PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nr6a1b | dr11_v1_chr21_+_8198652_8198652 | 0.30 | 3.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_10539293 Show fit | 5.51 |
ENSDART00000182265
|
serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, like |
|
chr12_+_33395748 Show fit | 5.19 |
ENSDART00000129458
|
fatty acid synthase |
|
chr16_-_45235947 Show fit | 5.06 |
ENSDART00000164436
|
si:dkey-33i11.4 |
|
chr5_+_20693724 Show fit | 4.73 |
ENSDART00000141368
|
si:ch211-240b21.2 |
|
chr3_+_39540014 Show fit | 4.35 |
ENSDART00000074848
|
zgc:165423 |
|
chr3_+_12652244 Show fit | 3.96 |
ENSDART00000165980
|
ATP-binding cassette, sub-family A (ABC1), member 3b |
|
chr5_-_50992690 Show fit | 3.90 |
ENSDART00000149553
ENSDART00000097460 ENSDART00000192021 |
3-hydroxy-3-methylglutaryl-CoA reductase a |
|
chr3_-_40976463 Show fit | 3.43 |
ENSDART00000128450
ENSDART00000018676 |
cytochrome P450, family 3, subfamily c, polypeptide 1 |
|
chr23_-_19953089 Show fit | 3.39 |
ENSDART00000153828
|
ATPase plasma membrane Ca2+ transporting 3b |
|
chr16_+_23811554 Show fit | 3.27 |
ENSDART00000114336
|
si:dkey-7f3.9 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.1 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.1 | 5.5 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 5.4 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.0 | 3.8 | GO:0031101 | fin regeneration(GO:0031101) |
0.0 | 3.4 | GO:0051480 | regulation of cytosolic calcium ion concentration(GO:0051480) |
0.5 | 3.3 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
0.3 | 3.0 | GO:1902221 | L-phenylalanine metabolic process(GO:0006558) L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process(GO:1902221) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222) |
0.3 | 2.1 | GO:0016559 | peroxisome fission(GO:0016559) |
0.0 | 2.1 | GO:0043044 | ATP-dependent chromatin remodeling(GO:0043044) |
0.0 | 2.1 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.9 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 3.5 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.3 | 3.0 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 2.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 2.4 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.0 | 2.4 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.3 | 2.1 | GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221) |
0.3 | 2.1 | GO:0005779 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
0.1 | 2.1 | GO:0071564 | npBAF complex(GO:0071564) |
0.6 | 1.8 | GO:0034456 | CURI complex(GO:0032545) UTP-C complex(GO:0034456) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 5.5 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 4.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 4.0 | GO:0042626 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
0.1 | 3.9 | GO:0050661 | NADP binding(GO:0050661) |
0.1 | 3.4 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.8 | 3.3 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.3 | 3.0 | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714) |
0.0 | 3.0 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 2.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.8 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 3.2 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.1 | 3.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 2.3 | PID FOXO PATHWAY | FoxO family signaling |
0.1 | 2.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 2.0 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.2 | 1.8 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.1 | 1.2 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 0.9 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 0.8 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 7.4 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |
0.5 | 2.0 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.2 | 1.9 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.1 | 1.8 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.0 | 1.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.3 | 1.5 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.1 | 1.3 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.1 | 0.9 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.1 | 0.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.1 | 0.8 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |