PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nkx2.4a | dr11_v1_chr17_-_42097267_42097267 | 0.13 | 2.2e-01 | Click! |
nkx2.4b | dr11_v1_chr20_+_48803248_48803248 | 0.11 | 2.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_22139566 Show fit | 3.11 |
ENSDART00000149017
|
sodium channel, voltage-gated, type III, beta |
|
chr1_-_38816685 Show fit | 2.74 |
ENSDART00000075230
|
ankyrin repeat and SOCS box containing 5b |
|
chr7_-_35708450 Show fit | 2.63 |
ENSDART00000193886
|
iroquois homeobox 5a |
|
chr13_-_51846224 Show fit | 2.43 |
ENSDART00000184663
|
|
|
chr5_-_28915130 Show fit | 2.39 |
ENSDART00000078592
|
neural proliferation, differentiation and control, 1b |
|
chr1_-_14234076 Show fit | 1.92 |
ENSDART00000040049
|
calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2 |
|
chr17_+_27456804 Show fit | 1.88 |
ENSDART00000017756
ENSDART00000181461 ENSDART00000180178 |
cathepsin L.1 |
|
chr23_-_35347714 Show fit | 1.71 |
ENSDART00000161770
ENSDART00000165615 |
copine family member IX |
|
chr8_-_30316436 Show fit | 1.59 |
ENSDART00000111358
ENSDART00000167065 |
zgc:162939 |
|
chr2_-_898899 Show fit | 1.56 |
ENSDART00000058289
|
dual specificity phosphatase 22b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.1 | GO:0086005 | ventricular cardiac muscle cell action potential(GO:0086005) |
0.3 | 2.6 | GO:0072498 | embryonic skeletal joint development(GO:0072498) |
0.0 | 2.2 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.0 | 1.9 | GO:0045732 | positive regulation of protein catabolic process(GO:0045732) |
0.1 | 1.8 | GO:0002043 | blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:0002043) |
0.0 | 1.6 | GO:0046330 | positive regulation of JNK cascade(GO:0046330) |
0.0 | 1.5 | GO:0042149 | cellular response to glucose starvation(GO:0042149) |
0.0 | 1.5 | GO:0030865 | cortical cytoskeleton organization(GO:0030865) |
0.1 | 1.4 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.4 | 1.2 | GO:0006043 | glucosamine metabolic process(GO:0006041) glucosamine catabolic process(GO:0006043) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.1 | 1.5 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
0.0 | 1.3 | GO:0072686 | mitotic spindle(GO:0072686) |
0.0 | 0.6 | GO:0030496 | midbody(GO:0030496) |
0.1 | 0.5 | GO:0042583 | chromaffin granule(GO:0042583) |
0.0 | 0.5 | GO:0005869 | dynactin complex(GO:0005869) |
0.1 | 0.3 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
0.0 | 0.3 | GO:1990130 | Iml1 complex(GO:1990130) |
0.0 | 0.2 | GO:0043034 | costamere(GO:0043034) |
0.0 | 0.2 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.4 | 2.9 | GO:0019871 | sodium channel inhibitor activity(GO:0019871) |
0.0 | 2.5 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
0.0 | 1.9 | GO:0019901 | protein kinase binding(GO:0019901) |
0.0 | 1.8 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.2 | 1.6 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 1.6 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
0.1 | 1.5 | GO:0016208 | AMP binding(GO:0016208) |
0.0 | 1.4 | GO:0017147 | Wnt-protein binding(GO:0017147) |
0.4 | 1.2 | GO:0004342 | glucosamine-6-phosphate deaminase activity(GO:0004342) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 1.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 1.0 | ST STAT3 PATHWAY | STAT3 Pathway |
0.0 | 0.9 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 0.6 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.1 | 0.6 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.6 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 0.4 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 0.4 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 0.4 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.2 | 1.6 | REACTOME DCC MEDIATED ATTRACTIVE SIGNALING | Genes involved in DCC mediated attractive signaling |
0.0 | 1.1 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 0.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.6 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.0 | 0.5 | REACTOME EICOSANOID LIGAND BINDING RECEPTORS | Genes involved in Eicosanoid ligand-binding receptors |
0.1 | 0.4 | REACTOME INFLAMMASOMES | Genes involved in Inflammasomes |
0.0 | 0.4 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.0 | 0.4 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.0 | 0.3 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |