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PRJEB1986: zebrafish developmental stages transcriptome

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Results for CABZ01093502.2

Z-value: 0.50

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Transcription factors associated with CABZ01093502.2

Gene Symbol Gene ID Gene Info
CABZ01093502.2
ENSDARG00000105053 developing brain homeobox 2

Activity profile of CABZ01093502.2 motif

Sorted Z-values of CABZ01093502.2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr23_-_16485190 1.21 ENSDART00000155038
si:dkeyp-100a5.4
si:dkeyp-100a5.4
chr16_+_54209504 1.11 ENSDART00000020033
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1
chr20_+_11731039 1.09 ENSDART00000152215
ENSDART00000152585
si:ch211-155o21.3
si:ch211-155o21.3
chr21_+_28478663 0.95 ENSDART00000077887
ENSDART00000134150
slc22a6l
solute carrier family 22 (organic anion transporter), member 6, like
chr3_-_19368435 0.89 ENSDART00000132987
s1pr5a
sphingosine-1-phosphate receptor 5a
chr17_+_8799661 0.86 ENSDART00000105326
tonsl
tonsoku-like, DNA repair protein
chr6_-_58764672 0.77 ENSDART00000154322
soat2
sterol O-acyltransferase 2
chr8_-_30204650 0.76 ENSDART00000133209
zgc:162939
zgc:162939
chr20_+_40457599 0.73 ENSDART00000017553
serinc1
serine incorporator 1
chr6_+_7533601 0.72 ENSDART00000057823
pa2g4a
proliferation-associated 2G4, a
chr22_-_24818066 0.70 ENSDART00000143443
vtg6
vitellogenin 6
chr6_-_35046735 0.70 ENSDART00000143649
uap1
UDP-N-acetylglucosamine pyrophosphorylase 1
chr17_-_16422654 0.68 ENSDART00000150149
tdp1
tyrosyl-DNA phosphodiesterase 1
chr22_-_24791505 0.66 ENSDART00000136837
vtg4
vitellogenin 4
chr2_-_10877765 0.66 ENSDART00000100607
cdc7
cell division cycle 7 homolog (S. cerevisiae)
chr21_-_20328375 0.65 ENSDART00000079593
slc26a1
solute carrier family 26 (anion exchanger), member 1
chr21_+_43172506 0.60 ENSDART00000121725
zcchc10
zinc finger, CCHC domain containing 10
chr8_-_50888806 0.59 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr20_+_25586099 0.59 ENSDART00000063122
ENSDART00000134047
cyp2p10
cytochrome P450, family 2, subfamily P, polypeptide 10
chr17_-_33412868 0.56 ENSDART00000187521
BX323819.1

chr22_-_36530902 0.56 ENSDART00000056188
polr2h
info polymerase (RNA) II (DNA directed) polypeptide H
chr21_+_5926777 0.55 ENSDART00000121769
rexo4
REX4 homolog, 3'-5' exonuclease
chr2_+_10878406 0.52 ENSDART00000091497
tceanc2
transcription elongation factor A (SII) N-terminal and central domain containing 2
chr24_-_38657683 0.52 ENSDART00000154843
si:ch1073-164k15.3
si:ch1073-164k15.3
chr5_+_13394543 0.51 ENSDART00000051669
ENSDART00000135921
tctn2
tectonic family member 2
chr11_+_17984167 0.49 ENSDART00000020283
ENSDART00000188329
rpusd4
RNA pseudouridylate synthase domain containing 4
chr8_+_50953776 0.48 ENSDART00000013870
zgc:56596
zgc:56596
chr12_-_28363111 0.48 ENSDART00000016283
ENSDART00000164156
psmd11b
proteasome 26S subunit, non-ATPase 11b
chr24_+_28953089 0.46 ENSDART00000153761
rnpc3
RNA-binding region (RNP1, RRM) containing 3
chr11_-_1509773 0.46 ENSDART00000050762
phactr3b
phosphatase and actin regulator 3b
chr13_-_12602920 0.42 ENSDART00000102311
lrit3b
leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b
chr15_-_43284021 0.41 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr17_+_20589553 0.37 ENSDART00000154447
si:ch73-288o11.4
si:ch73-288o11.4
chr3_+_25166805 0.37 ENSDART00000077493
TST
zgc:162544
chr22_-_14247276 0.35 ENSDART00000033332
si:ch211-246m6.5
si:ch211-246m6.5
chr25_+_3318192 0.34 ENSDART00000146154
slc25a3b
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b
chr9_+_21793565 0.31 ENSDART00000134915
rev1
REV1, polymerase (DNA directed)
chr6_+_12527725 0.30 ENSDART00000149328
stk24b
serine/threonine kinase 24b (STE20 homolog, yeast)
chr17_-_12764360 0.30 ENSDART00000003418
brms1la
breast cancer metastasis-suppressor 1-like a
chr18_+_30847237 0.29 ENSDART00000012374
foxf1
forkhead box F1
chr23_+_4709607 0.29 ENSDART00000166503
ENSDART00000158752
ENSDART00000163860
ENSDART00000172739
raf1a
raf1a
Raf-1 proto-oncogene, serine/threonine kinase a
Raf-1 proto-oncogene, serine/threonine kinase a
chr23_-_6522099 0.28 ENSDART00000092214
ENSDART00000183380
ENSDART00000138020
bmp7b
bone morphogenetic protein 7b
chr2_+_55984788 0.27 ENSDART00000183599
nmrk2
nicotinamide riboside kinase 2
chr2_-_7845110 0.27 ENSDART00000091987
si:ch211-38m6.7
si:ch211-38m6.7
chr5_+_33498253 0.26 ENSDART00000140993
ms4a17c.2
membrane-spanning 4-domains, subfamily A, member 17c.2
chr7_-_17412559 0.25 ENSDART00000163020
nitr3a
novel immune-type receptor 3a
chr5_+_34623107 0.25 ENSDART00000184126
enc1
ectodermal-neural cortex 1
chr6_+_13117598 0.24 ENSDART00000104744
casp8l1
caspase 8, apoptosis-related cysteine peptidase, like 1
chr17_-_10122204 0.23 ENSDART00000160751
BX088587.1

chr3_-_40054615 0.23 ENSDART00000003511
ENSDART00000102540
ENSDART00000146121
llgl1
lethal giant larvae homolog 1 (Drosophila)
chr13_+_35528607 0.21 ENSDART00000075414
ENSDART00000112947
wdr27
WD repeat domain 27
chr16_+_23303859 0.21 ENSDART00000006093
slc50a1
solute carrier family 50 (sugar efflux transporter), member 1
chr2_+_19522082 0.21 ENSDART00000146098
pimr49
Pim proto-oncogene, serine/threonine kinase, related 49
chr16_+_24733741 0.20 ENSDART00000155217
si:dkey-79d12.4
si:dkey-79d12.4
chr5_+_9224051 0.17 ENSDART00000139265
si:ch211-12e13.12
si:ch211-12e13.12
chr2_-_59327299 0.16 ENSDART00000133734
ftr36
finTRIM family, member 36
chr1_+_58242498 0.15 ENSDART00000149091
ggt1l2.2
gamma-glutamyltransferase 1 like 2.2
chr23_+_21405201 0.15 ENSDART00000144409
iffo2a
intermediate filament family orphan 2a
chr4_+_59845617 0.15 ENSDART00000167626
ENSDART00000123157
si:dkey-196n19.2
si:dkey-196n19.2
chr8_-_53044300 0.14 ENSDART00000191653
nr6a1a
nuclear receptor subfamily 6, group A, member 1a
chr12_-_10409961 0.14 ENSDART00000149521
ENSDART00000052001
eef2k
eukaryotic elongation factor 2 kinase
chr2_+_19578446 0.13 ENSDART00000164758
pimr50
Pim proto-oncogene, serine/threonine kinase, related 50
chr19_+_43780970 0.13 ENSDART00000063870
rpl11
ribosomal protein L11
chr22_+_2751887 0.12 ENSDART00000133652
si:dkey-20i20.11
si:dkey-20i20.11
chr3_+_26145013 0.11 ENSDART00000162546
ENSDART00000129561
atp2a1
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
chr19_+_33093577 0.09 ENSDART00000180317
fam91a1
family with sequence similarity 91, member A1
chr15_-_21014270 0.09 ENSDART00000154019
si:ch211-212c13.10
si:ch211-212c13.10
chr8_-_20230802 0.08 ENSDART00000063400
mllt1a
MLLT1, super elongation complex subunit a
chr2_+_14992879 0.07 ENSDART00000137546
pimr55
Pim proto-oncogene, serine/threonine kinase, related 55
chr9_-_32177117 0.07 ENSDART00000078568
sf3b1
splicing factor 3b, subunit 1
chr13_-_38730267 0.07 ENSDART00000157524
lmbrd1
LMBR1 domain containing 1
chr10_-_20339113 0.06 ENSDART00000144378
ENSDART00000098600
zmat4b
zinc finger, matrin-type 4b
chr20_-_9095105 0.05 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr9_-_51436377 0.05 ENSDART00000006612
tbr1b
T-box, brain, 1b
chr23_+_384850 0.04 ENSDART00000114000
zgc:101663
zgc:101663
chr1_-_31171242 0.00 ENSDART00000190294
kcnq5b
potassium voltage-gated channel, KQT-like subfamily, member 5b

Network of associatons between targets according to the STRING database.

First level regulatory network of CABZ01093502.2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0000012 single strand break repair(GO:0000012)
0.2 0.6 GO:0019532 oxalate transport(GO:0019532)
0.1 0.5 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.1 0.8 GO:0034434 steroid esterification(GO:0034433) sterol esterification(GO:0034434) cholesterol esterification(GO:0034435)
0.1 0.5 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.3 GO:0070987 error-free translesion synthesis(GO:0070987)
0.1 0.7 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.5 GO:0071816 tail-anchored membrane protein insertion into ER membrane(GO:0071816)
0.0 0.5 GO:1904491 protein localization to ciliary transition zone(GO:1904491)
0.0 0.3 GO:0005513 detection of calcium ion(GO:0005513)
0.0 0.9 GO:0031297 replication fork processing(GO:0031297)
0.0 0.7 GO:0006658 phosphatidylserine metabolic process(GO:0006658)
0.0 0.7 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.0 1.4 GO:0032355 response to estradiol(GO:0032355)
0.0 0.5 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.1 GO:0090076 regulation of twitch skeletal muscle contraction(GO:0014724) regulation of fast-twitch skeletal muscle fiber contraction(GO:0031446) positive regulation of fast-twitch skeletal muscle fiber contraction(GO:0031448) negative regulation of striated muscle contraction(GO:0045988) relaxation of skeletal muscle(GO:0090076)
0.0 0.6 GO:0035338 long-chain fatty-acyl-CoA biosynthetic process(GO:0035338)
0.0 0.3 GO:0000186 activation of MAPKK activity(GO:0000186)
0.0 0.2 GO:0032878 regulation of establishment or maintenance of cell polarity(GO:0032878)
0.0 0.3 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.0 0.6 GO:0042737 drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0005662 DNA replication factor A complex(GO:0005662)
0.1 0.5 GO:0071818 BAT3 complex(GO:0071818)
0.1 0.6 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.5 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.0 0.5 GO:0036038 MKS complex(GO:0036038)
0.0 0.1 GO:0031673 H zone(GO:0031673)
0.0 0.5 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.3 GO:0070822 Sin3-type complex(GO:0070822)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.2 1.4 GO:0045735 nutrient reservoir activity(GO:0045735)
0.2 0.8 GO:0004772 sterol O-acyltransferase activity(GO:0004772) cholesterol O-acyltransferase activity(GO:0034736)
0.1 0.7 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.5 GO:0030626 U12 snRNA binding(GO:0030626)
0.1 0.9 GO:0038036 sphingosine-1-phosphate receptor activity(GO:0038036)
0.1 0.6 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.0 0.3 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.0 1.4 GO:0003684 damaged DNA binding(GO:0003684)
0.0 0.6 GO:0019531 oxalate transmembrane transporter activity(GO:0019531)
0.0 0.3 GO:0070700 BMP receptor binding(GO:0070700)
0.0 0.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.3 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.2 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.0 0.3 GO:0015269 calcium-activated potassium channel activity(GO:0015269)
0.0 0.5 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.0 0.2 GO:0045159 myosin II binding(GO:0045159)
0.0 0.0 GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.9 ST TUMOR NECROSIS FACTOR PATHWAY Tumor Necrosis Factor Pathway.
0.0 1.1 PID FOXM1 PATHWAY FOXM1 transcription factor network
0.0 0.1 PID P38 GAMMA DELTA PATHWAY Signaling mediated by p38-gamma and p38-delta

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.1 REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway
0.0 0.6 REACTOME VIRAL MESSENGER RNA SYNTHESIS Genes involved in Viral Messenger RNA Synthesis
0.0 0.7 REACTOME DOUBLE STRAND BREAK REPAIR Genes involved in Double-Strand Break Repair
0.0 0.7 REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX Genes involved in Activation of the pre-replicative complex
0.0 0.4 REACTOME SULFUR AMINO ACID METABOLISM Genes involved in Sulfur amino acid metabolism
0.0 0.1 REACTOME MTORC1 MEDIATED SIGNALLING Genes involved in mTORC1-mediated signalling