Project
PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Navigation
Downloads
Results for gfi1b
Z-value: 1.48
Motif logo
Transcription factors associated with gfi1b
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| gfi1b | dr11_v1_chr21_-_17296789_17296789 | 0.12 | 2.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr17_-_12385308 Show fit | 22.72 |
ENSDART00000080927
|
synaptosomal-associated protein, 25b |
|
| chr17_+_15433671 Show fit | 20.83 |
ENSDART00000149568
|
fatty acid binding protein 7, brain, a |
|
| chr17_-_12389259 Show fit | 20.81 |
ENSDART00000185724
|
synaptosomal-associated protein, 25b |
|
| chr17_+_15433518 Show fit | 20.81 |
ENSDART00000026180
|
fatty acid binding protein 7, brain, a |
|
| chr25_+_19999623 Show fit | 17.86 |
ENSDART00000026401
|
zgc:194665 |
|
| chr1_+_12763461 Show fit | 16.35 |
ENSDART00000159226
ENSDART00000180121 |
protocadherin 10a |
|
| chr23_-_35694171 Show fit | 16.05 |
ENSDART00000077539
|
tubulin, alpha 1c |
|
| chr3_-_36440705 Show fit | 14.44 |
ENSDART00000162875
|
rogdi homolog (Drosophila) |
|
| chr7_-_26408472 Show fit | 14.01 |
ENSDART00000111494
|
galactose-3-O-sulfotransferase 4 |
|
| chr4_-_12007404 Show fit | 12.74 |
ENSDART00000092250
|
BTB (POZ) domain containing 11a |
Network of associatons between targets according to the STRING database.
First level regulatory network of gfi1b
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.1 | 43.5 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
| 0.1 | 29.1 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
| 0.9 | 16.4 | GO:0097324 | melanocyte migration(GO:0097324) |
| 1.6 | 16.3 | GO:0044805 | late nucleophagy(GO:0044805) |
| 0.3 | 16.1 | GO:0009247 | glycolipid biosynthetic process(GO:0009247) |
| 1.0 | 14.4 | GO:0007158 | neuron cell-cell adhesion(GO:0007158) |
| 0.1 | 13.6 | GO:0060070 | canonical Wnt signaling pathway(GO:0060070) |
| 0.3 | 12.2 | GO:0010921 | regulation of phosphatase activity(GO:0010921) |
| 0.2 | 11.6 | GO:0030282 | bone mineralization(GO:0030282) |
| 3.6 | 10.8 | GO:0048917 | posterior lateral line ganglion development(GO:0048917) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.3 | 43.5 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
| 0.1 | 40.3 | GO:0005874 | microtubule(GO:0005874) |
| 0.2 | 20.9 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 17.5 | GO:0005768 | endosome(GO:0005768) |
| 0.6 | 16.3 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
| 0.1 | 15.0 | GO:0036477 | somatodendritic compartment(GO:0036477) |
| 3.6 | 14.4 | GO:0043291 | RAVE complex(GO:0043291) |
| 0.0 | 14.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.2 | 10.4 | GO:0030426 | growth cone(GO:0030426) |
| 0.3 | 8.9 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 51.0 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
| 2.8 | 41.6 | GO:0005504 | fatty acid binding(GO:0005504) |
| 0.5 | 30.0 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.1 | 19.2 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.0 | 14.1 | GO:0008047 | enzyme activator activity(GO:0008047) |
| 1.6 | 14.0 | GO:0001733 | galactosylceramide sulfotransferase activity(GO:0001733) galactose 3-O-sulfotransferase activity(GO:0050694) |
| 0.1 | 12.6 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
| 1.4 | 12.2 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
| 0.3 | 10.8 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
| 0.2 | 10.8 | GO:0019707 | protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 10.0 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
| 0.1 | 6.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.4 | 5.9 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
| 0.2 | 5.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.2 | 5.6 | PID EPHB FWD PATHWAY | EPHB forward signaling |
| 0.0 | 5.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
| 0.2 | 4.9 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
| 0.2 | 3.5 | PID RHOA PATHWAY | RhoA signaling pathway |
| 0.1 | 3.0 | PID ATM PATHWAY | ATM pathway |
| 0.2 | 2.6 | ST GA12 PATHWAY | G alpha 12 Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 31.7 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
| 0.9 | 10.8 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
| 1.0 | 10.0 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
| 0.6 | 9.6 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
| 0.7 | 5.9 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
| 0.3 | 4.6 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
| 0.2 | 4.5 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 3.9 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
| 0.2 | 3.7 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
| 0.2 | 3.5 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |