PRJDB7713: Age associated transcriptome analysis in 5 tissues of zebrafish
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cebpb | dr11_v1_chr8_-_28449782_28449782 | 0.47 | 1.6e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_23440632 Show fit | 59.29 |
ENSDART00000180685
ENSDART00000042820 |
si:dkey-90m5.4 |
|
chr5_-_63509581 Show fit | 52.99 |
ENSDART00000097325
|
complement component 5 |
|
chr14_+_21106444 Show fit | 51.48 |
ENSDART00000075744
ENSDART00000132363 |
aldolase b, fructose-bisphosphate |
|
chr14_+_21107032 Show fit | 48.36 |
ENSDART00000138319
ENSDART00000139103 ENSDART00000184735 |
aldolase b, fructose-bisphosphate |
|
chr9_-_32847642 Show fit | 46.68 |
ENSDART00000121506
|
hemopexin |
|
chr8_-_50147948 Show fit | 42.04 |
ENSDART00000149010
|
haptoglobin |
|
chr13_-_20540790 Show fit | 41.58 |
ENSDART00000131467
|
si:ch1073-126c3.2 |
|
chr14_+_16345003 Show fit | 40.38 |
ENSDART00000003040
ENSDART00000165193 |
intelectin 3 |
|
chr1_-_10071422 Show fit | 32.84 |
ENSDART00000135522
ENSDART00000033118 |
fibrinogen alpha chain |
|
chr16_-_16701718 Show fit | 31.18 |
ENSDART00000143550
|
si:dkey-8k3.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.3 | 102.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
1.0 | 86.3 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
2.2 | 41.4 | GO:0042574 | retinal metabolic process(GO:0042574) |
2.2 | 32.8 | GO:0072378 | blood coagulation, fibrin clot formation(GO:0072378) |
9.6 | 28.9 | GO:0009397 | 10-formyltetrahydrofolate metabolic process(GO:0009256) 10-formyltetrahydrofolate catabolic process(GO:0009258) folic acid-containing compound catabolic process(GO:0009397) pteridine-containing compound catabolic process(GO:0042560) |
4.4 | 26.3 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
8.4 | 25.3 | GO:0006565 | L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) |
3.9 | 23.6 | GO:0002523 | leukocyte migration involved in inflammatory response(GO:0002523) |
1.3 | 23.1 | GO:0050994 | regulation of lipid catabolic process(GO:0050994) |
5.6 | 22.5 | GO:0015677 | copper ion import(GO:0015677) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 344.3 | GO:0005615 | extracellular space(GO:0005615) |
0.2 | 103.0 | GO:0005815 | microtubule organizing center(GO:0005815) |
10.9 | 32.8 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.1 | 27.2 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 24.2 | GO:0010008 | endosome membrane(GO:0010008) |
0.0 | 21.0 | GO:0005829 | cytosol(GO:0005829) |
1.9 | 19.2 | GO:0034362 | low-density lipoprotein particle(GO:0034362) |
0.2 | 19.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 13.4 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.6 | 12.7 | GO:0009925 | basal plasma membrane(GO:0009925) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 189.5 | GO:0004866 | endopeptidase inhibitor activity(GO:0004866) |
12.5 | 99.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
1.0 | 56.4 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
1.8 | 40.4 | GO:0070492 | oligosaccharide binding(GO:0070492) |
0.2 | 39.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
7.6 | 30.5 | GO:0005153 | interleukin-8 receptor binding(GO:0005153) |
9.6 | 28.9 | GO:0016155 | formyltetrahydrofolate dehydrogenase activity(GO:0016155) |
8.4 | 25.3 | GO:0070905 | glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905) |
5.6 | 22.5 | GO:0008823 | cupric reductase activity(GO:0008823) ferric-chelate reductase (NADPH) activity(GO:0052851) |
7.3 | 22.0 | GO:0004736 | pyruvate carboxylase activity(GO:0004736) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 108.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.7 | 53.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
1.9 | 32.8 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.9 | 25.4 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.2 | 23.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.4 | 21.9 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.4 | 16.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.7 | 14.1 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.8 | 11.6 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.5 | 9.0 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.8 | 99.8 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
2.3 | 59.5 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.6 | 32.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
2.7 | 32.8 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
3.9 | 31.5 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.4 | 25.4 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
1.9 | 19.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
1.1 | 16.7 | REACTOME FATTY ACYL COA BIOSYNTHESIS | Genes involved in Fatty Acyl-CoA Biosynthesis |
0.7 | 16.3 | REACTOME ACTIVATION OF GENES BY ATF4 | Genes involved in Activation of Genes by ATF4 |
1.6 | 11.5 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |