iqcb1
IQ motif containing B1
chr15_+_23784842 0.49 ENSDART00000192889
ENSDART00000138375
ift20
intraflagellar transport 20 homolog (Chlamydomonas)
chr3_-_26183699 0.48 ENSDART00000147517
ENSDART00000140731
si:ch211-11k18.4
si:ch211-11k18.4
chr21_+_10701834 0.48 ENSDART00000192473
lman1
lectin, mannose-binding, 1
chr17_-_28797395 0.47 ENSDART00000134735
scfd1
sec1 family domain containing 1
chr11_-_2456656 0.47 ENSDART00000171219
ENSDART00000167938
slc2a10
solute carrier family 2 (facilitated glucose transporter), member 10
chr21_+_10702031 0.46 ENSDART00000102304
lman1
lectin, mannose-binding, 1
chr22_+_30446987 0.44 ENSDART00000146471
si:dkey-169i5.4
si:dkey-169i5.4
chr22_+_31059919 0.42 ENSDART00000077063
sec13
SEC13 homolog, nuclear pore and COPII coat complex component
chr15_-_41245962 0.42 ENSDART00000155359
smco4
single-pass membrane protein with coiled-coil domains 4
chr9_+_19529951 0.40 ENSDART00000125416
pknox1.1
pbx/knotted 1 homeobox 1.1
chr9_-_42730672 0.40 ENSDART00000136728
fkbp7
FK506 binding protein 7
chr18_-_7031409 0.39 ENSDART00000148485
ENSDART00000005405
calub
calumenin b
chr15_-_18115540 0.38 ENSDART00000131639
ENSDART00000047902
arcn1b
archain 1b
chr3_-_180860 0.35 ENSDART00000059956
ENSDART00000192506
kdelr3
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
chr2_-_23172708 0.34 ENSDART00000041365
prrx1a
paired related homeobox 1a
chr6_+_3864040 0.33 ENSDART00000013743
gorasp2
golgi reassembly stacking protein 2
chr22_-_775776 0.31 ENSDART00000149749
rbbp5
retinoblastoma binding protein 5
chr25_-_3034668 0.30 ENSDART00000053405
scamp2
secretory carrier membrane protein 2
chr23_+_17878969 0.29 ENSDART00000154934
ENSDART00000154140
ENSDART00000156331
si:ch73-390p7.2
si:ch73-390p7.2
chr5_-_48680580 0.29 ENSDART00000031194
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3
chr18_-_3542435 0.29 ENSDART00000184017
dcun1d5
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
chr20_+_34511678 0.28 ENSDART00000061588
prrx1b
paired related homeobox 1b
chr16_+_19637384 0.26 ENSDART00000184773
ENSDART00000191895
ENSDART00000182020
ENSDART00000135359
macc1
metastasis associated in colon cancer 1
chr22_-_2886937 0.25 ENSDART00000063533
aqp12
aquaporin 12
chr6_-_50685862 0.25 ENSDART00000134146
mtss1
metastasis suppressor 1
chr4_-_17812131 0.25 ENSDART00000025731
spic
Spi-C transcription factor (Spi-1/PU.1 related)
chr1_-_18592068 0.24 ENSDART00000082063
fam114a1
family with sequence similarity 114, member A1
chr7_-_30177691 0.23 ENSDART00000046689
tmed3
transmembrane p24 trafficking protein 3
chr5_-_30516646 0.22 ENSDART00000014666
arcn1a
archain 1a
chr23_-_25798099 0.22 ENSDART00000041833
fitm2
fat storage-inducing transmembrane protein 2
chr21_+_5932140 0.21 ENSDART00000193767
rexo4
REX4 homolog, 3'-5' exonuclease
chr18_-_18587745 0.21 ENSDART00000191973
sf3b3
splicing factor 3b, subunit 3
chr4_-_5795309 0.21 ENSDART00000039987
pgm3
phosphoglucomutase 3
chr12_+_13348918 0.20 ENSDART00000181373
rnasen
ribonuclease type III, nuclear
chr8_-_37461835 0.20 ENSDART00000013446
eif2d
eukaryotic translation initiation factor 2D
chr4_+_11464255 0.20 ENSDART00000008584
gdi2
GDP dissociation inhibitor 2
chr3_+_32862730 0.20 ENSDART00000144939
ENSDART00000125126
ENSDART00000144531
ENSDART00000141717
ENSDART00000137599
zgc:162613
zgc:162613
chr16_+_24684107 0.19 ENSDART00000183920
ywhabl
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like
chr19_+_20708460 0.18 ENSDART00000034124
rab5aa
RAB5A, member RAS oncogene family, a
chr7_-_45990386 0.18 ENSDART00000186008
si:ch211-260e23.7
si:ch211-260e23.7
chr18_+_7553950 0.18 ENSDART00000193420
ENSDART00000062143
zgc:77650
zgc:77650
chr9_-_29497916 0.17 ENSDART00000060246
dnajc3a
DnaJ (Hsp40) homolog, subfamily C, member 3a
chr6_-_40195510 0.16 ENSDART00000156156
col7a1
collagen, type VII, alpha 1
chr10_-_3427589 0.15 ENSDART00000133452
ENSDART00000037183
tmed2
transmembrane p24 trafficking protein 2
chr5_-_25066780 0.14 ENSDART00000002118
ENSDART00000182575
pnpla7b
patatin-like phospholipase domain containing 7b
chr10_+_31646020 0.14 ENSDART00000115251
esama
endothelial cell adhesion molecule a
chr7_-_58826164 0.14 ENSDART00000171095
sox32
SRY (sex determining region Y)-box 32
chrM_+_9735 0.13 ENSDART00000093613
mt-co3
cytochrome c oxidase III, mitochondrial
chr3_+_26123736 0.13 ENSDART00000010477
hsp70.3
heat shock cognate 70-kd protein, tandem duplicate 3
chr15_-_29387446 0.12 ENSDART00000145976
ENSDART00000035096
serpinh1b
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b
chr19_+_7549854 0.12 ENSDART00000138866
ENSDART00000151758
pbxip1a
pre-B-cell leukemia homeobox interacting protein 1a
chr10_+_15603082 0.12 ENSDART00000024450
zfand5b
zinc finger, AN1-type domain 5b
chr20_-_22464250 0.11 ENSDART00000165904
pdgfra
platelet-derived growth factor receptor, alpha polypeptide
chr9_+_34230067 0.10 ENSDART00000139157
nxpe3
neurexophilin and PC-esterase domain family, member 3
chr7_-_45990681 0.10 ENSDART00000165441
si:ch211-260e23.7
si:ch211-260e23.7
chr5_+_54685175 0.10 ENSDART00000115016
pmchl
pro-melanin-concentrating hormone, like
chr20_+_22799641 0.09 ENSDART00000131132
scfd2
sec1 family domain containing 2
chr9_+_20554896 0.09 ENSDART00000144248
man1a2
mannosidase, alpha, class 1A, member 2
chr15_+_32249062 0.08 ENSDART00000133867
ENSDART00000152545
ENSDART00000082315
ENSDART00000152513
ENSDART00000152139
arfip2a
ADP-ribosylation factor interacting protein 2a
chr4_+_58576146 0.08 ENSDART00000164911
si:ch211-212k5.4
si:ch211-212k5.4
chr12_-_35582521 0.08 ENSDART00000162175
ENSDART00000168958
sec24c
SEC24 homolog C, COPII coat complex component
chr4_+_58016732 0.08 ENSDART00000165777
CT027609.1

chr20_+_22799857 0.07 ENSDART00000058527
scfd2
sec1 family domain containing 2
chr22_-_14346575 0.07 ENSDART00000136326
si:dkeyp-122a9.1
si:dkeyp-122a9.1
chr14_-_45595711 0.07 ENSDART00000074038
scyl1
SCY1-like, kinase-like 1
chr16_+_13822137 0.06 ENSDART00000163251
flcn
folliculin
chr20_-_14875308 0.06 ENSDART00000141290
dnm3a
dynamin 3a
chr20_+_43083745 0.06 ENSDART00000139014
ENSDART00000153438
moxd1l
monooxygenase, DBH-like 1, like
chr18_-_31423569 0.05 ENSDART00000185028
CU570893.1

chr5_-_39474235 0.05 ENSDART00000171557
antxr2a
anthrax toxin receptor 2a
chr19_+_44039849 0.05 ENSDART00000086040
lrrc14b
leucine rich repeat containing 14B
chr1_-_49649122 0.04 ENSDART00000134399
slkb
STE20-like kinase b
chr9_+_45789887 0.04 ENSDART00000135202
si:dkey-34f9.3
si:dkey-34f9.3
chr13_-_9875538 0.04 ENSDART00000041609
tm9sf3
transmembrane 9 superfamily member 3
chr18_-_7481036 0.03 ENSDART00000101292
si:dkey-238c7.16
si:dkey-238c7.16
chr22_-_1168291 0.03 ENSDART00000167724
si:ch1073-181h11.4
si:ch1073-181h11.4
chr22_-_10482253 0.03 ENSDART00000143164
aspn
asporin (LRR class 1)
chr2_+_5948534 0.02 ENSDART00000124324
ENSDART00000176461
slc1a7a
solute carrier family 1 (glutamate transporter), member 7a
chr17_+_33767890 0.02 ENSDART00000193177
fut8a
fucosyltransferase 8a (alpha (1,6) fucosyltransferase)
chr7_+_13491452 0.00 ENSDART00000053535
arih1l
ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like

Network of associatons between targets according to the STRING database.

First level regulatory network of creb3l1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0050428 sulfate assimilation(GO:0000103) purine ribonucleoside bisphosphate metabolic process(GO:0034035) purine ribonucleoside bisphosphate biosynthetic process(GO:0034036) 3'-phosphoadenosine 5'-phosphosulfate metabolic process(GO:0050427) 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process(GO:0050428)
0.2 0.6 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.2 0.6 GO:0051645 Golgi localization(GO:0051645)
0.1 0.4 GO:0070278 extracellular matrix constituent secretion(GO:0070278)
0.1 0.5 GO:2000583 regulation of platelet-derived growth factor receptor signaling pathway(GO:0010640) platelet-derived growth factor receptor-alpha signaling pathway(GO:0035790) regulation of platelet-derived growth factor receptor-alpha signaling pathway(GO:2000583)
0.1 0.5 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.1 0.5 GO:0036372 opsin transport(GO:0036372)
0.1 0.2 GO:0048169 regulation of long-term neuronal synaptic plasticity(GO:0048169)
0.1 0.4 GO:0031061 negative regulation of histone methylation(GO:0031061)
0.1 0.4 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.0 0.6 GO:0006614 SRP-dependent cotranslational protein targeting to membrane(GO:0006614)
0.0 0.2 GO:0034389 lipid particle organization(GO:0034389)
0.0 0.2 GO:0034975 protein folding in endoplasmic reticulum(GO:0034975)
0.0 1.2 GO:0071391 cellular response to estrogen stimulus(GO:0071391)
0.0 0.1 GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261)
0.0 0.3 GO:0045116 protein neddylation(GO:0045116)
0.0 0.1 GO:0042420 octopamine biosynthetic process(GO:0006589) dopamine catabolic process(GO:0042420) norepinephrine biosynthetic process(GO:0042421) octopamine metabolic process(GO:0046333)
0.0 0.1 GO:1905097 regulation of guanyl-nucleotide exchange factor activity(GO:1905097) regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106)
0.0 0.1 GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation(GO:0003262)
0.0 0.2 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.6 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 1.0 GO:0007030 Golgi organization(GO:0007030)
0.0 0.2 GO:0001731 formation of translation preinitiation complex(GO:0001731)
0.0 0.5 GO:0008643 carbohydrate transport(GO:0008643)
0.0 0.1 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0033018 sarcoplasmic reticulum lumen(GO:0033018)
0.1 1.2 GO:0030663 COPI-coated vesicle membrane(GO:0030663)
0.0 0.2 GO:0098842 postsynaptic early endosome(GO:0098842)
0.0 0.4 GO:0031080 nuclear pore outer ring(GO:0031080)
0.0 0.5 GO:0030992 intraciliary transport particle B(GO:0030992)
0.0 1.6 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 0.2 GO:0071005 U2-type precatalytic spliceosome(GO:0071005)
0.0 0.4 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.3 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.1 GO:0008180 COP9 signalosome(GO:0008180)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0004779 adenylylsulfate kinase activity(GO:0004020) sulfate adenylyltransferase activity(GO:0004779) sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 0.5 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475) mannose-phosphate guanylyltransferase activity(GO:0008905)
0.1 0.4 GO:0046923 ER retention sequence binding(GO:0046923)
0.1 0.5 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.1 0.9 GO:0005537 mannose binding(GO:0005537)
0.1 0.2 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.2 GO:0030620 U2 snRNA binding(GO:0030620)
0.0 0.2 GO:0019992 diacylglycerol binding(GO:0019992)
0.0 0.1 GO:0005017 platelet-derived growth factor-activated receptor activity(GO:0005017) platelet-derived growth factor binding(GO:0048407)
0.0 0.1 GO:0004500 dopamine beta-monooxygenase activity(GO:0004500)
0.0 0.2 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.0 0.3 GO:0097602 cullin family protein binding(GO:0097602)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.9 PID TCPTP PATHWAY Signaling events mediated by TCPTP

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS Genes involved in Facilitative Na+-independent glucose transporters
0.0 0.7 REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION Genes involved in Transport to the Golgi and subsequent modification
0.0 0.2 REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS Genes involved in Synthesis of substrates in N-glycan biosythesis