hg19_v2_chr4_+_141294628_141294821	0.226362	UUGGUCC	ENST00000512749.1|SCOC|ENSG00000153130.13|short coiled-coil protein 	ENST00000608372.1|SCOC|ENSG00000153130.13|short coiled-coil protein 	ENST00000506597.1|SCOC|ENSG00000153130.13|short coiled-coil protein 	ENST00000394201.4|SCOC|ENSG00000153130.13|short coiled-coil protein 	ENST00000510586.1|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr18_+_9136758_9136852	0.157888	UUGGUCC	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr5_-_82373260_82373315	0.15056	UUGGUCC	ENST00000502346.1|TMEM167A|ENSG00000174695.5|transmembrane protein 167A
hg19_v2_chr6_+_111195973_111195994	0.145192	UUGGUCC	ENST00000368885.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368882.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000451850.2|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368877.5|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1
hg19_v2_chr22_+_29168652_29168770	0.14353	UUGGUCC	ENST00000249064.4|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000444523.1|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000448492.2|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117 	ENST00000421503.2|CCDC117|ENSG00000159873.5|coiled-coil domain containing 117
hg19_v2_chr18_-_5296001_5296045	0.137617	UUGGUCC	ENST00000357006.4|ZBTB14|ENSG00000198081.6|zinc finger and BTB domain containing 14
hg19_v2_chrX_-_131352152_131352204	0.12979	UUGGUCC	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr8_-_53626974_53627032	0.128307	UUGGUCC	ENST00000435644.2|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000518710.1|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000025008.5|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000517963.1|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1
hg19_v2_chr13_-_40177261_40177339	0.120786	UUGGUCC	ENST00000379589.3|LHFP|ENSG00000183722.7|lipoma HMGIC fusion partner
hg19_v2_chr1_+_201924619_201924652	0.112129	UUGGUCC	ENST00000367287.4|TIMM17A|ENSG00000134375.6|translocase of inner mitochondrial membrane 17 homolog A (yeast)
hg19_v2_chr11_-_82782861_82782949	0.111684	UUGGUCC	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr5_-_37839782_37839788	0.106494	UUGGUCC	ENST00000326524.2|GDNF|ENSG00000168621.10|glial cell derived neurotrophic factor 	ENST00000515058.1|GDNF|ENSG00000168621.10|glial cell derived neurotrophic factor
hg19_v2_chr6_-_26659913_26659982	0.104836	UUGGUCC	ENST00000480036.1|ZNF322|ENSG00000181315.6|zinc finger protein 322 	ENST00000415922.2|ZNF322|ENSG00000181315.6|zinc finger protein 322
hg19_v2_chr4_-_140098339_140098392	0.0995148	UUGGUCC	ENST00000394235.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr2_+_112812778_112812800	0.098353	UUGGUCC	ENST00000283206.4|TMEM87B|ENSG00000153214.5|transmembrane protein 87B
hg19_v2_chr10_-_104474128_104474209	0.096959	UUGGUCC	ENST00000260746.5|ARL3|ENSG00000138175.8|ADP-ribosylation factor-like 3
hg19_v2_chr7_+_121513143_121513153	0.0960054	UUGGUCC	ENST00000393386.2|PTPRZ1|ENSG00000106278.7|protein tyrosine phosphatase, receptor-type, Z polypeptide 1
hg19_v2_chr6_-_17706618_17706666	0.0956377	UUGGUCC	ENST00000262077.2|NUP153|ENSG00000124789.7|nucleoporin 153kDa 	ENST00000537253.1|NUP153|ENSG00000124789.7|nucleoporin 153kDa
hg19_v2_chr12_+_79258547_79258607	0.0897463	UUGGUCC	ENST00000457153.2|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr12_-_39837192_39837206	0.0890255	UUGGUCC	ENST00000361961.3|KIF21A|ENSG00000139116.13|kinesin family member 21A 	ENST00000395670.3|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chrX_+_103411189_103411301	0.0880303	UUGGUCC	ENST00000493442.1|FAM199X|ENSG00000123575.8|family with sequence similarity 199, X-linked
hg19_v2_chr10_+_60272814_60272900	0.0877462	UUGGUCC	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr18_+_52495426_52495430	0.0864363	UUGGUCC	ENST00000262094.5|RAB27B|ENSG00000041353.5|RAB27B, member RAS oncogene family
hg19_v2_chr2_-_16847084_16847110	0.0848603	UUGGUCC	ENST00000406434.1|FAM49A|ENSG00000197872.7|family with sequence similarity 49, member A 	ENST00000381323.3|FAM49A|ENSG00000197872.7|family with sequence similarity 49, member A
hg19_v2_chr1_+_26438289_26438352	0.0845892	UUGGUCC	ENST00000374271.4|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like 	ENST00000374269.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr15_-_23034322_23034432	0.0824052	UUGGUCC	ENST00000539711.2|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2 	ENST00000560039.1|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2 	ENST00000398013.3|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2 	ENST00000337451.3|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2 	ENST00000359727.4|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2 	ENST00000398014.2|NIPA2|ENSG00000140157.10|non imprinted in Prader-Willi/Angelman syndrome 2
hg19_v2_chrX_+_40440146_40440268	0.0817709	UUGGUCC	ENST00000535539.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000378438.4|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000436783.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000544975.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000535777.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000447485.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000423649.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2
hg19_v2_chr6_+_24495067_24495096	0.0815476	UUGGUCC	ENST00000357578.3|ALDH5A1|ENSG00000112294.8|aldehyde dehydrogenase 5 family, member A1 	ENST00000546278.1|ALDH5A1|ENSG00000112294.8|aldehyde dehydrogenase 5 family, member A1 	ENST00000491546.1|ALDH5A1|ENSG00000112294.8|aldehyde dehydrogenase 5 family, member A1
hg19_v2_chr20_+_43104508_43104540	0.0804505	UUGGUCC	ENST00000262605.4|TTPAL|ENSG00000124120.6|tocopherol (alpha) transfer protein-like 	ENST00000372904.3|TTPAL|ENSG00000124120.6|tocopherol (alpha) transfer protein-like
hg19_v2_chr6_-_82462425_82462491	0.0797294	UUGGUCC	ENST00000369754.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000320172.6|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A 	ENST00000369756.3|FAM46A|ENSG00000112773.11|family with sequence similarity 46, member A
hg19_v2_chr11_-_94964354_94964374	0.0792933	UUGGUCC	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr1_+_218458625_218458660	0.0792665	UUGGUCC	ENST00000366932.3|RRP15|ENSG00000067533.5|ribosomal RNA processing 15 homolog (S. cerevisiae)
hg19_v2_chr8_-_18871159_18871201	0.0781359	UUGGUCC	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr12_-_42538657_42538720	0.0768423	UUGGUCC	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr3_+_9404526_9404782	0.0764879	UUGGUCC	ENST00000452837.2|THUMPD3|ENSG00000134077.11|THUMP domain containing 3 	ENST00000417036.1|THUMPD3|ENSG00000134077.11|THUMP domain containing 3 	ENST00000419437.1|THUMPD3|ENSG00000134077.11|THUMP domain containing 3 	ENST00000345094.3|THUMPD3|ENSG00000134077.11|THUMP domain containing 3 	ENST00000515662.2|THUMPD3|ENSG00000134077.11|THUMP domain containing 3
hg19_v2_chr7_-_28220354_28220441	0.0764407	UUGGUCC	ENST00000283928.5|JAZF1|ENSG00000153814.7|JAZF zinc finger 1
hg19_v2_chr3_-_32544900_32544900	0.0754247	UUGGUCC	ENST00000205636.3|CMTM6|ENSG00000091317.7|CKLF-like MARVEL transmembrane domain containing 6
hg19_v2_chr2_+_200775971_200775988	0.0752788	UUGGUCC	ENST00000319974.5|C2orf69|ENSG00000178074.5|chromosome 2 open reading frame 69
hg19_v2_chr4_+_113152881_113152912	0.0741327	UUGGUCC	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr14_-_64194745_64194799	0.0721412	UUGGUCC	ENST00000247225.6|SGPP1|ENSG00000126821.7|sphingosine-1-phosphate phosphatase 1
hg19_v2_chr9_-_21335356_21335411	0.0717737	UUGGUCC	ENST00000359039.4|KLHL9|ENSG00000198642.5|kelch-like family member 9
hg19_v2_chr14_-_34931458_34931562	0.0705763	UUGGUCC	ENST00000298130.4|SPTSSA|ENSG00000165389.6|serine palmitoyltransferase, small subunit A
hg19_v2_chrX_+_16737718_16737778	0.0698887	UUGGUCC	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr5_-_56247935_56247959	0.069343	UUGGUCC	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chr15_+_41851211_41851232	0.0678527	UUGGUCC	ENST00000263798.3|TYRO3|ENSG00000092445.7|TYRO3 protein tyrosine kinase
hg19_v2_chrX_+_95939711_95939786	0.065258	UUGGUCC	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr1_+_101361626_101361698	0.0651746	UUGGUCC	ENST00000370112.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr2_-_112642267_112642267	0.0650375	UUGGUCC	ENST00000341068.3|ANAPC1|ENSG00000153107.7|anaphase promoting complex subunit 1
hg19_v2_chrX_-_119694538_119694555	0.0649012	UUGGUCC	ENST00000371322.5|CUL4B|ENSG00000158290.12|cullin 4B
hg19_v2_chr1_-_212004090_212004168	0.0647617	UUGGUCC	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr1_-_205180664_205180727	0.0643097	UUGGUCC	ENST00000367161.3|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase 	ENST00000367162.3|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase 	ENST00000367160.4|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase
hg19_v2_chrX_-_135056216_135056227	0.0642906	UUGGUCC	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr19_+_34919257_34919332	0.0639845	UUGGUCC	ENST00000246548.4|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2 	ENST00000590048.2|UBA2|ENSG00000126261.8|ubiquitin-like modifier activating enzyme 2
hg19_v2_chr16_-_80838195_80838228	0.0635856	UUGGUCC	ENST00000570137.2|CDYL2|ENSG00000166446.10|chromodomain protein, Y-like 2
hg19_v2_chr20_-_52210368_52210384	0.0634583	UUGGUCC	ENST00000371471.2|ZNF217|ENSG00000171940.9|zinc finger protein 217
hg19_v2_chr9_-_5304432_5304719	0.0628657	UUGGUCC	ENST00000416837.1|RLN2|ENSG00000107014.7|relaxin 2 	ENST00000308420.3|RLN2|ENSG00000107014.7|relaxin 2
hg19_v2_chr2_-_174830430_174830563	0.0626093	UUGGUCC	ENST00000310015.6|SP3|ENSG00000172845.9|Sp3 transcription factor 	ENST00000455789.2|SP3|ENSG00000172845.9|Sp3 transcription factor
hg19_v2_chr20_-_57617831_57617964	0.0620547	UUGGUCC	ENST00000371033.5|SLMO2|ENSG00000101166.11|slowmo homolog 2 (Drosophila) 	ENST00000355937.4|SLMO2|ENSG00000101166.11|slowmo homolog 2 (Drosophila)
hg19_v2_chr9_+_106856541_106856634	0.0618168	UUGGUCC	ENST00000286398.7|SMC2|ENSG00000136824.14|structural maintenance of chromosomes 2 	ENST00000440179.1|SMC2|ENSG00000136824.14|structural maintenance of chromosomes 2 	ENST00000374793.3|SMC2|ENSG00000136824.14|structural maintenance of chromosomes 2
hg19_v2_chr4_+_6784401_6784510	0.0587491	UUGGUCC	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chr3_-_15901278_15901354	0.0585181	UUGGUCC	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr15_+_52121822_52121833	0.0580846	UUGGUCC	ENST00000558455.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous) 	ENST00000308580.7|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr1_+_47799446_47799493	0.0578538	UUGGUCC	ENST00000371873.5|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr11_-_118047376_118047388	0.0575881	UUGGUCC	ENST00000278947.5|SCN2B|ENSG00000149575.5|sodium channel, voltage-gated, type II, beta subunit
hg19_v2_chr9_-_115095883_115095947	0.0572803	UUGGUCC	ENST00000450374.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374255.2|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000334318.6|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3 	ENST00000374257.1|PTBP3|ENSG00000119314.11|polypyrimidine tract binding protein 3
hg19_v2_chr3_-_179169330_179169384	0.0566111	UUGGUCC	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr13_-_21476900_21476949	0.0558035	UUGGUCC	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr10_-_5855350_5855512	0.0555469	UUGGUCC	ENST00000456041.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380181.3|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000418688.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380132.4|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000609712.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380191.4|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2
hg19_v2_chr9_+_101867359_101867376	0.055139	UUGGUCC	ENST00000374994.4|TGFBR1|ENSG00000106799.8|transforming growth factor, beta receptor 1
hg19_v2_chr4_+_108745711_108745726	0.054868	UUGGUCC	ENST00000394684.4|SGMS2|ENSG00000164023.10|sphingomyelin synthase 2
hg19_v2_chr12_-_63328817_63328870	0.0541314	UUGGUCC	ENST00000228705.6|PPM1H|ENSG00000111110.7|protein phosphatase, Mg2+/Mn2+ dependent, 1H
hg19_v2_chr5_+_118407053_118407239	0.0539062	UUGGUCC	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr4_+_144106080_144106144	0.0531497	UUGGUCC	ENST00000307017.4|USP38|ENSG00000170185.5|ubiquitin specific peptidase 38
hg19_v2_chr4_+_52709229_52709345	0.0520519	UUGGUCC	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr17_-_33416231_33416338	0.051749	UUGGUCC	ENST00000584655.1|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000447669.2|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase 	ENST00000315249.7|RFFL|ENSG00000092871.12|ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
hg19_v2_chr3_+_25469724_25469773	0.0516846	UUGGUCC	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr4_+_128703295_128703496	0.0512005	UUGGUCC	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr9_+_5629025_5629119	0.0508948	UUGGUCC	ENST00000251879.6|KIAA1432|ENSG00000107036.7|KIAA1432 	ENST00000414202.2|KIAA1432|ENSG00000107036.7|KIAA1432
hg19_v2_chr2_-_61765315_61765422	0.0508757	UUGGUCC	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr9_-_99801592_99801592	0.0504777	UUGGUCC	ENST00000259470.5|CTSV|ENSG00000136943.6|cathepsin V
hg19_v2_chr16_+_50187556_50187779	0.0503896	UUGGUCC	ENST00000561678.1|PAPD5|ENSG00000121274.8|PAP associated domain containing 5 	ENST00000357464.3|PAPD5|ENSG00000121274.8|PAP associated domain containing 5
hg19_v2_chr17_-_43045439_43045439	0.0499195	UUGGUCC	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr5_-_79287060_79287093	0.0483013	UUGGUCC	ENST00000512560.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000509852.1|MTX3|ENSG00000177034.10|metaxin 3 	ENST00000512528.1|MTX3|ENSG00000177034.10|metaxin 3
hg19_v2_chr7_+_91570165_91570197	0.0482723	UUGGUCC	ENST00000356239.3|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000359028.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000358100.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9
hg19_v2_chr6_-_74230741_74230799	0.0479673	UUGGUCC	ENST00000316292.9|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1
hg19_v2_chr10_-_98346801_98346812	0.047884	UUGGUCC	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr5_-_65017921_65017968	0.0478671	UUGGUCC	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr12_-_109125285_109125372	0.0474349	UUGGUCC	ENST00000552871.1|CORO1C|ENSG00000110880.6|coronin, actin binding protein, 1C 	ENST00000261401.3|CORO1C|ENSG00000110880.6|coronin, actin binding protein, 1C
hg19_v2_chr1_+_193028552_193028589	0.0471004	UUGGUCC	ENST00000400968.2|TROVE2|ENSG00000116747.8|TROVE domain family, member 2 	ENST00000432079.1|TROVE2|ENSG00000116747.8|TROVE domain family, member 2
hg19_v2_chr1_-_150947343_150947479	0.0470212	UUGGUCC	ENST00000271688.6|CERS2|ENSG00000143418.15|ceramide synthase 2 	ENST00000368954.5|CERS2|ENSG00000143418.15|ceramide synthase 2
hg19_v2_chr11_-_27528301_27528336	0.0465064	UUGGUCC	ENST00000524596.1|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans) 	ENST00000278193.2|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans)
hg19_v2_chrX_+_107069063_107069123	0.0463795	UUGGUCC	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr11_+_63706444_63706486	0.0457056	UUGGUCC	ENST00000377793.4|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit 	ENST00000456907.2|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit 	ENST00000539656.1|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit
hg19_v2_chr20_-_35402123_35402221	0.0455449	UUGGUCC	ENST00000373740.3|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000426836.1|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000373745.3|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000448110.2|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000438549.1|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000447406.1|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000373750.4|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component 	ENST00000373734.4|DSN1|ENSG00000149636.11|DSN1, MIS12 kinetochore complex component
hg19_v2_chr4_-_39367949_39368020	0.0453914	UUGGUCC	ENST00000503784.1|RFC1|ENSG00000035928.10|replication factor C (activator 1) 1, 145kDa 	ENST00000349703.2|RFC1|ENSG00000035928.10|replication factor C (activator 1) 1, 145kDa 	ENST00000381897.1|RFC1|ENSG00000035928.10|replication factor C (activator 1) 1, 145kDa
hg19_v2_chr2_-_148778258_148778319	0.044971	UUGGUCC	ENST00000392857.5|ORC4|ENSG00000115947.9|origin recognition complex, subunit 4 	ENST00000457954.1|ORC4|ENSG00000115947.9|origin recognition complex, subunit 4 	ENST00000392858.1|ORC4|ENSG00000115947.9|origin recognition complex, subunit 4 	ENST00000542387.1|ORC4|ENSG00000115947.9|origin recognition complex, subunit 4
hg19_v2_chr8_-_30670384_30670394	0.0439679	UUGGUCC	ENST00000221138.4|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme 	ENST00000518243.1|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme
hg19_v2_chr8_+_81397876_81397902	0.0437739	UUGGUCC	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr9_+_2015335_2015374	0.0437677	UUGGUCC	ENST00000349721.2|SMARCA2|ENSG00000080503.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENST00000357248.2|SMARCA2|ENSG00000080503.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENST00000450198.1|SMARCA2|ENSG00000080503.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
hg19_v2_chr17_+_57408994_57409088	0.0430964	UUGGUCC	ENST00000312655.4|YPEL2|ENSG00000175155.4|yippee-like 2 (Drosophila)
hg19_v2_chrX_+_24483338_24483573	0.0417791	UUGGUCC	ENST00000379162.4|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3 	ENST00000441463.2|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3
hg19_v2_chr15_-_37390482_37390572	0.0415396	UUGGUCC	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr7_+_100728720_100728803	0.0415277	UUGGUCC	ENST00000306085.6|TRIM56|ENSG00000169871.8|tripartite motif containing 56 	ENST00000412507.1|TRIM56|ENSG00000169871.8|tripartite motif containing 56
hg19_v2_chr2_+_203499901_203499911	0.0410035	UUGGUCC	ENST00000303116.6|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B 	ENST00000392238.2|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B
hg19_v2_chr1_-_29450399_29450447	0.0409724	UUGGUCC	ENST00000521452.1|TMEM200B|ENSG00000253304.1|transmembrane protein 200B
hg19_v2_chr12_-_49110613_49110681	0.0407993	UUGGUCC	ENST00000261900.3|CCNT1|ENSG00000129315.5|cyclin T1
hg19_v2_chr12_+_124457746_124457842	0.0406084	UUGGUCC	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr6_-_52441713_52441784	0.0400472	UUGGUCC	ENST00000182527.3|TRAM2|ENSG00000065308.4|translocation associated membrane protein 2
hg19_v2_chr6_-_132272504_132272519	0.0399671	UUGGUCC	ENST00000367976.3|CTGF|ENSG00000118523.5|connective tissue growth factor
hg19_v2_chr6_-_53409890_53409927	0.0399478	UUGGUCC	ENST00000229416.6|GCLC|ENSG00000001084.6|glutamate-cysteine ligase, catalytic subunit
hg19_v2_chr3_-_194991876_194991901	0.0396665	UUGGUCC	ENST00000310380.6|XXYLT1|ENSG00000173950.11|xyloside xylosyltransferase 1
hg19_v2_chr16_-_4588822_4588834	0.0394051	UUGGUCC	ENST00000564828.1|CDIP1|ENSG00000089486.12|cell death-inducing p53 target 1
hg19_v2_chr14_-_64010046_64010107	0.0392874	UUGGUCC	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr7_+_1727755_1727755	0.0384928	UUGGUCC	ENST00000424383.2|ELFN1|ENSG00000225968.4|extracellular leucine-rich repeat and fibronectin type III domain containing 1
hg19_v2_chr2_-_209119831_209119857	0.0384807	UUGGUCC	ENST00000345146.2|IDH1|ENSG00000138413.9|isocitrate dehydrogenase 1 (NADP+), soluble
hg19_v2_chr10_+_104474207_104474297	0.0383426	UUGGUCC	ENST00000602831.1|SFXN2|ENSG00000156398.8|sideroflexin 2 	ENST00000369893.5|SFXN2|ENSG00000156398.8|sideroflexin 2
hg19_v2_chr5_+_178286925_178287007	0.0382275	UUGGUCC	ENST00000322434.3|ZNF354B|ENSG00000178338.6|zinc finger protein 354B
hg19_v2_chr17_-_33448468_33448513	0.0378443	UUGGUCC	ENST00000591723.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein  	ENST00000587405.1|RAD51D|ENSG00000185379.16|RAD51 paralog D 	ENST00000593039.1|RAD51L3-RFFL|ENSG00000267618.1|Uncharacterized protein
hg19_v2_chr4_+_113970772_113970885	0.037626	UUGGUCC	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr1_+_117910047_117910131	0.037616	UUGGUCC	ENST00000356554.3|MAN1A2|ENSG00000198162.8|mannosidase, alpha, class 1A, member 2
hg19_v2_chr16_-_15736953_15737025	0.0375564	UUGGUCC	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr14_+_90863327_90863356	0.0375349	UUGGUCC	ENST00000356978.4|CALM1|ENSG00000198668.6|calmodulin 1 (phosphorylase kinase, delta)
hg19_v2_chr2_+_33359687_33359724	0.0373859	UUGGUCC	ENST00000402934.1|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1 	ENST00000404525.1|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1 	ENST00000407925.1|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr8_+_67039131_67039176	0.03707	UUGGUCC	ENST00000315962.4|TRIM55|ENSG00000147573.12|tripartite motif containing 55 	ENST00000353317.5|TRIM55|ENSG00000147573.12|tripartite motif containing 55
hg19_v2_chr14_+_89029253_89029318	0.0368162	UUGGUCC	ENST00000251038.5|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000359301.3|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14 	ENST00000302216.8|ZC3H14|ENSG00000100722.14|zinc finger CCCH-type containing 14
hg19_v2_chr12_+_111471828_111471975	0.0357362	UUGGUCC	ENST00000261726.6|CUX2|ENSG00000111249.9|cut-like homeobox 2
hg19_v2_chr22_-_28315115_28315260	0.0355244	UUGGUCC	ENST00000455418.3|PITPNB|ENSG00000180957.13|phosphatidylinositol transfer protein, beta 	ENST00000436663.1|PITPNB|ENSG00000180957.13|phosphatidylinositol transfer protein, beta 	ENST00000320996.10|PITPNB|ENSG00000180957.13|phosphatidylinositol transfer protein, beta 	ENST00000335272.5|PITPNB|ENSG00000180957.13|phosphatidylinositol transfer protein, beta
hg19_v2_chr1_+_32573636_32573673	0.0353218	UUGGUCC	ENST00000373625.3|KPNA6|ENSG00000025800.9|karyopherin alpha 6 (importin alpha 7)
hg19_v2_chr3_+_141106643_141106681	0.0350172	UUGGUCC	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr11_-_9025541_9025596	0.0347878	UUGGUCC	ENST00000525100.1|NRIP3|ENSG00000175352.6|nuclear receptor interacting protein 3 	ENST00000309166.3|NRIP3|ENSG00000175352.6|nuclear receptor interacting protein 3 	ENST00000531090.1|NRIP3|ENSG00000175352.6|nuclear receptor interacting protein 3
hg19_v2_chr5_-_89705537_89705610	0.0330867	UUGGUCC	ENST00000522864.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522083.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522565.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000522842.1|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3 	ENST00000283122.3|CETN3|ENSG00000153140.4|centrin, EF-hand protein, 3
hg19_v2_chr2_+_64751433_64751472	0.0330773	UUGGUCC	ENST00000238856.4|AFTPH|ENSG00000119844.10|aftiphilin 	ENST00000422803.1|AFTPH|ENSG00000119844.10|aftiphilin 	ENST00000238855.7|AFTPH|ENSG00000119844.10|aftiphilin
hg19_v2_chr1_+_7831323_7831414	0.0329321	UUGGUCC	ENST00000054666.6|VAMP3|ENSG00000049245.8|vesicle-associated membrane protein 3
hg19_v2_chr21_+_44394620_44394737	0.032199	UUGGUCC	ENST00000291547.5|PKNOX1|ENSG00000160199.10|PBX/knotted 1 homeobox 1
hg19_v2_chr3_+_45730733_45730773	0.0319786	UUGGUCC	ENST00000418611.1|SACM1L|ENSG00000211456.6|SAC1 suppressor of actin mutations 1-like (yeast) 	ENST00000389061.5|SACM1L|ENSG00000211456.6|SAC1 suppressor of actin mutations 1-like (yeast)
hg19_v2_chr11_+_122709200_122709215	0.0319576	UUGGUCC	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chrX_-_77041685_77041716	0.0316537	UUGGUCC	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr6_+_133562472_133562556	0.0312861	UUGGUCC	ENST00000430974.2|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000367895.5|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355167.3|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila) 	ENST00000355286.6|EYA4|ENSG00000112319.13|eyes absent homolog 4 (Drosophila)
hg19_v2_chr1_-_51984908_51984952	0.0304154	UUGGUCC	ENST00000371730.2|EPS15|ENSG00000085832.12|epidermal growth factor receptor pathway substrate 15
hg19_v2_chr6_-_46138676_46138726	0.0300582	UUGGUCC	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr6_+_41040678_41040722	0.0294931	UUGGUCC	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr5_-_171433819_171433911	0.0294701	UUGGUCC	ENST00000296933.6|FBXW11|ENSG00000072803.13|F-box and WD repeat domain containing 11
hg19_v2_chr8_-_124286735_124286773	0.0292348	UUGGUCC	ENST00000395571.3|ZHX1|ENSG00000165156.10|zinc fingers and homeoboxes 1
hg19_v2_chr1_-_154531095_154531119	0.0292237	UUGGUCC	ENST00000292211.4|UBE2Q1|ENSG00000160714.5|ubiquitin-conjugating enzyme E2Q family member 1
hg19_v2_chr2_-_64246206_64246350	0.0291245	UUGGUCC	ENST00000409558.4|VPS54|ENSG00000143952.15|vacuolar protein sorting 54 homolog (S. cerevisiae) 	ENST00000272322.4|VPS54|ENSG00000143952.15|vacuolar protein sorting 54 homolog (S. cerevisiae)
hg19_v2_chr11_-_13484713_13484850	0.0290892	UUGGUCC	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr1_-_27816556_27816572	0.0289128	UUGGUCC	ENST00000536657.1|WASF2|ENSG00000158195.6|WAS protein family, member 2
hg19_v2_chr5_-_178157700_178157734	0.0286904	UUGGUCC	ENST00000335815.2|ZNF354A|ENSG00000169131.6|zinc finger protein 354A
hg19_v2_chr17_+_29718642_29718656	0.0286302	UUGGUCC	ENST00000325874.8|RAB11FIP4|ENSG00000131242.11|RAB11 family interacting protein 4 (class II)
hg19_v2_chr7_+_77469439_77469497	0.0285598	UUGGUCC	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr16_-_11876408_11876429	0.0282911	UUGGUCC	ENST00000396516.2|ZC3H7A|ENSG00000122299.7|zinc finger CCCH-type containing 7A
hg19_v2_chr2_+_139259324_139259389	0.0281944	UUGGUCC	ENST00000280098.4|SPOPL|ENSG00000144228.4|speckle-type POZ protein-like
hg19_v2_chr10_-_120514720_120514758	0.0277294	UUGGUCC	ENST00000369151.3|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1 	ENST00000340214.4|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1
hg19_v2_chr15_-_72612470_72612529	0.0277066	UUGGUCC	ENST00000287202.5|CELF6|ENSG00000140488.10|CUGBP, Elav-like family member 6
hg19_v2_chr11_+_61520075_61520136	0.0273035	UUGGUCC	ENST00000278836.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr14_-_78083112_78083140	0.0267181	UUGGUCC	ENST00000216484.2|SPTLC2|ENSG00000100596.2|serine palmitoyltransferase, long chain base subunit 2
hg19_v2_chr17_+_46985731_46985777	0.0264593	UUGGUCC	ENST00000360943.5|UBE2Z|ENSG00000159202.13|ubiquitin-conjugating enzyme E2Z
hg19_v2_chr3_-_155572164_155572236	0.026343	UUGGUCC	ENST00000392845.3|SLC33A1|ENSG00000169359.9|solute carrier family 33 (acetyl-CoA transporter), member 1 	ENST00000359479.3|SLC33A1|ENSG00000169359.9|solute carrier family 33 (acetyl-CoA transporter), member 1
hg19_v2_chr19_-_8070474_8070564	0.0259318	UUGGUCC	ENST00000407627.2|ELAVL1|ENSG00000066044.9|ELAV like RNA binding protein 1 	ENST00000593807.1|ELAVL1|ENSG00000066044.9|ELAV like RNA binding protein 1
hg19_v2_chr16_-_67185117_67185117	0.0258638	UUGGUCC	ENST00000449549.3|B3GNT9|ENSG00000237172.3|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
hg19_v2_chr2_-_161350305_161350391	0.0258079	UUGGUCC	ENST00000348849.3|RBMS1|ENSG00000153250.13|RNA binding motif, single stranded interacting protein 1
hg19_v2_chr12_+_27485823_27485868	0.0253737	UUGGUCC	ENST00000395901.2|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2 	ENST00000546179.1|ARNTL2|ENSG00000029153.10|aryl hydrocarbon receptor nuclear translocator-like 2
hg19_v2_chr2_+_62423242_62423288	0.0253661	UUGGUCC	ENST00000301998.4|B3GNT2|ENSG00000170340.10|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
hg19_v2_chr12_-_77459306_77459365	0.0251517	UUGGUCC	ENST00000547316.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000416496.2|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000550669.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000322886.7|E2F7|ENSG00000165891.11|E2F transcription factor 7
hg19_v2_chr5_+_179159813_179159851	0.0249777	UUGGUCC	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr3_-_148804275_148804346	0.0248081	UUGGUCC	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr3_-_123168551_123168642	0.0245646	UUGGUCC	ENST00000462833.1|ADCY5|ENSG00000173175.10|adenylate cyclase 5
hg19_v2_chr18_-_35145593_35145614	0.0244251	UUGGUCC	ENST00000334919.5|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000591282.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4 	ENST00000588597.1|CELF4|ENSG00000101489.14|CUGBP, Elav-like family member 4
hg19_v2_chr3_-_88108192_88108203	0.0243005	UUGGUCC	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr3_+_43328004_43328095	0.0239376	UUGGUCC	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr7_+_55433131_55433142	0.0230996	UUGGUCC	ENST00000254770.2|LANCL2|ENSG00000132434.5|LanC lantibiotic synthetase component C-like 2 (bacterial)
hg19_v2_chr1_+_36690011_36690092	0.0230973	UUGGUCC	ENST00000354618.5|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000469141.2|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000478853.1|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3
hg19_v2_chr4_+_111397216_111397250	0.0223032	UUGGUCC	ENST00000265162.5|ENPEP|ENSG00000138792.5|glutamyl aminopeptidase (aminopeptidase A)
hg19_v2_chr15_+_44829255_44829331	0.0217913	UUGGUCC	ENST00000261868.5|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J 	ENST00000424492.3|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J
hg19_v2_chr17_+_21279509_21279697	0.0217408	UUGGUCC	ENST00000583088.1|KCNJ12|ENSG00000184185.5|potassium inwardly-rectifying channel, subfamily J, member 12
hg19_v2_chr6_-_111927449_111927482	0.0217368	UUGGUCC	ENST00000368761.5|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000392556.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000340026.6|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr3_-_196159268_196159345	0.021424	UUGGUCC	ENST00000381887.3|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000535858.1|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000428095.1|UBXN7|ENSG00000163960.7|UBX domain protein 7 	ENST00000296328.4|UBXN7|ENSG00000163960.7|UBX domain protein 7
hg19_v2_chr6_+_163835669_163835693	0.0211802	UUGGUCC	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr12_+_69864129_69864222	0.0206913	UUGGUCC	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr9_-_20622478_20622542	0.0204838	UUGGUCC	ENST00000355930.6|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENST00000380338.4|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr2_+_179345173_179345221	0.0202842	UUGGUCC	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr3_-_160823040_160823151	0.0202088	UUGGUCC	ENST00000484127.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000492353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000473142.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000468268.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000460353.1|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000320474.4|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 	ENST00000392781.2|B3GALNT1|ENSG00000169255.9|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
hg19_v2_chr1_+_213031570_213031597	0.0200122	UUGGUCC	ENST00000366971.4|FLVCR1|ENSG00000162769.8|feline leukemia virus subgroup C cellular receptor 1
hg19_v2_chr1_+_40505891_40505995	0.0200048	UUGGUCC	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chrX_+_14547632_14547682	0.0199047	UUGGUCC	ENST00000218075.4|GLRA2|ENSG00000101958.9|glycine receptor, alpha 2
hg19_v2_chr12_+_110719032_110719113	0.0197898	UUGGUCC	ENST00000395494.2|ATP2A2|ENSG00000174437.12|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
hg19_v2_chr17_-_36956155_36956223	0.0197555	UUGGUCC	ENST00000269554.3|PIP4K2B|ENSG00000141720.7|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
hg19_v2_chr17_-_6459768_6459799	0.0192565	UUGGUCC	ENST00000421306.3|PITPNM3|ENSG00000091622.11|PITPNM family member 3
hg19_v2_chr8_+_26240414_26240631	0.0192279	UUGGUCC	ENST00000380629.2|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr18_-_61089665_61089733	0.0188209	UUGGUCC	ENST00000238497.5|VPS4B|ENSG00000119541.5|vacuolar protein sorting 4 homolog B (S. cerevisiae)
hg19_v2_chr4_+_41937131_41937211	0.0186167	UUGGUCC	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr4_+_39699664_39699772	0.0185053	UUGGUCC	ENST00000261427.5|UBE2K|ENSG00000078140.9|ubiquitin-conjugating enzyme E2K 	ENST00000510934.1|UBE2K|ENSG00000078140.9|ubiquitin-conjugating enzyme E2K 	ENST00000295963.6|UBE2K|ENSG00000078140.9|ubiquitin-conjugating enzyme E2K
hg19_v2_chr20_+_23342783_23342957	0.018445	UUGGUCC	ENST00000544236.1|GZF1|ENSG00000125812.11|GDNF-inducible zinc finger protein 1 	ENST00000338121.5|GZF1|ENSG00000125812.11|GDNF-inducible zinc finger protein 1 	ENST00000542987.1|GZF1|ENSG00000125812.11|GDNF-inducible zinc finger protein 1 	ENST00000424216.1|GZF1|ENSG00000125812.11|GDNF-inducible zinc finger protein 1
hg19_v2_chr12_-_57030115_57030177	0.0184114	UUGGUCC	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr6_+_147830063_147830063	0.0173281	UUGGUCC	ENST00000367474.1|SAMD5|ENSG00000203727.3|sterile alpha motif domain containing 5
hg19_v2_chr2_+_97454321_97454332	0.016952	UUGGUCC	ENST00000540067.1|CNNM4|ENSG00000158158.7|cyclin M4
hg19_v2_chr1_+_78245303_78245351	0.0168176	UUGGUCC	ENST00000370791.3|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A 	ENST00000443751.2|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A
hg19_v2_chr12_+_51442101_51442129	0.0164638	UUGGUCC	ENST00000550929.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000262055.4|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000550442.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000549340.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548209.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548251.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000550814.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000547660.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000380123.2|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548401.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000418425.2|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000547008.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000552739.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1
hg19_v2_chr11_+_76777979_76778027	0.0161098	UUGGUCC	ENST00000531028.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000278559.3|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000527066.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000529629.1|CAPN5|ENSG00000149260.10|calpain 5
hg19_v2_chr5_-_137878887_137878989	0.0158054	UUGGUCC	ENST00000507939.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000572514.1|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000499810.2|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1 	ENST00000360541.5|ETF1|ENSG00000120705.8|eukaryotic translation termination factor 1
hg19_v2_chr10_+_116581503_116581570	0.0157933	UUGGUCC	ENST00000369248.4|FAM160B1|ENSG00000151553.10|family with sequence similarity 160, member B1 	ENST00000369250.3|FAM160B1|ENSG00000151553.10|family with sequence similarity 160, member B1 	ENST00000369246.1|FAM160B1|ENSG00000151553.10|family with sequence similarity 160, member B1
hg19_v2_chr18_-_78005231_78005435	0.0156809	UUGGUCC	ENST00000470488.2|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma 	ENST00000353265.3|PARD6G|ENSG00000178184.11|par-6 family cell polarity regulator gamma
hg19_v2_chr17_+_5031687_5031687	0.0156508	UUGGUCC	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr14_-_25519095_25519280	0.015375	UUGGUCC	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr16_+_19125252_19125267	0.0153148	UUGGUCC	ENST00000566735.1|ITPRIPL2|ENSG00000205730.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 2 	ENST00000381440.3|ITPRIPL2|ENSG00000205730.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 2
hg19_v2_chr2_+_177053307_177053402	0.0153105	UUGGUCC	ENST00000331462.4|HOXD1|ENSG00000128645.11|homeobox D1
hg19_v2_chr1_+_107599267_107599340	0.0152923	UUGGUCC	ENST00000361318.5|PRMT6|ENSG00000198890.6|protein arginine methyltransferase 6 	ENST00000370078.1|PRMT6|ENSG00000198890.6|protein arginine methyltransferase 6
hg19_v2_chr1_-_149982624_149982719	0.0141928	UUGGUCC	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
hg19_v2_chr20_-_39928705_39928740	0.0139504	UUGGUCC	ENST00000436099.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000309060.3|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000373261.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000436440.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000540170.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000557816.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000560361.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr16_-_58663720_58663790	0.0138092	UUGGUCC	ENST00000564557.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569240.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000441024.2|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000569020.1|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1 	ENST00000317147.5|CNOT1|ENSG00000125107.12|CCR4-NOT transcription complex, subunit 1
hg19_v2_chrX_+_41192595_41192651	0.0137177	UUGGUCC	ENST00000399959.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr1_+_61547894_61547980	0.0135842	UUGGUCC	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr1_+_109102652_109102728	0.0135379	UUGGUCC	ENST00000370035.3|FAM102B|ENSG00000162636.11|family with sequence similarity 102, member B 	ENST00000405454.1|FAM102B|ENSG00000162636.11|family with sequence similarity 102, member B
hg19_v2_chr17_+_40834580_40834633	0.0134082	UUGGUCC	ENST00000264638.4|CNTNAP1|ENSG00000108797.7|contactin associated protein 1
hg19_v2_chr17_-_36831156_36831187	0.0133726	UUGGUCC	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr9_+_78505581_78505621	0.0132848	UUGGUCC	ENST00000376767.3|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5 	ENST00000376752.4|PCSK5|ENSG00000099139.9|proprotein convertase subtilisin/kexin type 5
hg19_v2_chr1_-_159893507_159893537	0.0132728	UUGGUCC	ENST00000368096.1|TAGLN2|ENSG00000158710.10|transgelin 2
hg19_v2_chr1_+_28995231_28995250	0.0132247	UUGGUCC	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr9_+_34958254_34958321	0.0131885	UUGGUCC	ENST00000242315.3|KIAA1045|ENSG00000122733.11|KIAA1045
hg19_v2_chr5_-_127873659_127873735	0.0131225	UUGGUCC	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chrX_+_64887512_64887537	0.0131065	UUGGUCC	ENST00000360270.5|MSN|ENSG00000147065.12|moesin
hg19_v2_chr4_+_37245799_37245842	0.0130939	UUGGUCC	ENST00000309447.5|KIAA1239|ENSG00000174145.7|KIAA1239
hg19_v2_chr3_-_179754706_179754732	0.0129075	UUGGUCC	ENST00000465751.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like 	ENST00000467460.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like
hg19_v2_chr9_+_130026756_130026871	0.012855	UUGGUCC	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chrX_+_9431324_9431371	0.0128481	UUGGUCC	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr8_-_95565673_95565757	0.0128331	UUGGUCC	ENST00000437199.1|KIAA1429|ENSG00000164944.7|KIAA1429 	ENST00000297591.5|KIAA1429|ENSG00000164944.7|KIAA1429 	ENST00000421249.2|KIAA1429|ENSG00000164944.7|KIAA1429
hg19_v2_chr3_-_171178157_171178225	0.0128307	UUGGUCC	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr5_-_168006591_168006638	0.0125632	UUGGUCC	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr2_-_208030647_208030689	0.0123781	UUGGUCC	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr12_+_72666407_72666463	0.0123534	UUGGUCC	ENST00000261180.4|TRHDE|ENSG00000072657.4|thyrotropin-releasing hormone degrading enzyme
hg19_v2_chr5_-_141704566_141704605	0.012286	UUGGUCC	ENST00000344120.4|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila) 	ENST00000434127.2|SPRY4|ENSG00000187678.8|sprouty homolog 4 (Drosophila)
hg19_v2_chr7_+_30067973_30068063	0.0119728	UUGGUCC	ENST00000258679.7|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000449726.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396257.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396259.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr1_+_203764742_203764834	0.0118116	UUGGUCC	ENST00000432282.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000453771.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367214.1|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000367212.3|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A 	ENST00000332127.4|ZC3H11A|ENSG00000058673.11|zinc finger CCCH-type containing 11A
hg19_v2_chr16_-_75018968_75019054	0.0117893	UUGGUCC	ENST00000262144.6|WDR59|ENSG00000103091.10|WD repeat domain 59
hg19_v2_chr8_-_134309335_134309503	0.0116714	UUGGUCC	ENST00000522890.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000323851.7|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518176.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000354944.5|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000537882.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000522476.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518066.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000521544.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518480.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000523892.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1
hg19_v2_chr1_+_33207381_33207486	0.0115388	UUGGUCC	ENST00000401073.2|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr1_+_218519577_218519594	0.0107473	UUGGUCC	ENST00000366930.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2 	ENST00000366929.4|TGFB2|ENSG00000092969.7|transforming growth factor, beta 2
hg19_v2_chr1_-_23495340_23495357	0.0104445	UUGGUCC	ENST00000418342.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr7_+_114055052_114055378	0.0103617	UUGGUCC	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr2_+_209130965_209131031	0.0103394	UUGGUCC	ENST00000392202.3|PIKFYVE|ENSG00000115020.12|phosphoinositide kinase, FYVE finger containing 	ENST00000264380.4|PIKFYVE|ENSG00000115020.12|phosphoinositide kinase, FYVE finger containing 	ENST00000407449.1|PIKFYVE|ENSG00000115020.12|phosphoinositide kinase, FYVE finger containing 	ENST00000308862.6|PIKFYVE|ENSG00000115020.12|phosphoinositide kinase, FYVE finger containing
hg19_v2_chr22_+_25202232_25202286	0.0102717	UUGGUCC	ENST00000400358.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1 	ENST00000400359.4|SGSM1|ENSG00000167037.14|small G protein signaling modulator 1
hg19_v2_chr17_-_56595196_56595266	0.0101033	UUGGUCC	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr10_-_115613828_115613859	0.009456	UUGGUCC	ENST00000361384.2|DCLRE1A|ENSG00000198924.3|DNA cross-link repair 1A
hg19_v2_chr1_+_87380299_87380475	0.00944184	UUGGUCC	ENST00000370551.4|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1 	ENST00000370550.5|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1
hg19_v2_chr10_-_100027943_100028007	0.00943819	UUGGUCC	ENST00000260702.3|LOXL4|ENSG00000138131.3|lysyl oxidase-like 4
hg19_v2_chr15_-_48937982_48938046	0.00936891	UUGGUCC	ENST00000316623.5|FBN1|ENSG00000166147.9|fibrillin 1
hg19_v2_chr6_+_1610681_1610681	0.00933016	UUGGUCC	ENST00000380874.2|FOXC1|ENSG00000054598.5|forkhead box C1
hg19_v2_chr11_-_47870019_47870033	0.00930191	UUGGUCC	ENST00000378460.2|NUP160|ENSG00000030066.9|nucleoporin 160kDa
hg19_v2_chr3_-_107809816_107809885	0.00900746	UUGGUCC	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr1_+_92764522_92764628	0.00884328	UUGGUCC	ENST00000610020.1|RPAP2|ENSG00000122484.8|RNA polymerase II associated protein 2
hg19_v2_chr17_-_1359443_1359553	0.00864106	UUGGUCC	ENST00000574295.1|CRK|ENSG00000167193.7|v-crk avian sarcoma virus CT10 oncogene homolog 	ENST00000398970.5|CRK|ENSG00000167193.7|v-crk avian sarcoma virus CT10 oncogene homolog 	ENST00000300574.2|CRK|ENSG00000167193.7|v-crk avian sarcoma virus CT10 oncogene homolog
hg19_v2_chr9_+_36190853_36190904	0.0084489	UUGGUCC	ENST00000433436.2|CLTA|ENSG00000122705.12|clathrin, light chain A 	ENST00000538225.1|CLTA|ENSG00000122705.12|clathrin, light chain A 	ENST00000540080.1|CLTA|ENSG00000122705.12|clathrin, light chain A
hg19_v2_chr16_-_30457048_30457224	0.00842416	UUGGUCC	ENST00000500504.2|SEPHS2|ENSG00000179918.15|selenophosphate synthetase 2 	ENST00000542752.1|SEPHS2|ENSG00000179918.15|selenophosphate synthetase 2
hg19_v2_chr17_+_7788104_7788138	0.00795517	UUGGUCC	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chrX_-_140271249_140271333	0.00792748	UUGGUCC	ENST00000370526.2|LDOC1|ENSG00000182195.6|leucine zipper, down-regulated in cancer 1
hg19_v2_chr3_+_5229356_5229367	0.00779235	UUGGUCC	ENST00000256497.4|EDEM1|ENSG00000134109.6|ER degradation enhancer, mannosidase alpha-like 1
hg19_v2_chr17_+_16593539_16593639	0.00726191	UUGGUCC	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr14_-_55369525_55369570	0.00725707	UUGGUCC	ENST00000543643.2|GCH1|ENSG00000131979.14|GTP cyclohydrolase 1 	ENST00000536224.2|GCH1|ENSG00000131979.14|GTP cyclohydrolase 1 	ENST00000395514.1|GCH1|ENSG00000131979.14|GTP cyclohydrolase 1 	ENST00000491895.2|GCH1|ENSG00000131979.14|GTP cyclohydrolase 1
hg19_v2_chr2_+_239335449_239335465	0.00697159	UUGGUCC	ENST00000264607.4|ASB1|ENSG00000065802.7|ankyrin repeat and SOCS box containing 1
hg19_v2_chr1_+_25757376_25757411	0.00635852	UUGGUCC	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr1_+_52870227_52870243	0.00627202	UUGGUCC	ENST00000257181.9|PRPF38A|ENSG00000134748.12|pre-mRNA processing factor 38A
hg19_v2_chr12_+_58166431_58166461	0.00590431	UUGGUCC	ENST00000333012.5|METTL21B|ENSG00000123427.11|methyltransferase like 21B
hg19_v2_chr1_-_155532484_155532605	0.00587216	UUGGUCC	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chrX_-_135962876_135962896	0.00569656	UUGGUCC	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr17_-_40306934_40307035	0.00563551	UUGGUCC	ENST00000592574.1|CTD-2132N18.3|ENSG00000267261.1|Uncharacterized protein  	ENST00000550406.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000547517.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000393860.3|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000346213.4|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family
hg19_v2_chr1_+_97187318_97187380	0.00563286	UUGGUCC	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr6_+_160183492_160183523	0.00552848	UUGGUCC	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr3_-_45267760_45267826	0.00548548	UUGGUCC	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr10_+_6186847_6186921	0.00545782	UUGGUCC	ENST00000536985.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379789.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr8_-_72268889_72268955	0.00533406	UUGGUCC	ENST00000388742.4|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr1_+_201979645_201979721	0.00518649	UUGGUCC	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr17_+_42081914_42082125	0.00503854	UUGGUCC	ENST00000293404.3|NAGS|ENSG00000161653.6|N-acetylglutamate synthase 	ENST00000589767.1|NAGS|ENSG00000161653.6|N-acetylglutamate synthase
hg19_v2_chr7_+_55086794_55086811	0.00499712	UUGGUCC	ENST00000275493.2|EGFR|ENSG00000146648.11|epidermal growth factor receptor 	ENST00000442591.1|EGFR|ENSG00000146648.11|epidermal growth factor receptor
hg19_v2_chr5_-_73937244_73937274	0.00495509	UUGGUCC	ENST00000302351.4|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000510316.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000508331.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain)
hg19_v2_chr6_-_52926539_52926668	0.00487981	UUGGUCC	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr1_-_24306798_24306828	0.00479797	UUGGUCC	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chr8_-_28243934_28243993	0.0045594	UUGGUCC	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chrX_+_53078273_53078273	0.00454428	UUGGUCC	ENST00000332582.4|GPR173|ENSG00000184194.5|G protein-coupled receptor 173
hg19_v2_chr12_+_10365404_10365547	0.00440834	UUGGUCC	ENST00000266458.5|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000421801.2|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000544284.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545047.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000543602.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545887.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1
hg19_v2_chr5_-_133561752_133561833	0.00438887	UUGGUCC	ENST00000519718.1|CTD-2410N18.5|ENSG00000272772.1|S-phase kinase-associated protein 1  	ENST00000481195.1|PPP2CA|ENSG00000113575.5|protein phosphatase 2, catalytic subunit, alpha isozyme
hg19_v2_chr2_-_85555385_85555548	0.00429066	UUGGUCC	ENST00000377386.3|TGOLN2|ENSG00000152291.9|trans-golgi network protein 2
hg19_v2_chr11_+_12695944_12695989	0.00412541	UUGGUCC	ENST00000361905.4|TEAD1|ENSG00000187079.10|TEA domain family member 1 (SV40 transcriptional enhancer factor)
hg19_v2_chr1_-_150552006_150552093	0.00398987	UUGGUCC	ENST00000307940.3|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related) 	ENST00000369026.2|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related)
hg19_v2_chr16_-_66584059_66584315	0.00384311	UUGGUCC	ENST00000417693.3|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000544898.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000569718.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000527284.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000299697.7|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000451102.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr8_-_81083731_81083813	0.00318258	UUGGUCC	ENST00000379096.5|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr20_+_56964169_56964182	0.00300672	UUGGUCC	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr4_+_1283639_1283705	0.0030036	UUGGUCC	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chr17_-_42345487_42345514	0.00267567	UUGGUCC	ENST00000262418.6|SLC4A1|ENSG00000004939.9|solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
hg19_v2_chr5_+_141303373_141303421	0.00253642	UUGGUCC	ENST00000432126.2|KIAA0141|ENSG00000081791.4|KIAA0141 	ENST00000194118.4|KIAA0141|ENSG00000081791.4|KIAA0141
hg19_v2_chr17_-_35969409_35969544	0.00246482	UUGGUCC	ENST00000394378.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585472.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000591288.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000502449.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000345615.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000346661.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585689.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000339208.6|SYNRG|ENSG00000006114.11|synergin, gamma
hg19_v2_chr16_-_66785699_66785759	0.00236822	UUGGUCC	ENST00000258198.2|DYNC1LI2|ENSG00000135720.8|dynein, cytoplasmic 1, light intermediate chain 2
hg19_v2_chr20_-_47444420_47444526	0.0023404	UUGGUCC	ENST00000371941.3|PREX1|ENSG00000124126.9|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 	ENST00000396220.1|PREX1|ENSG00000124126.9|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
hg19_v2_chr6_-_166075557_166075588	0.00221647	UUGGUCC	ENST00000539869.2|PDE10A|ENSG00000112541.9|phosphodiesterase 10A 	ENST00000366882.1|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr8_+_29952914_29953016	0.00173008	UUGGUCC	ENST00000321250.8|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000518001.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000520682.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000442880.2|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1 	ENST00000523116.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr12_-_82153087_82153138	0.00169244	UUGGUCC	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr1_-_205782304_205782332	0.00166503	UUGGUCC	ENST00000367137.3|SLC41A1|ENSG00000133065.6|solute carrier family 41 (magnesium transporter), member 1
hg19_v2_chr3_-_52931557_52931623	0.00156099	UUGGUCC	ENST00000504329.1|TMEM110-MUSTN1|ENSG00000248592.3|TMEM110-MUSTN1 readthrough 	ENST00000355083.5|TMEM110|ENSG00000213533.7|transmembrane protein 110
hg19_v2_chr11_-_62599505_62599560	0.00127674	UUGGUCC	ENST00000377897.4|STX5|ENSG00000162236.7|syntaxin 5 	ENST00000394690.1|STX5|ENSG00000162236.7|syntaxin 5 	ENST00000541317.1|STX5|ENSG00000162236.7|syntaxin 5 	ENST00000294179.3|STX5|ENSG00000162236.7|syntaxin 5
hg19_v2_chr7_+_43152191_43152211	0.0012145	UUGGUCC	ENST00000395891.2|HECW1|ENSG00000002746.10|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr10_+_101419187_101419313	0.000884239	UUGGUCC	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr11_+_66610883_66610931	0.000636038	UUGGUCC	ENST00000309657.3|RCE1|ENSG00000173653.3|Ras converting CAAX endopeptidase 1 	ENST00000524506.1|RCE1|ENSG00000173653.3|Ras converting CAAX endopeptidase 1
hg19_v2_chr17_+_38296576_38296604	0.000609615	UUGGUCC	ENST00000264645.7|CASC3|ENSG00000108349.10|cancer susceptibility candidate 3
hg19_v2_chr3_+_99357319_99357454	0.000330043	UUGGUCC	ENST00000452013.1|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000261037.3|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1 	ENST00000273342.4|COL8A1|ENSG00000144810.11|collagen, type VIII, alpha 1
hg19_v2_chr2_-_204400113_204400149	0.000233011	UUGGUCC	ENST00000319170.5|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
