hg19_v2_chrX_+_119737806_119737835	0.011539	UGACCUA	ENST00000371317.5|MCTS1|ENSG00000232119.3|malignant T cell amplified sequence 1
hg19_v2_chr3_-_123603137_123603203	0.00851602	UGACCUA	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_+_179262905_179262986	0.00680795	UGACCUA	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr1_+_101702417_101702481	0.00584433	UGACCUA	ENST00000305352.6|S1PR1|ENSG00000170989.8|sphingosine-1-phosphate receptor 1
hg19_v2_chr1_+_28995231_28995250	0.00574381	UGACCUA	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr2_-_235405679_235405739	0.00540376	UGACCUA	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr14_+_57735614_57735629	0.00518741	UGACCUA	ENST00000261558.3|AP5M1|ENSG00000053770.7|adaptor-related protein complex 5, mu 1 subunit
hg19_v2_chr3_-_9291063_9291136	0.00507216	UGACCUA	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr5_+_42756903_42756963	0.00463545	UGACCUA	ENST00000361970.5|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152 	ENST00000388827.4|CCDC152|ENSG00000198865.5|coiled-coil domain containing 152
hg19_v2_chr1_+_62902308_62902335	0.00460119	UGACCUA	ENST00000339950.4|USP1|ENSG00000162607.8|ubiquitin specific peptidase 1
hg19_v2_chr5_-_73937244_73937274	0.00431232	UGACCUA	ENST00000302351.4|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000510316.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain) 	ENST00000508331.1|ENC1|ENSG00000171617.9|ectodermal-neural cortex 1 (with BTB domain)
hg19_v2_chr12_+_85673868_85673885	0.00387352	UGACCUA	ENST00000316824.3|ALX1|ENSG00000180318.3|ALX homeobox 1
hg19_v2_chr3_-_42846021_42846032	0.00377288	UGACCUA	ENST00000321331.7|HIGD1A|ENSG00000181061.9|HIG1 hypoxia inducible domain family, member 1A
hg19_v2_chr7_+_77469439_77469497	0.00366791	UGACCUA	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr3_+_105085734_105085760	0.00365561	UGACCUA	ENST00000306107.5|ALCAM|ENSG00000170017.8|activated leukocyte cell adhesion molecule
hg19_v2_chr3_-_113465065_113465147	0.0035948	UGACCUA	ENST00000497255.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000478020.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000240922.3|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000493900.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit
hg19_v2_chr12_+_88536067_88536100	0.00353885	UGACCUA	ENST00000549011.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000266712.6|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000551088.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3
hg19_v2_chr10_+_70661014_70661090	0.00350721	UGACCUA	ENST00000373585.3|DDX50|ENSG00000107625.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
hg19_v2_chr12_+_52203789_52203789	0.00324623	UGACCUA	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr8_+_48920960_48921011	0.00297521	UGACCUA	ENST00000523111.2|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000523432.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000521346.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000517630.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2
hg19_v2_chr15_+_89631381_89631391	0.00297505	UGACCUA	ENST00000352732.5|ABHD2|ENSG00000140526.12|abhydrolase domain containing 2
hg19_v2_chr1_-_9970227_9970356	0.00283928	UGACCUA	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr16_+_67596310_67596353	0.00283639	UGACCUA	ENST00000264010.4|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein) 	ENST00000401394.1|CTCF|ENSG00000102974.10|CCCTC-binding factor (zinc finger protein)
hg19_v2_chr15_-_50978965_50979012	0.00267455	UGACCUA	ENST00000560955.1|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7 	ENST00000313478.7|TRPM7|ENSG00000092439.9|transient receptor potential cation channel, subfamily M, member 7
hg19_v2_chr20_+_46130601_46130613	0.00265528	UGACCUA	ENST00000341724.6|NCOA3|ENSG00000124151.14|nuclear receptor coactivator 3
hg19_v2_chr13_-_21476900_21476949	0.00249458	UGACCUA	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr2_+_26915584_26915634	0.00248878	UGACCUA	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr1_+_179851410_179851447	0.00237868	UGACCUA	ENST00000271583.3|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1 	ENST00000606911.2|TOR1AIP1|ENSG00000143337.14|torsin A interacting protein 1
hg19_v2_chr16_+_69599861_69599887	0.00230944	UGACCUA	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr9_-_127533519_127533576	0.00223461	UGACCUA	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr17_-_56595196_56595266	0.00203313	UGACCUA	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr10_+_73975742_73975830	0.00188294	UGACCUA	ENST00000299381.4|ANAPC16|ENSG00000166295.4|anaphase promoting complex subunit 16
hg19_v2_chr3_+_101292939_101293063	0.00162493	UGACCUA	ENST00000265260.3|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000469941.1|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000296024.5|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein
hg19_v2_chrX_+_95939711_95939786	0.0015732	UGACCUA	ENST00000373049.4|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2 	ENST00000324765.8|DIAPH2|ENSG00000147202.13|diaphanous-related formin 2
hg19_v2_chr6_-_42419649_42419789	0.0015589	UGACCUA	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chrX_-_63425561_63425624	0.00153744	UGACCUA	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr4_+_184020398_184020463	0.00150546	UGACCUA	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr18_-_33709268_33709380	0.00147419	UGACCUA	ENST00000269187.5|SLC39A6|ENSG00000141424.8|solute carrier family 39 (zinc transporter), member 6 	ENST00000590986.1|SLC39A6|ENSG00000141424.8|solute carrier family 39 (zinc transporter), member 6 	ENST00000440549.2|SLC39A6|ENSG00000141424.8|solute carrier family 39 (zinc transporter), member 6
hg19_v2_chr1_+_84543734_84543775	0.00144979	UGACCUA	ENST00000370689.2|PRKACB|ENSG00000142875.15|protein kinase, cAMP-dependent, catalytic, beta
hg19_v2_chr12_+_862089_862343	0.00135423	UGACCUA	ENST00000315939.6|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000537687.1|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1 	ENST00000447667.2|WNK1|ENSG00000060237.12|WNK lysine deficient protein kinase 1
hg19_v2_chr6_-_116381918_116381977	0.00131516	UGACCUA	ENST00000606080.1|FRK|ENSG00000111816.6|fyn-related kinase
hg19_v2_chr9_+_137533615_137533660	0.00129123	UGACCUA	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr1_-_100715372_100715400	0.00126826	UGACCUA	ENST00000370131.3|DBT|ENSG00000137992.10|dihydrolipoamide branched chain transacylase E2 	ENST00000370132.4|DBT|ENSG00000137992.10|dihydrolipoamide branched chain transacylase E2
hg19_v2_chr2_+_109204909_109204928	0.00116053	UGACCUA	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr2_-_26101374_26101389	0.00114948	UGACCUA	ENST00000435504.4|ASXL2|ENSG00000143970.12|additional sex combs like 2 (Drosophila)
hg19_v2_chr20_-_58515344_58515366	0.00112824	UGACCUA	ENST00000370996.3|PPP1R3D|ENSG00000132825.5|protein phosphatase 1, regulatory subunit 3D
hg19_v2_chr10_-_99052382_99052413	0.00111339	UGACCUA	ENST00000453547.2|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000466484.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000316676.8|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358308.3|ARHGAP19-SLIT1|ENSG00000269891.1|ARHGAP19-SLIT1 readthrough (NMD candidate) 	ENST00000358531.4|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr1_+_10271674_10271674	0.00110728	UGACCUA	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr17_+_38024417_38024478	0.00108109	UGACCUA	ENST00000348931.4|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000583811.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000584588.1|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2 	ENST00000377940.3|ZPBP2|ENSG00000186075.8|zona pellucida binding protein 2
hg19_v2_chr11_-_64684672_64684722	0.00106208	UGACCUA	ENST00000377264.3|ATG2A|ENSG00000110046.8|autophagy related 2A 	ENST00000421419.2|ATG2A|ENSG00000110046.8|autophagy related 2A
hg19_v2_chr17_-_8279977_8280032	0.00105752	UGACCUA	ENST00000396267.1|KRBA2|ENSG00000184619.3|KRAB-A domain containing 2
hg19_v2_chr20_-_36156125_36156250	0.00103848	UGACCUA	ENST00000397135.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000397137.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr14_+_73704201_73704277	0.00101935	UGACCUA	ENST00000340738.5|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000427855.1|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein 	ENST00000381166.3|PAPLN|ENSG00000100767.11|papilin, proteoglycan-like sulfated glycoprotein
hg19_v2_chr5_+_36876833_36876894	0.000971304	UGACCUA	ENST00000282516.8|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila) 	ENST00000448238.2|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila)
hg19_v2_chr8_+_110346546_110346619	0.000910914	UGACCUA	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr20_+_42086525_42086568	0.00070901	UGACCUA	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr10_-_79686284_79686527	0.000708935	UGACCUA	ENST00000372391.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila) 	ENST00000372388.2|DLG5|ENSG00000151208.12|discs, large homolog 5 (Drosophila)
hg19_v2_chr4_+_172734548_172734654	0.000579546	UGACCUA	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr6_+_39016551_39016574	0.000516373	UGACCUA	ENST00000373256.4|GLP1R|ENSG00000112164.5|glucagon-like peptide 1 receptor
hg19_v2_chr11_+_35684288_35684353	0.000494195	UGACCUA	ENST00000299413.5|TRIM44|ENSG00000166326.5|tripartite motif containing 44
hg19_v2_chr17_+_2699697_2699776	0.000444344	UGACCUA	ENST00000254695.8|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000366401.4|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2 	ENST00000542807.1|RAP1GAP2|ENSG00000132359.9|RAP1 GTPase activating protein 2
hg19_v2_chr11_+_118754475_118754552	0.000399921	UGACCUA	ENST00000292174.4|CXCR5|ENSG00000160683.4|chemokine (C-X-C motif) receptor 5
hg19_v2_chr17_+_27717415_27717618	0.000297519	UGACCUA	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr8_+_42010464_42010662	0.000293476	UGACCUA	ENST00000518421.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000174653.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000396926.3|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000521280.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit 	ENST00000522288.1|AP3M2|ENSG00000070718.7|adaptor-related protein complex 3, mu 2 subunit
hg19_v2_chr1_+_151043070_151043110	0.000225385	UGACCUA	ENST00000368918.3|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2 	ENST00000368917.1|GABPB2|ENSG00000143458.7|GA binding protein transcription factor, beta subunit 2
hg19_v2_chr3_+_38495333_38495422	0.000208397	UGACCUA	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr17_+_39845134_39845145	0.000201785	UGACCUA	ENST00000591776.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1 	ENST00000469257.1|EIF1|ENSG00000173812.6|eukaryotic translation initiation factor 1
hg19_v2_chr21_-_36260980_36261011	0.000176226	UGACCUA	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr3_+_11314099_11314122	0.000164135	UGACCUA	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr5_+_173315283_173315335	0.000137129	UGACCUA	ENST00000265085.5|CPEB4|ENSG00000113742.8|cytoplasmic polyadenylation element binding protein 4
hg19_v2_chr3_-_160283348_160283376	0.000116563	UGACCUA	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr11_+_119076745_119076792	0.000108582	UGACCUA	ENST00000264033.4|CBL|ENSG00000110395.4|Cbl proto-oncogene, E3 ubiquitin protein ligase
hg19_v2_chrX_-_24045303_24045303	7.0909e-05	UGACCUA	ENST00000328046.8|KLHL15|ENSG00000174010.9|kelch-like family member 15
hg19_v2_chr1_+_63833261_63833282	6.82765e-05	UGACCUA	ENST00000371108.4|ALG6|ENSG00000088035.11|ALG6, alpha-1,3-glucosyltransferase
