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PRJEB1986: zebrafish developmental stages transcriptome

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Results for batf2+batf3

Z-value: 0.66

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Transcription factors associated with batf2+batf3

Gene Symbol Gene ID Gene Info
batf3
ENSDARG00000042577 basic leucine zipper transcription factor, ATF-like 3
batf2
ENSDARG00000105562 si_dkey-23i12.7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
batf3dr11_v1_chr20_-_37813863_37813863-0.145.8e-01Click!
si:dkey-23i12.7dr11_v1_chr7_+_25049545_250495770.077.6e-01Click!

Activity profile of batf2+batf3 motif

Sorted Z-values of batf2+batf3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_-_23308286 2.33 ENSDART00000184419
zbtb16a
zinc finger and BTB domain containing 16a
chr22_+_1911269 2.05 ENSDART00000164158
ENSDART00000168205
znf1156
zinc finger protein 1156
chr21_-_23307653 1.91 ENSDART00000140284
ENSDART00000134103
zbtb16a
zinc finger and BTB domain containing 16a
chr9_-_33121535 1.63 ENSDART00000166371
ENSDART00000138052
zgc:172014
zgc:172014
chr22_+_1668471 1.21 ENSDART00000163358
si:dkey-1b17.5
si:dkey-1b17.5
chr22_+_1947494 1.18 ENSDART00000159121
si:dkey-15h8.15
si:dkey-15h8.15
chr22_+_2183110 1.11 ENSDART00000159279
ENSDART00000121703
znf1152
zinc finger protein 1152
chr4_+_30775376 1.03 ENSDART00000158528
si:dkey-11d20.1
si:dkey-11d20.1
chr22_+_2819613 1.02 ENSDART00000131234
si:dkey-20i20.3
si:dkey-20i20.3
chr22_+_2715815 0.99 ENSDART00000042770
znf1163
zinc finger protein 1163
chr3_-_16413606 0.99 ENSDART00000127309
ENSDART00000017172
ENSDART00000136465
eftud2
elongation factor Tu GTP binding domain containing 2
chr25_-_6447835 0.97 ENSDART00000012820
snupn
snurportin 1
chr16_-_29387215 0.84 ENSDART00000148787
s100a1
S100 calcium binding protein A1
chr22_+_2228919 0.82 ENSDART00000133475
znf1161
zinc finger protein 1161
chr22_+_2403068 0.80 ENSDART00000132925
ENSDART00000132569
zgc:112977
zgc:112977
chr22_+_1821718 0.79 ENSDART00000132220
znf1002
zinc finger protein 1002
chr3_-_40162843 0.79 ENSDART00000129664
ENSDART00000025285
drg2
developmentally regulated GTP binding protein 2
chr4_-_61651223 0.78 ENSDART00000172688
si:dkey-26i24.1
si:dkey-26i24.1
chr21_-_14762944 0.77 ENSDART00000114096
arrdc1b
arrestin domain containing 1b
chr23_-_40766518 0.74 ENSDART00000127420
si:dkeyp-27c8.2
si:dkeyp-27c8.2
chr5_-_19014589 0.73 ENSDART00000002624
ranbp1
RAN binding protein 1
chr15_+_34963316 0.68 ENSDART00000153840
si:ch73-95l15.5
si:ch73-95l15.5
chr4_-_61650771 0.67 ENSDART00000168593
si:dkey-26i24.1
si:dkey-26i24.1
chr1_-_20068155 0.64 ENSDART00000102993
mettl14
methyltransferase like 14
chr22_+_1641547 0.63 ENSDART00000159804
si:dkey-1b17.2
si:dkey-1b17.2
chr22_+_2524615 0.62 ENSDART00000134277
znf1003
zinc finger protein 1003
chr4_+_70556298 0.58 ENSDART00000170985
si:dkey-11d20.1
si:dkey-11d20.1
chr16_+_27614989 0.57 ENSDART00000005625
glipr2l
GLI pathogenesis-related 2, like
chr25_-_6448050 0.56 ENSDART00000180616
snupn
snurportin 1
chr7_+_8670398 0.54 ENSDART00000164195
si:ch211-1o7.2
si:ch211-1o7.2
chr22_+_1940595 0.51 ENSDART00000163506
znf1167
zinc finger protein 1167
chr22_+_1930589 0.48 ENSDART00000159807
znf1153
zinc finger protein 1153
chr22_+_2751887 0.48 ENSDART00000133652
si:dkey-20i20.11
si:dkey-20i20.11
chr22_+_1922293 0.45 ENSDART00000165758
znf1181
zinc finger protein 1181
chr22_+_1751640 0.44 ENSDART00000162093
znf1169
zinc finger protein 1169
chr14_-_32959851 0.44 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr3_-_49514874 0.43 ENSDART00000167179
asf1ba
anti-silencing function 1Ba histone chaperone
chr3_-_40658820 0.43 ENSDART00000191948
rnf216
ring finger protein 216
chr8_-_21110233 0.42 ENSDART00000127371
ENSDART00000100276
tmco1
transmembrane and coiled-coil domains 1
chr22_+_1953096 0.41 ENSDART00000166630
ENSDART00000186234
si:dkey-15h8.16
si:dkey-15h8.16
chr22_+_1853999 0.38 ENSDART00000163288
znf1174
zinc finger protein 1174
chr22_+_2345752 0.37 ENSDART00000143687
zgc:174224
zgc:174224
chr20_-_21994901 0.37 ENSDART00000004984
daam1b
dishevelled associated activator of morphogenesis 1b
chr5_+_20823409 0.36 ENSDART00000093185
ENSDART00000142894
limk2
LIM domain kinase 2
chr10_+_28306749 0.35 ENSDART00000142016
ptrh2
peptidyl-tRNA hydrolase 2
chr22_+_2801464 0.34 ENSDART00000132419
si:dkey-20i20.7
si:dkey-20i20.7
chr22_+_2111120 0.33 ENSDART00000165525
znf1144
zinc finger protein 1144
chr22_+_2298419 0.31 ENSDART00000143499
znf1180
zinc finger protein 1180
chr5_+_11812089 0.30 ENSDART00000111359
fbxo21
F-box protein 21
chr17_+_32500387 0.26 ENSDART00000018423
ywhaqb
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide b
chr18_-_12451772 0.25 ENSDART00000175083
si:ch211-1e14.1
si:ch211-1e14.1
chr13_+_30225262 0.25 ENSDART00000141945
rps24
ribosomal protein S24
chr5_+_37035978 0.24 ENSDART00000167418
nfkbib
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta
chr10_-_20523405 0.23 ENSDART00000114824
ddhd2
DDHD domain containing 2
chr22_+_1501566 0.23 ENSDART00000167788
AL954741.3

chr4_-_25271455 0.21 ENSDART00000066936
tmem110l
transmembrane protein 110, like
chr4_+_63484571 0.20 ENSDART00000169518
ENSDART00000168681
si:dkey-11d20.1
si:dkey-11d20.1
chr4_+_30785713 0.19 ENSDART00000165945
si:dkey-178j11.5
si:dkey-178j11.5
chr22_+_30330574 0.17 ENSDART00000104751
mxi1
max interactor 1, dimerization protein
chr11_-_43226255 0.17 ENSDART00000172929
sptbn1
spectrin, beta, non-erythrocytic 1
chr16_-_54942532 0.15 ENSDART00000078887
ENSDART00000101402
tmem222a
transmembrane protein 222a
chr22_+_2844865 0.14 ENSDART00000139123
si:dkey-20i20.4
si:dkey-20i20.4
chr16_-_41667101 0.13 ENSDART00000084528
atp2c1
ATPase secretory pathway Ca2+ transporting 1
chr7_-_8156169 0.11 ENSDART00000182960
ENSDART00000190184
ENSDART00000190885
ENSDART00000189867
ENSDART00000160836
si:cabz01030277.1
si:ch211-163c2.3
si:cabz01030277.1
si:ch211-163c2.3
chr7_+_40228422 0.08 ENSDART00000052222
ptprn2
protein tyrosine phosphatase, receptor type, N polypeptide 2
chr22_+_1615691 0.05 ENSDART00000171555
si:ch211-255f4.13
si:ch211-255f4.13
chr22_+_1708760 0.02 ENSDART00000170471
si:dkey-1b17.9
si:dkey-1b17.9
chr17_+_15674052 0.01 ENSDART00000156726
bach2a
BTB and CNC homology 1, basic leucine zipper transcription factor 2a
chr22_+_2189356 0.01 ENSDART00000157502
ENSDART00000164188
znf1165
zinc finger protein 1165
chr7_+_29301497 0.00 ENSDART00000099327
rab8b
RAB8B, member RAS oncogene family
chr22_+_2390544 0.00 ENSDART00000147345
ENSDART00000133611
zgc:171435
zgc:171435

Network of associatons between targets according to the STRING database.

First level regulatory network of batf2+batf3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.5 GO:0061015 RNA import into nucleus(GO:0006404) snRNA import into nucleus(GO:0061015)
0.3 4.2 GO:0032481 positive regulation of type I interferon production(GO:0032481)
0.1 0.7 GO:0046607 positive regulation of centrosome cycle(GO:0046607)
0.1 0.6 GO:0060019 radial glial cell differentiation(GO:0060019)
0.1 0.4 GO:0034723 DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723)
0.1 0.4 GO:0032469 endoplasmic reticulum calcium ion homeostasis(GO:0032469)
0.0 0.1 GO:0055071 manganese ion homeostasis(GO:0055071)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0036396 MIS complex(GO:0036396) mRNA editing complex(GO:0045293)
0.1 1.0 GO:0071007 U2-type catalytic step 2 spliceosome(GO:0071007)
0.0 0.2 GO:0008091 spectrin(GO:0008091)
0.0 0.7 GO:0005643 nuclear pore(GO:0005643)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0030623 U5 snRNA binding(GO:0030623)
0.2 0.6 GO:0001734 mRNA (N6-adenosine)-methyltransferase activity(GO:0001734)
0.2 0.8 GO:1990756 protein binding, bridging involved in substrate recognition for ubiquitination(GO:1990756)
0.1 0.7 GO:0003993 acid phosphatase activity(GO:0003993)
0.1 1.5 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.1 0.4 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 4.2 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.7 GO:0098599 palmitoyl-(protein) hydrolase activity(GO:0008474) palmitoyl hydrolase activity(GO:0098599)
0.0 0.8 GO:0048306 calcium-dependent protein binding(GO:0048306)
0.0 0.1 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID RHOA PATHWAY RhoA signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.5 REACTOME METABOLISM OF NON CODING RNA Genes involved in Metabolism of non-coding RNA
0.0 1.0 REACTOME MRNA SPLICING MINOR PATHWAY Genes involved in mRNA Splicing - Minor Pathway
0.0 0.4 REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE Genes involved in Sema4D induced cell migration and growth-cone collapse
0.0 0.2 REACTOME RIP MEDIATED NFKB ACTIVATION VIA DAI Genes involved in RIP-mediated NFkB activation via DAI
0.0 0.7 REACTOME LATE PHASE OF HIV LIFE CYCLE Genes involved in Late Phase of HIV Life Cycle
0.0 0.2 REACTOME INTERACTION BETWEEN L1 AND ANKYRINS Genes involved in Interaction between L1 and Ankyrins