PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000057652 | D site albumin promoter binding protein b | |
ENSDARG00000063014 | D site albumin promoter binding protein a | |
ENSDARG00000074752 | HLF transcription factor, PAR bZIP family member a | |
ENSDARG00000116703 | D site albumin promoter binding protein b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hlfa | dr11_v1_chr3_-_11624694_11624694 | 0.74 | 1.1e-17 | Click! |
dbpa | dr11_v1_chr19_-_10196370_10196370 | 0.70 | 4.2e-15 | Click! |
dbpb | dr11_v1_chr16_-_13613475_13613475 | 0.59 | 5.6e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_34523515 Show fit | 9.34 |
ENSDART00000041007
|
stathmin 1b |
|
chr3_-_46818001 Show fit | 9.00 |
ENSDART00000166505
|
ELAV like neuron-specific RNA binding protein 3 |
|
chr24_-_38079261 Show fit | 7.75 |
ENSDART00000105662
|
C-reactive protein 1 |
|
chr4_-_5302866 Show fit | 7.21 |
ENSDART00000138590
|
si:ch211-214j24.9 |
|
chr2_-_54387550 Show fit | 6.71 |
ENSDART00000097388
|
N-ethylmaleimide-sensitive factor attachment protein, gamma b |
|
chr1_+_31112436 Show fit | 6.71 |
ENSDART00000075340
|
eukaryotic translation elongation factor 1 alpha 1b |
|
chr23_-_27345425 Show fit | 6.24 |
ENSDART00000022042
ENSDART00000191870 |
sodium channel, voltage gated, type VIII, alpha subunit a |
|
chr21_-_43550120 Show fit | 5.82 |
ENSDART00000151627
|
si:ch73-362m14.2 |
|
chr3_-_31804481 Show fit | 5.74 |
ENSDART00000028270
|
glial fibrillary acidic protein |
|
chr25_+_7784582 Show fit | 5.59 |
ENSDART00000155016
|
diacylglycerol kinase, zeta b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.6 | GO:0050767 | regulation of neurogenesis(GO:0050767) |
0.4 | 8.1 | GO:0007205 | protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205) |
0.1 | 8.1 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.1 | 7.7 | GO:0006414 | translational elongation(GO:0006414) |
0.2 | 7.3 | GO:0007019 | microtubule depolymerization(GO:0007019) |
0.0 | 6.8 | GO:0007420 | brain development(GO:0007420) |
0.9 | 6.5 | GO:0006542 | glutamine biosynthetic process(GO:0006542) |
1.6 | 6.2 | GO:0007638 | mechanosensory behavior(GO:0007638) |
0.1 | 5.5 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
0.5 | 5.4 | GO:1901678 | heme transport(GO:0015886) iron coordination entity transport(GO:1901678) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.0 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.3 | 6.2 | GO:0034706 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.4 | 5.5 | GO:0033270 | paranode region of axon(GO:0033270) |
0.1 | 5.5 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.0 | 5.4 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
1.3 | 5.0 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.1 | 4.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 4.9 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.1 | 4.8 | GO:0031201 | SNARE complex(GO:0031201) |
0.0 | 4.8 | GO:0014069 | postsynaptic density(GO:0014069) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 11.7 | GO:0005483 | soluble NSF attachment protein activity(GO:0005483) |
0.3 | 8.4 | GO:1904315 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315) |
0.3 | 8.1 | GO:0004143 | diacylglycerol kinase activity(GO:0004143) |
0.2 | 7.7 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.0 | 7.0 | GO:0015631 | tubulin binding(GO:0015631) |
0.9 | 6.5 | GO:0016211 | glutamate-ammonia ligase activity(GO:0004356) ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880) |
0.3 | 6.2 | GO:1905030 | voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030) |
0.7 | 5.4 | GO:0015232 | heme transporter activity(GO:0015232) |
0.3 | 4.9 | GO:0051721 | protein phosphatase 2A binding(GO:0051721) |
0.0 | 4.6 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.9 | SA TRKA RECEPTOR | The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. |
0.1 | 3.8 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 3.4 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 2.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 0.6 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.5 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 0.4 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.0 | 5.7 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 4.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.2 | 2.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.1 | 2.7 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 2.0 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 2.0 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.1 | 1.9 | REACTOME ERK MAPK TARGETS | Genes involved in ERK/MAPK targets |
0.1 | 1.8 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 1.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |