PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000015890 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) | |
ENSDARG00000070542 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Bb | |
ENSDARG00000099120 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Bb |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mafbb | dr11_v1_chr11_-_25384213_25384213 | 0.20 | 5.4e-02 | Click! |
mafa | dr11_v1_chr18_+_29403017_29403017 | 0.18 | 7.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_18030938 Show fit | 33.90 |
ENSDART00000013540
|
si:ch73-141c7.1 |
|
chr13_-_20381485 Show fit | 31.01 |
ENSDART00000131351
|
si:ch211-270n8.1 |
|
chr22_-_24738188 Show fit | 23.83 |
ENSDART00000050238
|
vitellogenin 1 |
|
chr2_+_25816843 Show fit | 21.26 |
ENSDART00000078639
|
solute carrier family 2 (facilitated glucose transporter), member 2 |
|
chr10_+_10801564 Show fit | 20.16 |
ENSDART00000027026
|
alpha-1-microglobulin/bikunin precursor |
|
chr10_+_10801719 Show fit | 19.59 |
ENSDART00000193648
|
alpha-1-microglobulin/bikunin precursor |
|
chr24_-_12938922 Show fit | 19.40 |
ENSDART00000024084
|
phosphoenolpyruvate carboxykinase 2 (mitochondrial) |
|
chr13_+_2908764 Show fit | 19.33 |
ENSDART00000162362
|
wu:fj16a03 |
|
chr22_-_24880824 Show fit | 18.22 |
ENSDART00000061165
|
vitellogenin 2 |
|
chr22_-_24757785 Show fit | 17.53 |
ENSDART00000078225
|
vitellogenin 5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 41.4 | GO:0032355 | response to estradiol(GO:0032355) |
0.8 | 39.8 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
1.5 | 30.3 | GO:0006744 | ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744) quinone biosynthetic process(GO:1901663) |
5.3 | 21.3 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
3.5 | 21.2 | GO:0050764 | regulation of phagocytosis(GO:0050764) |
4.9 | 19.4 | GO:0019626 | glycerol biosynthetic process(GO:0006114) alditol biosynthetic process(GO:0019401) short-chain fatty acid catabolic process(GO:0019626) response to dexamethasone(GO:0071548) |
2.5 | 14.8 | GO:0044209 | AMP salvage(GO:0044209) |
0.1 | 13.9 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.4 | 11.8 | GO:0071391 | cellular response to estrogen stimulus(GO:0071391) |
0.3 | 10.9 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 66.3 | GO:0009986 | cell surface(GO:0009986) |
0.1 | 37.2 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 19.6 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 13.4 | GO:0005739 | mitochondrion(GO:0005739) |
0.1 | 10.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.2 | 9.7 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.1 | 9.7 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.8 | 8.4 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
0.2 | 7.7 | GO:0005844 | polysome(GO:0005844) |
0.0 | 7.5 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.5 | 59.6 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
0.3 | 36.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
3.8 | 33.9 | GO:0048039 | ubiquinone binding(GO:0048039) |
0.1 | 24.0 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
3.2 | 22.1 | GO:0055056 | D-glucose transmembrane transporter activity(GO:0055056) |
0.5 | 19.4 | GO:0030145 | manganese ion binding(GO:0030145) |
0.0 | 15.5 | GO:0003723 | RNA binding(GO:0003723) |
3.0 | 14.8 | GO:0004001 | adenosine kinase activity(GO:0004001) |
0.1 | 13.4 | GO:0019901 | protein kinase binding(GO:0019901) |
0.4 | 12.8 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 22.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.5 | 21.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 15.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.4 | 11.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.3 | 11.2 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
1.3 | 10.0 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.3 | 9.7 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.3 | 8.4 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.2 | 8.3 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.0 | 7.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.0 | 21.3 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |
0.8 | 19.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 9.1 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.8 | 8.4 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.4 | 8.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.2 | 8.2 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.2 | 6.7 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.3 | 5.3 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.4 | 5.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
1.0 | 5.1 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |