hg19_v2_chr6_-_108278456_108278544	0.817572	SOX3_SOX2	ENST00000429168.1|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr3_-_4927447_4927479	0.766922	SOX3_SOX2	ENST00000449914.1|AC018816.3|ENSG00000235978.2|Uncharacterized protein
hg19_v2_chr14_-_51027838_51027851	0.763143	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr12_-_58145889_58145914	0.612133	SOX3_SOX2	ENST00000547853.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4
hg19_v2_chr16_+_30934376_30934392	0.599082	SOX3_SOX2	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr1_-_2461684_2461710	0.568961	SOX3_SOX2	ENST00000378453.3|HES5|ENSG00000197921.5|hes family bHLH transcription factor 5
hg19_v2_chr11_-_114271139_114271247	0.56692	SOX3_SOX2	ENST00000325636.4|C11orf71|ENSG00000180425.7|chromosome 11 open reading frame 71
hg19_v2_chr21_+_30671690_30671762	0.56177	SOX3_SOX2	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr1_-_226065330_226065386	0.561282	SOX3_SOX2	ENST00000436966.1|TMEM63A|ENSG00000196187.7|transmembrane protein 63A
hg19_v2_chr2_-_37501692_37501747	0.558479	SOX3_SOX2	ENST00000443977.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr1_+_200993071_200993094	0.532601	SOX3_SOX2	ENST00000446333.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1	ENST00000458003.1|RP11-168O16.1|ENSG00000229191.1|RP11-168O16.1
hg19_v2_chr14_+_100070869_100070893	0.498239	SOX3_SOX2	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr20_+_58571419_58571449	0.491933	SOX3_SOX2	ENST00000244049.3|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000350849.6|CDH26|ENSG00000124215.12|cadherin 26 	ENST00000456106.1|CDH26|ENSG00000124215.12|cadherin 26
hg19_v2_chr14_-_23791484_23791484	0.484903	SOX3_SOX2	ENST00000594872.1|AL049829.1|ENSG00000268702.1|Uncharacterized protein
hg19_v2_chr2_+_219283815_219283853	0.483776	SOX3_SOX2	ENST00000248444.5|VIL1|ENSG00000127831.6|villin 1 	ENST00000454069.1|VIL1|ENSG00000127831.6|villin 1 	ENST00000392114.2|VIL1|ENSG00000127831.6|villin 1
hg19_v2_chr9_+_91003271_91003386	0.483748	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr9_-_117160738_117160783	0.474074	SOX3_SOX2	ENST00000448674.1|RP11-9M16.2|ENSG00000235119.1|RP11-9M16.2
hg19_v2_chrX_+_9433289_9433334	0.468897	SOX3_SOX2	ENST00000422314.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr4_+_95128996_95129056	0.456978	SOX3_SOX2	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr12_-_2966193_2966213	0.43998	SOX3_SOX2	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr11_-_133715394_133715433	0.439918	SOX3_SOX2	ENST00000299140.3|SPATA19|ENSG00000166118.3|spermatogenesis associated 19 	ENST00000532889.1|SPATA19|ENSG00000166118.3|spermatogenesis associated 19
hg19_v2_chr19_-_38720294_38720348	0.439656	SOX3_SOX2	ENST00000412732.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1 	ENST00000456296.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr8_+_94752349_94752349	0.437993	SOX3_SOX2	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr3_+_44626446_44626477	0.436026	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr19_+_10765614_10765687	0.432073	SOX3_SOX2	ENST00000589283.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr1_+_228337553_228337602	0.431709	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr3_+_183353356_183353450	0.428528	SOX3_SOX2	ENST00000242810.6|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000493074.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000437402.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454495.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000473045.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000468101.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000427201.2|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000482138.1|KLHL24|ENSG00000114796.11|kelch-like family member 24 	ENST00000454652.2|KLHL24|ENSG00000114796.11|kelch-like family member 24
hg19_v2_chr8_-_80993010_80993073	0.428447	SOX3_SOX2	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr15_+_93426514_93426562	0.427421	SOX3_SOX2	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr3_-_171489085_171489158	0.421661	SOX3_SOX2	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr17_+_7608511_7608538	0.418935	SOX3_SOX2	ENST00000226091.2|EFNB3|ENSG00000108947.4|ephrin-B3
hg19_v2_chr2_-_55276320_55276334	0.414189	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr4_+_95129061_95129198	0.411501	SOX3_SOX2	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr16_+_53242350_53242398	0.410022	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr19_-_23433144_23433204	0.403779	SOX3_SOX2	ENST00000418100.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597537.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene 	ENST00000597037.1|ZNF724P|ENSG00000196081.5|zinc finger protein 724, pseudogene
hg19_v2_chr6_+_64282447_64282586	0.40319	SOX3_SOX2	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr6_-_107436473_107436543	0.401948	SOX3_SOX2	ENST00000369042.1|BEND3|ENSG00000178409.9|BEN domain containing 3
hg19_v2_chr5_-_65018834_65018863	0.39883	SOX3_SOX2	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr2_-_37899323_37899374	0.397237	SOX3_SOX2	ENST00000295324.3|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3 	ENST00000457889.1|CDC42EP3|ENSG00000163171.6|CDC42 effector protein (Rho GTPase binding) 3
hg19_v2_chr19_+_10765699_10765728	0.395952	SOX3_SOX2	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr19_-_57967854_57967854	0.392988	SOX3_SOX2	ENST00000321039.3|VN1R1|ENSG00000178201.3|vomeronasal 1 receptor 1
hg19_v2_chr2_-_165697717_165697784	0.388749	SOX3_SOX2	ENST00000439313.1|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1
hg19_v2_chr1_+_40915725_40915808	0.383946	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr4_+_95128748_95128794	0.383836	SOX3_SOX2	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr16_+_3254247_3254247	0.383483	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr10_+_18948311_18948417	0.379404	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chrX_-_154376044_154376055	0.369546	SOX3_SOX2	ENST00000362018.2|MTCP1|ENSG00000214827.5|mature T-cell proliferation 1
hg19_v2_chr7_+_102553430_102553456	0.366829	SOX3_SOX2	ENST00000339431.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17 	ENST00000249377.4|LRRC17|ENSG00000128606.8|leucine rich repeat containing 17
hg19_v2_chr1_+_25071848_25071944	0.360619	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr18_-_59415987_59416065	0.354482	SOX3_SOX2	ENST00000590199.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1	ENST00000590968.1|RP11-879F14.1|ENSG00000267175.1|RP11-879F14.1
hg19_v2_chr7_-_22233442_22233527	0.353937	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr20_+_55099542_55099542	0.352391	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr7_-_32931623_32931756	0.348703	SOX3_SOX2	ENST00000452926.1|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr11_-_76155700_76155736	0.346824	SOX3_SOX2	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr6_+_151358048_151358110	0.34379	SOX3_SOX2	ENST00000450635.1|MTHFD1L|ENSG00000120254.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
hg19_v2_chr6_-_86353510_86353595	0.342243	SOX3_SOX2	ENST00000444272.1|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr1_+_9005917_9005946	0.341883	SOX3_SOX2	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr1_+_145727681_145727725	0.339568	SOX3_SOX2	ENST00000417171.1|PDZK1|ENSG00000174827.9|PDZ domain containing 1 	ENST00000451928.2|PDZK1|ENSG00000174827.9|PDZ domain containing 1
hg19_v2_chr3_+_44626359_44626387	0.336179	SOX3_SOX2	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr12_+_65996599_65996667	0.335744	SOX3_SOX2	ENST00000539116.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3	ENST00000541391.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3
hg19_v2_chr1_-_204436344_204436474	0.330448	SOX3_SOX2	ENST00000367184.2|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr16_+_24550857_24550878	0.330435	SOX3_SOX2	ENST00000568015.1|RBBP6|ENSG00000122257.14|retinoblastoma binding protein 6
hg19_v2_chr1_-_226496772_226496884	0.330058	SOX3_SOX2	ENST00000359525.2|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans) 	ENST00000460719.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr6_+_35704804_35704813	0.32978	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr10_-_32217717_32217781	0.329206	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr4_-_80993717_80993850	0.325192	SOX3_SOX2	ENST00000307333.7|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr1_+_235490659_235490670	0.324628	SOX3_SOX2	ENST00000488594.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr2_-_107503558_107503580	0.319653	SOX3_SOX2	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr19_-_10047219_10047235	0.319642	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr6_+_144606817_144606837	0.316834	SOX3_SOX2	ENST00000433557.1|UTRN|ENSG00000152818.14|utrophin
hg19_v2_chrX_-_128788914_128788942	0.313011	SOX3_SOX2	ENST00000429967.1|APLN|ENSG00000171388.9|apelin 	ENST00000307484.6|APLN|ENSG00000171388.9|apelin
hg19_v2_chr12_-_12419905_12419989	0.310426	SOX3_SOX2	ENST00000535731.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr7_+_77167343_77167369	0.309765	SOX3_SOX2	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr14_+_58862630_58862662	0.308896	SOX3_SOX2	ENST00000360945.2|TOMM20L|ENSG00000196860.3|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
hg19_v2_chr10_-_14646388_14646417	0.308694	SOX3_SOX2	ENST00000468747.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378467.4|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr2_+_149402989_149402989	0.308332	SOX3_SOX2	ENST00000397424.2|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr21_-_27945562_27945618	0.308073	SOX3_SOX2	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr4_-_80994210_80994284	0.307419	SOX3_SOX2	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr11_-_85430088_85430151	0.306057	SOX3_SOX2	ENST00000533057.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533892.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr12_-_49075941_49076001	0.305968	SOX3_SOX2	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr17_+_76037081_76037128	0.301648	SOX3_SOX2	ENST00000588549.1|TNRC6C|ENSG00000078687.12|trinucleotide repeat containing 6C
hg19_v2_chr2_-_99485825_99485855	0.301227	SOX3_SOX2	ENST00000423771.1|KIAA1211L|ENSG00000196872.6|KIAA1211-like
hg19_v2_chr3_-_79068138_79068214	0.300463	SOX3_SOX2	ENST00000495273.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr6_+_114178512_114178586	0.298819	SOX3_SOX2	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr8_+_9009296_9009313	0.298724	SOX3_SOX2	ENST00000521718.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr17_-_26926005_26926070	0.29852	SOX3_SOX2	ENST00000536674.2|SPAG5|ENSG00000076382.12|sperm associated antigen 5
hg19_v2_chr9_-_123476612_123476698	0.296051	SOX3_SOX2	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr3_+_182983126_182983135	0.2958	SOX3_SOX2	ENST00000481531.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chrX_+_78003204_78003248	0.295122	SOX3_SOX2	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr7_-_105925558_105925638	0.291153	SOX3_SOX2	ENST00000222553.3|NAMPT|ENSG00000105835.7|nicotinamide phosphoribosyltransferase
hg19_v2_chr5_+_36606700_36606729	0.291039	SOX3_SOX2	ENST00000416645.2|SLC1A3|ENSG00000079215.9|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v2_chr9_+_67968793_67968793	0.290661	SOX3_SOX2	ENST00000417488.1|RP11-195B21.3|ENSG00000155282.7|Protein LOC644249
hg19_v2_chr1_+_235491714_235491895	0.288966	SOX3_SOX2	ENST00000471812.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000358966.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000282841.5|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000391855.2|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr7_-_143579973_143579998	0.287736	SOX3_SOX2	ENST00000460532.1|FAM115A|ENSG00000198420.5|family with sequence similarity 115, member A 	ENST00000491908.1|FAM115A|ENSG00000198420.5|family with sequence similarity 115, member A
hg19_v2_chr8_-_125827922_125827927	0.287343	SOX3_SOX2	ENST00000533516.1|RP11-1082L8.4|ENSG00000255491.1|RP11-1082L8.4
hg19_v2_chrX_+_119384607_119384720	0.286598	SOX3_SOX2	ENST00000326624.2|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33 	ENST00000557385.1|ZBTB33|ENSG00000177485.6|zinc finger and BTB domain containing 33
hg19_v2_chr1_-_157108266_157108347	0.284865	SOX3_SOX2	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr2_+_46926326_46926452	0.284273	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr3_-_149510553_149510610	0.282316	SOX3_SOX2	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chr5_-_89825328_89825422	0.281903	SOX3_SOX2	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr12_-_62997214_62997214	0.279946	SOX3_SOX2	ENST00000408887.2|C12orf61|ENSG00000221949.2|chromosome 12 open reading frame 61
hg19_v2_chr19_-_38720354_38720369	0.279342	SOX3_SOX2	ENST00000416611.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr8_-_49533521_49533578	0.278375	SOX3_SOX2	ENST00000523038.1|RP11-567J20.1|ENSG00000253702.1|RP11-567J20.1
hg19_v2_chr5_-_146833803_146833829	0.277748	SOX3_SOX2	ENST00000512722.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr17_+_37809333_37809378	0.277061	SOX3_SOX2	ENST00000443521.1|STARD3|ENSG00000131748.11|StAR-related lipid transfer (START) domain containing 3
hg19_v2_chr22_-_32555275_32555296	0.276045	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr4_-_157892055_157892128	0.275321	SOX3_SOX2	ENST00000422544.2|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr7_-_6388389_6388531	0.27508	SOX3_SOX2	ENST00000578372.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr6_+_35704855_35704874	0.274908	SOX3_SOX2	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr1_+_212797789_212797818	0.274282	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chrX_-_15872914_15873054	0.274041	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr6_+_56911476_56911524	0.271434	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr6_-_139613269_139613280	0.270032	SOX3_SOX2	ENST00000358430.3|TXLNB|ENSG00000164440.10|taxilin beta
hg19_v2_chr1_+_35734616_35734642	0.269611	SOX3_SOX2	ENST00000441447.1|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr1_-_205391178_205391214	0.269067	SOX3_SOX2	ENST00000367153.4|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367151.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000391936.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367149.3|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chr19_+_37960466_37960478	0.266555	SOX3_SOX2	ENST00000589725.1|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr1_+_227751281_227751298	0.264362	SOX3_SOX2	ENST00000440339.1|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr12_+_69979210_69979252	0.26434	SOX3_SOX2	ENST00000544368.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr4_+_95679072_95679125	0.262436	SOX3_SOX2	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr5_+_133707252_133707295	0.260078	SOX3_SOX2	ENST00000506787.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B 	ENST00000507277.1|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr2_-_160472052_160472083	0.25935	SOX3_SOX2	ENST00000437839.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr1_+_178482262_178482279	0.25611	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr8_+_103876528_103876594	0.25397	SOX3_SOX2	ENST00000522939.1|KB-1507C5.2|ENSG00000253320.1|HCG15011, isoform CRA_a; Protein LOC100996457  	ENST00000524007.1|KB-1507C5.2|ENSG00000253320.1|HCG15011, isoform CRA_a; Protein LOC100996457
hg19_v2_chr12_+_8849773_8849912	0.253927	SOX3_SOX2	ENST00000541044.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B
hg19_v2_chr10_-_70092671_70092806	0.252917	SOX3_SOX2	ENST00000358769.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000432941.1|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing 	ENST00000495025.2|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr5_-_65017921_65017968	0.252832	SOX3_SOX2	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr15_+_77224045_77224121	0.251767	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chrX_+_12993336_12993363	0.250837	SOX3_SOX2	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr1_-_26232951_26232959	0.250467	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr6_+_89790459_89790479	0.249981	SOX3_SOX2	ENST00000369472.1|PNRC1|ENSG00000146278.10|proline-rich nuclear receptor coactivator 1
hg19_v2_chr7_+_111846741_111846776	0.249773	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr16_-_22385901_22385947	0.249498	SOX3_SOX2	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr15_+_52311398_52311461	0.247258	SOX3_SOX2	ENST00000261845.5|MAPK6|ENSG00000069956.7|mitogen-activated protein kinase 6
hg19_v2_chr4_+_78078304_78078406	0.245504	SOX3_SOX2	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr10_+_115999089_115999141	0.243966	SOX3_SOX2	ENST00000392982.3|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr14_+_57857262_57857334	0.243085	SOX3_SOX2	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr3_-_11623804_11623865	0.242091	SOX3_SOX2	ENST00000451674.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr3_-_129513259_129513392	0.241344	SOX3_SOX2	ENST00000329333.5|TMCC1|ENSG00000172765.12|transmembrane and coiled-coil domain family 1
hg19_v2_chr16_-_11367452_11367491	0.240872	SOX3_SOX2	ENST00000327157.2|PRM3|ENSG00000178257.2|protamine 3
hg19_v2_chr5_-_16936340_16936418	0.240462	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr6_-_134861089_134861168	0.240073	SOX3_SOX2	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr7_+_23146271_23146285	0.239741	SOX3_SOX2	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr2_-_25451065_25451090	0.238996	SOX3_SOX2	ENST00000606328.1|RP11-458N5.1|ENSG00000272048.1|RP11-458N5.1
hg19_v2_chr1_-_193075180_193075244	0.238699	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chr4_+_141178440_141178472	0.237349	SOX3_SOX2	ENST00000394205.3|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr4_-_103266219_103266296	0.237234	SOX3_SOX2	ENST00000394833.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr1_+_68150744_68150890	0.23662	SOX3_SOX2	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr12_+_69979446_69979471	0.235113	SOX3_SOX2	ENST00000543146.2|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr9_-_74979420_74979580	0.23464	SOX3_SOX2	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr1_-_26233423_26233482	0.234002	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr17_-_27277615_27277700	0.233974	SOX3_SOX2	ENST00000583747.1|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584236.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr1_-_234667504_234667525	0.232894	SOX3_SOX2	ENST00000421207.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1	ENST00000435574.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1
hg19_v2_chr18_+_33161698_33161709	0.232509	SOX3_SOX2	ENST00000591924.1|GALNT1|ENSG00000141429.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
hg19_v2_chr9_-_123476719_123476810	0.230991	SOX3_SOX2	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr12_+_69979113_69979155	0.230814	SOX3_SOX2	ENST00000299300.6|CCT2|ENSG00000166226.8|chaperonin containing TCP1, subunit 2 (beta)
hg19_v2_chr3_+_19988736_19988747	0.230618	SOX3_SOX2	ENST00000443878.1|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr15_-_65281775_65281844	0.230115	SOX3_SOX2	ENST00000433215.2|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000558415.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome) 	ENST00000557795.1|SPG21|ENSG00000090487.6|spastic paraplegia 21 (autosomal recessive, Mast syndrome)
hg19_v2_chr11_+_94227129_94227195	0.228281	SOX3_SOX2	ENST00000540349.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000535502.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000545130.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000544253.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49 	ENST00000541144.1|ANKRD49|ENSG00000168876.4|ankyrin repeat domain 49
hg19_v2_chr4_-_76649546_76649709	0.227631	SOX3_SOX2	ENST00000508510.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000509561.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000499709.2|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000511868.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr14_+_65182395_65182438	0.225406	SOX3_SOX2	ENST00000554088.1|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr17_+_53046096_53046157	0.225302	SOX3_SOX2	ENST00000376352.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000299341.4|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000405898.1|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000434978.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4 	ENST00000398391.2|STXBP4|ENSG00000166263.9|syntaxin binding protein 4
hg19_v2_chr12_-_24103954_24103972	0.225226	SOX3_SOX2	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr11_-_85430204_85430271	0.223993	SOX3_SOX2	ENST00000389958.3|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000527794.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr11_-_46848393_46848439	0.223745	SOX3_SOX2	ENST00000526496.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr5_+_110073853_110073866	0.222778	SOX3_SOX2	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr8_+_30496078_30496130	0.221824	SOX3_SOX2	ENST00000517349.1|SMIM18|ENSG00000253457.1|small integral membrane protein 18
hg19_v2_chr1_+_59522284_59522317	0.221246	SOX3_SOX2	ENST00000449812.2|RP11-145M4.3|ENSG00000237352.2|RP11-145M4.3
hg19_v2_chrX_-_135962876_135962896	0.221065	SOX3_SOX2	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr12_-_124456598_124456637	0.220623	SOX3_SOX2	ENST00000539761.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92 	ENST00000539551.1|CCDC92|ENSG00000119242.4|coiled-coil domain containing 92
hg19_v2_chr7_-_35840198_35840245	0.21818	SOX3_SOX2	ENST00000412856.1|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000437235.3|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000424194.1|AC007551.3|ENSG00000228878.3|AC007551.3
hg19_v2_chr3_+_119814070_119814134	0.217147	SOX3_SOX2	ENST00000469070.1|RP11-18H7.1|ENSG00000242622.1|RP11-18H7.1
hg19_v2_chr2_+_210443993_210444094	0.216472	SOX3_SOX2	ENST00000392193.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr7_+_26191809_26191890	0.214289	SOX3_SOX2	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr12_-_49076002_49076043	0.214233	SOX3_SOX2	ENST00000357861.3|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550347.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000420613.2|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550931.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000550870.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chr15_+_84116106_84116283	0.213711	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr10_+_22610876_22611035	0.21342	SOX3_SOX2	ENST00000442508.1|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr6_+_122720681_122720713	0.211975	SOX3_SOX2	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr9_+_131902346_131902404	0.210627	SOX3_SOX2	ENST00000432124.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000435305.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr19_+_21324863_21324880	0.209863	SOX3_SOX2	ENST00000598331.1|ZNF431|ENSG00000196705.4|zinc finger protein 431
hg19_v2_chr6_-_27440460_27440505	0.209009	SOX3_SOX2	ENST00000377419.1|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr19_-_36233332_36233360	0.207754	SOX3_SOX2	ENST00000592537.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000246532.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000344990.3|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1 	ENST00000588992.1|IGFLR1|ENSG00000126246.5|IGF-like family receptor 1
hg19_v2_chr7_+_16828866_16828866	0.207452	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr21_+_43442100_43442192	0.207078	SOX3_SOX2	ENST00000455701.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1 	ENST00000596595.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1
hg19_v2_chr8_-_42358742_42358787	0.206984	SOX3_SOX2	ENST00000517366.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr9_-_110540419_110540419	0.205609	SOX3_SOX2	ENST00000398726.3|AL162389.1|ENSG00000214645.3|Uncharacterized protein
hg19_v2_chr12_+_31079652_31079892	0.20553	SOX3_SOX2	ENST00000546076.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000535215.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000544427.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000261177.9|TSPAN11|ENSG00000110900.10|tetraspanin 11
hg19_v2_chr14_-_91884150_91884234	0.205375	SOX3_SOX2	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr4_-_159080806_159080833	0.205064	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr20_+_44036620_44036658	0.204564	SOX3_SOX2	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr11_+_114271367_114271401	0.203205	SOX3_SOX2	ENST00000544582.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7 	ENST00000545678.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr21_-_16437126_16437205	0.202186	SOX3_SOX2	ENST00000318948.4|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr5_-_114631958_114631990	0.202137	SOX3_SOX2	ENST00000395557.4|CCDC112|ENSG00000164221.8|coiled-coil domain containing 112
hg19_v2_chr11_+_71238313_71238313	0.200097	SOX3_SOX2	ENST00000398536.4|KRTAP5-7|ENSG00000244411.2|keratin associated protein 5-7
hg19_v2_chr6_-_27440837_27440912	0.199946	SOX3_SOX2	ENST00000211936.6|ZNF184|ENSG00000096654.11|zinc finger protein 184
hg19_v2_chr4_-_52883786_52883786	0.199346	SOX3_SOX2	ENST00000343457.3|LRRC66|ENSG00000188993.3|leucine rich repeat containing 66
hg19_v2_chr7_-_47621229_47621307	0.199263	SOX3_SOX2	ENST00000434451.1|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr8_-_17270809_17270848	0.199223	SOX3_SOX2	ENST00000180173.5|MTMR7|ENSG00000003987.9|myotubularin related protein 7 	ENST00000521857.1|MTMR7|ENSG00000003987.9|myotubularin related protein 7
hg19_v2_chr4_-_80993854_80993906	0.198983	SOX3_SOX2	ENST00000346652.6|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr2_-_73964447_73964527	0.198319	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chrX_-_77395186_77395203	0.197673	SOX3_SOX2	ENST00000341864.5|TAF9B|ENSG00000187325.4|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
hg19_v2_chr8_-_95487272_95487330	0.197296	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr18_+_3450161_3450210	0.197011	SOX3_SOX2	ENST00000551402.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000577543.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr15_-_60771128_60771277	0.195632	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr5_-_115872124_115872139	0.195548	SOX3_SOX2	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr7_-_127671674_127671774	0.194939	SOX3_SOX2	ENST00000478726.1|LRRC4|ENSG00000128594.3|leucine rich repeat containing 4
hg19_v2_chr16_+_84801852_84801877	0.194452	SOX3_SOX2	ENST00000569925.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10 	ENST00000567526.1|USP10|ENSG00000103194.11|ubiquitin specific peptidase 10
hg19_v2_chr7_-_105516923_105516982	0.194321	SOX3_SOX2	ENST00000478915.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr11_-_102323489_102323576	0.193954	SOX3_SOX2	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr1_-_200379180_200379191	0.193377	SOX3_SOX2	ENST00000294740.3|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr12_-_49582593_49582682	0.193294	SOX3_SOX2	ENST00000295766.5|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr1_+_156119466_156119514	0.19326	SOX3_SOX2	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr17_-_73149921_73149971	0.190601	SOX3_SOX2	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr20_+_60718785_60718853	0.190502	SOX3_SOX2	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr2_-_239148599_239148765	0.190349	SOX3_SOX2	ENST00000409182.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409002.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000450098.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409356.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409160.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409574.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000272937.5|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6
hg19_v2_chr3_+_145782358_145782358	0.189435	SOX3_SOX2	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chr7_-_127672146_127672170	0.189219	SOX3_SOX2	ENST00000476782.1|LRRC4|ENSG00000128594.3|leucine rich repeat containing 4
hg19_v2_chr1_-_46598371_46598708	0.189164	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr18_-_32924372_32924430	0.18899	SOX3_SOX2	ENST00000261332.6|ZNF24|ENSG00000172466.11|zinc finger protein 24 	ENST00000399061.3|ZNF24|ENSG00000172466.11|zinc finger protein 24
hg19_v2_chr8_-_17579726_17579759	0.188862	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr3_+_49977894_49977934	0.188697	SOX3_SOX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr22_+_31742875_31742875	0.188474	SOX3_SOX2	ENST00000504184.2|AC005003.1|ENSG00000213888.2|CDNA FLJ20464 fis, clone KAT06158; HCG1777549; Uncharacterized protein
hg19_v2_chr11_-_14358620_14358712	0.187304	SOX3_SOX2	ENST00000531421.1|RRAS2|ENSG00000133818.8|related RAS viral (r-ras) oncogene homolog 2
hg19_v2_chr17_+_57233087_57233146	0.187276	SOX3_SOX2	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr12_-_31477072_31477110	0.187077	SOX3_SOX2	ENST00000454658.2|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr12_-_105478339_105478361	0.186934	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr14_+_64971438_64971450	0.186536	SOX3_SOX2	ENST00000555321.1|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr5_+_49962772_49962815	0.186458	SOX3_SOX2	ENST00000281631.5|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000513738.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503665.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000514067.2|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8 	ENST00000503046.1|PARP8|ENSG00000151883.12|poly (ADP-ribose) polymerase family, member 8
hg19_v2_chr2_+_207220463_207220463	0.186245	SOX3_SOX2	ENST00000598562.1|AC017081.1|ENSG00000269633.1|Uncharacterized protein
hg19_v2_chr17_+_19030782_19030907	0.186185	SOX3_SOX2	ENST00000344415.4|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like 	ENST00000577213.1|GRAPL|ENSG00000189152.6|GRB2-related adaptor protein-like
hg19_v2_chr14_-_89878369_89878496	0.186039	SOX3_SOX2	ENST00000553840.1|FOXN3|ENSG00000053254.11|forkhead box N3 	ENST00000556916.1|FOXN3|ENSG00000053254.11|forkhead box N3
hg19_v2_chr10_+_114710211_114710229	0.186018	SOX3_SOX2	ENST00000349937.2|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369397.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr6_-_72129806_72129970	0.185662	SOX3_SOX2	ENST00000413945.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000602878.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000436803.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000421704.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000441570.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chrX_+_135579238_135579416	0.185538	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr3_+_140947563_140947577	0.184745	SOX3_SOX2	ENST00000505013.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr8_+_79578282_79578334	0.184688	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr17_-_48072574_48072597	0.182302	SOX3_SOX2	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr2_+_46926048_46926095	0.182108	SOX3_SOX2	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr4_+_26323764_26323831	0.181788	SOX3_SOX2	ENST00000514730.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region 	ENST00000507574.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr1_+_109419804_109419878	0.180789	SOX3_SOX2	ENST00000435475.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr15_+_77223960_77223994	0.180499	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr1_+_169075554_169075571	0.180363	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr17_-_46623441_46623441	0.180319	SOX3_SOX2	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr19_-_48673465_48673543	0.180073	SOX3_SOX2	ENST00000598938.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr19_+_21106081_21106207	0.179687	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr5_+_138210919_138211157	0.17961	SOX3_SOX2	ENST00000522013.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520260.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523298.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000520865.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519634.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517533.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000523685.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519768.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000517656.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521683.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000521640.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000519116.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr15_-_52944231_52944268	0.179049	SOX3_SOX2	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr14_-_21562671_21562702	0.178798	SOX3_SOX2	ENST00000554923.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr3_+_38323785_38323789	0.17878	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr8_+_21777159_21777221	0.178336	SOX3_SOX2	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr8_-_73793975_73794038	0.178227	SOX3_SOX2	ENST00000523881.1|RP11-1145L24.1|ENSG00000253784.1|RP11-1145L24.1
hg19_v2_chr19_+_52800410_52800454	0.178118	SOX3_SOX2	ENST00000595962.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000598016.1|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000334564.7|ZNF480|ENSG00000198464.9|zinc finger protein 480 	ENST00000490272.1|ZNF480|ENSG00000198464.9|zinc finger protein 480
hg19_v2_chr19_-_49864746_49864780	0.177866	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr17_-_49124230_49124248	0.175822	SOX3_SOX2	ENST00000510283.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000510855.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr6_+_22146851_22146883	0.17574	SOX3_SOX2	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr17_-_37764128_37764258	0.175667	SOX3_SOX2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr14_-_64971288_64971316	0.175429	SOX3_SOX2	ENST00000394715.1|ZBTB25|ENSG00000089775.7|zinc finger and BTB domain containing 25
hg19_v2_chr12_+_28605426_28605475	0.174683	SOX3_SOX2	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr18_+_63273310_63273326	0.174545	SOX3_SOX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chr1_-_91487013_91487070	0.173646	SOX3_SOX2	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr8_-_124553437_124553453	0.1736	SOX3_SOX2	ENST00000517956.1|FBXO32|ENSG00000156804.3|F-box protein 32 	ENST00000443022.2|FBXO32|ENSG00000156804.3|F-box protein 32
hg19_v2_chr14_-_50583271_50583318	0.173374	SOX3_SOX2	ENST00000395860.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase 	ENST00000395859.2|VCPKMT|ENSG00000100483.9|valosin containing protein lysine (K) methyltransferase
hg19_v2_chr4_-_157892167_157892228	0.17216	SOX3_SOX2	ENST00000541126.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr14_-_35344093_35344138	0.171747	SOX3_SOX2	ENST00000382422.2|BAZ1A|ENSG00000198604.6|bromodomain adjacent to zinc finger domain, 1A
hg19_v2_chr6_+_41040678_41040722	0.171436	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr1_-_26232522_26232644	0.171281	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr6_-_105307417_105307435	0.169265	SOX3_SOX2	ENST00000524020.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr12_+_49297899_49297955	0.169058	SOX3_SOX2	ENST00000552942.1|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65 	ENST00000320516.4|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr17_-_16472483_16472533	0.16868	SOX3_SOX2	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr20_+_6748311_6748352	0.167103	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr7_+_7222233_7222327	0.166601	SOX3_SOX2	ENST00000436587.2|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr3_-_188665428_188665478	0.166098	SOX3_SOX2	ENST00000444488.1|TPRG1-AS1|ENSG00000234076.1|TPRG1 antisense RNA 1
hg19_v2_chr10_-_33247124_33247207	0.166042	SOX3_SOX2	ENST00000414670.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000302278.3|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000374956.4|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000488494.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000417122.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000474568.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr7_+_30185406_30185417	0.165644	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr2_-_114647327_114647351	0.16524	SOX3_SOX2	ENST00000602760.1|RP11-141B14.1|ENSG00000270019.1|RP11-141B14.1
hg19_v2_chr7_-_27219849_27219880	0.165239	SOX3_SOX2	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr10_+_17272608_17272692	0.165025	SOX3_SOX2	ENST00000421459.2|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr8_+_26435359_26435426	0.164959	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr19_+_1942453_1942485	0.164105	SOX3_SOX2	ENST00000591752.1|CSNK1G2|ENSG00000133275.11|casein kinase 1, gamma 2
hg19_v2_chr22_+_20905269_20905278	0.163914	SOX3_SOX2	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr2_-_165424973_165425010	0.163719	SOX3_SOX2	ENST00000543549.1|GRB14|ENSG00000115290.5|growth factor receptor-bound protein 14
hg19_v2_chr19_-_37958086_37958150	0.163594	SOX3_SOX2	ENST00000592490.1|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000392149.2|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr7_+_111846643_111846704	0.163109	SOX3_SOX2	ENST00000361822.3|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr11_-_57417405_57417423	0.162861	SOX3_SOX2	ENST00000524669.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila) 	ENST00000300022.3|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr10_-_89577910_89578010	0.162605	SOX3_SOX2	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr5_+_65222438_65222471	0.162557	SOX3_SOX2	ENST00000380938.2|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr4_-_184580304_184580351	0.16224	SOX3_SOX2	ENST00000510968.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000512740.1|RWDD4|ENSG00000182552.10|RWD domain containing 4 	ENST00000327570.9|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr7_+_23145884_23145917	0.161954	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr2_+_24150180_24150202	0.161043	SOX3_SOX2	ENST00000404924.1|UBXN2A|ENSG00000173960.8|UBX domain protein 2A
hg19_v2_chr3_-_197024394_197024740	0.160228	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr13_-_25496926_25497034	0.159869	SOX3_SOX2	ENST00000545981.1|CENPJ|ENSG00000151849.10|centromere protein J 	ENST00000381884.4|CENPJ|ENSG00000151849.10|centromere protein J
hg19_v2_chr12_-_48213735_48213763	0.159795	SOX3_SOX2	ENST00000417902.1|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000417107.1|HDAC7|ENSG00000061273.13|histone deacetylase 7
hg19_v2_chr12_+_1099675_1099751	0.159304	SOX3_SOX2	ENST00000545318.2|ERC1|ENSG00000082805.15|ELKS/RAB6-interacting/CAST family member 1
hg19_v2_chr1_+_227751231_227751273	0.158308	SOX3_SOX2	ENST00000343776.5|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000608949.1|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000397097.3|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr9_+_123884038_123884096	0.157862	SOX3_SOX2	ENST00000373847.1|CNTRL|ENSG00000119397.12|centriolin
hg19_v2_chr21_+_27011584_27011618	0.15773	SOX3_SOX2	ENST00000400532.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000480456.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000312957.5|JAM2|ENSG00000154721.10|junctional adhesion molecule 2
hg19_v2_chr7_+_30068260_30068301	0.157475	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr19_-_45004556_45004581	0.156422	SOX3_SOX2	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr10_-_70231639_70231879	0.156158	SOX3_SOX2	ENST00000551118.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000358410.3|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399180.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399179.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2
hg19_v2_chr11_-_57417367_57417401	0.156055	SOX3_SOX2	ENST00000534810.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr11_+_114271251_114271300	0.156049	SOX3_SOX2	ENST00000375490.5|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr4_+_95916947_95917006	0.155099	SOX3_SOX2	ENST00000506363.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr7_-_99774945_99775026	0.154708	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr19_+_58694742_58694863	0.154374	SOX3_SOX2	ENST00000597528.1|ZNF274|ENSG00000171606.13|zinc finger protein 274 	ENST00000594839.1|ZNF274|ENSG00000171606.13|zinc finger protein 274
hg19_v2_chr3_-_138312971_138313132	0.154164	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr5_-_146435572_146435590	0.154035	SOX3_SOX2	ENST00000394414.1|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr16_+_68573116_68573228	0.153754	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr1_-_226496898_226496955	0.153723	SOX3_SOX2	ENST00000481685.1|LIN9|ENSG00000183814.11|lin-9 homolog (C. elegans)
hg19_v2_chr8_-_66753682_66753743	0.153676	SOX3_SOX2	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr4_-_88141615_88141751	0.153607	SOX3_SOX2	ENST00000545252.1|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000425278.2|KLHL8|ENSG00000145332.9|kelch-like family member 8 	ENST00000498875.2|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr11_+_110001723_110001732	0.153581	SOX3_SOX2	ENST00000528673.1|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr1_+_65886326_65886406	0.153313	SOX3_SOX2	ENST00000371059.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000371060.3|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000349533.6|LEPR|ENSG00000116678.14|leptin receptor 	ENST00000406510.3|LEPR|ENSG00000116678.14|leptin receptor
hg19_v2_chr11_+_18154059_18154135	0.152626	SOX3_SOX2	ENST00000531264.1|MRGPRX3|ENSG00000179826.5|MAS-related GPR, member X3
hg19_v2_chr17_+_65374075_65374271	0.152443	SOX3_SOX2	ENST00000581322.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr18_+_29078131_29078218	0.152361	SOX3_SOX2	ENST00000585206.1|DSG2|ENSG00000046604.8|desmoglein 2
hg19_v2_chr16_+_21608525_21608543	0.151739	SOX3_SOX2	ENST00000567404.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr1_+_66797687_66797884	0.151189	SOX3_SOX2	ENST00000371045.5|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000531025.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific 	ENST00000526197.1|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr4_+_141677577_141677682	0.150528	SOX3_SOX2	ENST00000609937.1|RP11-102N12.3|ENSG00000273472.1|RP11-102N12.3
hg19_v2_chr2_+_10262857_10262873	0.149883	SOX3_SOX2	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr19_+_43325937_43326015	0.149762	SOX3_SOX2	ENST00000425668.1|AC004603.4|ENSG00000225877.1|AC004603.4
hg19_v2_chr16_+_53241854_53241953	0.149661	SOX3_SOX2	ENST00000565803.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr15_+_96904487_96904487	0.149376	SOX3_SOX2	ENST00000600790.1|AC087477.1|ENSG00000268484.1|Uncharacterized protein
hg19_v2_chr3_+_49977440_49977482	0.149106	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr3_-_57583052_57583079	0.148916	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr7_+_12726623_12726750	0.148828	SOX3_SOX2	ENST00000439721.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr1_+_166808692_166808774	0.148665	SOX3_SOX2	ENST00000367876.4|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr8_-_110346614_110346722	0.148548	SOX3_SOX2	ENST00000239690.4|NUDCD1|ENSG00000120526.6|NudC domain containing 1
hg19_v2_chr18_+_20494078_20494108	0.148391	SOX3_SOX2	ENST00000579124.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000577588.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000582354.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8 	ENST00000581819.1|RBBP8|ENSG00000101773.12|retinoblastoma binding protein 8
hg19_v2_chr8_+_62200509_62200590	0.14837	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr2_+_170590321_170590408	0.148201	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr6_+_53794780_53794844	0.14812	SOX3_SOX2	ENST00000505762.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000511369.1|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1	ENST00000431554.2|RP11-411K7.1|ENSG00000236740.2|RP11-411K7.1
hg19_v2_chr7_+_18535321_18535343	0.147732	SOX3_SOX2	ENST00000413380.1|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000430454.1|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr18_+_56530692_56530723	0.147376	SOX3_SOX2	ENST00000588601.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr21_-_40685504_40685516	0.147355	SOX3_SOX2	ENST00000380800.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr12_-_11036844_11036861	0.147248	SOX3_SOX2	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chrX_+_71401570_71401644	0.147129	SOX3_SOX2	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr4_+_78079570_78079586	0.146943	SOX3_SOX2	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr2_+_173955327_173955347	0.146918	SOX3_SOX2	ENST00000422149.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr19_-_37019136_37019178	0.146783	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr4_+_154387480_154387536	0.146253	SOX3_SOX2	ENST00000409663.3|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000440693.1|KIAA0922|ENSG00000121210.11|KIAA0922 	ENST00000409959.3|KIAA0922|ENSG00000121210.11|KIAA0922
hg19_v2_chr13_+_103451399_103451539	0.145676	SOX3_SOX2	ENST00000257336.1|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing 	ENST00000448849.2|BIVM|ENSG00000134897.9|basic, immunoglobulin-like variable motif containing
hg19_v2_chr18_+_13726645_13726768	0.145671	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr16_+_70207686_70208060	0.145233	SOX3_SOX2	ENST00000541793.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000314151.8|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000565806.1|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000569347.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000536907.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C
hg19_v2_chr2_-_43266680_43266701	0.145021	SOX3_SOX2	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr1_+_212475148_212475207	0.144828	SOX3_SOX2	ENST00000537030.3|PPP2R5A|ENSG00000066027.7|protein phosphatase 2, regulatory subunit B', alpha
hg19_v2_chr12_+_49212514_49212692	0.144511	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr17_-_48207115_48207152	0.144099	SOX3_SOX2	ENST00000511964.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr5_+_179135246_179135327	0.143732	SOX3_SOX2	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr5_+_65018017_65018088	0.143691	SOX3_SOX2	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr9_+_130026756_130026871	0.143243	SOX3_SOX2	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr1_+_29241027_29241095	0.142936	SOX3_SOX2	ENST00000373797.1|EPB41|ENSG00000159023.14|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
hg19_v2_chr15_-_57210769_57210803	0.142509	SOX3_SOX2	ENST00000559000.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr4_+_128703295_128703496	0.142031	SOX3_SOX2	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chrX_+_45364633_45364657	0.141842	SOX3_SOX2	ENST00000435394.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1	ENST00000609127.1|RP11-245M24.1|ENSG00000229563.2|RP11-245M24.1
hg19_v2_chr6_-_11232891_11232915	0.141398	SOX3_SOX2	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr8_+_81398444_81398472	0.141241	SOX3_SOX2	ENST00000455036.3|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10 	ENST00000426744.2|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr1_-_32384693_32384724	0.140992	SOX3_SOX2	ENST00000602683.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2 	ENST00000470404.1|PTP4A2|ENSG00000184007.13|protein tyrosine phosphatase type IVA, member 2
hg19_v2_chr10_-_70092635_70092666	0.140573	SOX3_SOX2	ENST00000309049.4|PBLD|ENSG00000108187.11|phenazine biosynthesis-like protein domain containing
hg19_v2_chr2_-_9143786_9143942	0.140391	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr19_-_21950332_21950356	0.140211	SOX3_SOX2	ENST00000598026.1|ZNF100|ENSG00000197020.6|zinc finger protein 100
hg19_v2_chr4_+_141445333_141445362	0.139916	SOX3_SOX2	ENST00000507667.1|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr8_+_99076509_99076539	0.139755	SOX3_SOX2	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr5_-_111093759_111093915	0.139403	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr6_-_41040195_41040263	0.139275	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr18_+_32820990_32821031	0.138646	SOX3_SOX2	ENST00000601719.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000591206.1|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000330501.7|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000261333.6|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000355632.4|ZNF397|ENSG00000186812.8|zinc finger protein 397 	ENST00000585800.1|ZNF397|ENSG00000186812.8|zinc finger protein 397
hg19_v2_chr6_-_132834184_132834337	0.138518	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr9_-_74383302_74383437	0.138291	SOX3_SOX2	ENST00000377066.5|TMEM2|ENSG00000135048.9|transmembrane protein 2
hg19_v2_chr13_+_49684445_49684517	0.138201	SOX3_SOX2	ENST00000398316.3|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr3_-_197024965_197025038	0.138178	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr10_+_94451574_94451612	0.138161	SOX3_SOX2	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr2_+_32288657_32288688	0.138147	SOX3_SOX2	ENST00000345662.1|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr1_-_145715565_145715614	0.137975	SOX3_SOX2	ENST00000369288.2|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000369290.1|CD160|ENSG00000117281.11|CD160 molecule 	ENST00000401557.3|CD160|ENSG00000117281.11|CD160 molecule
hg19_v2_chr14_-_21516590_21516692	0.137962	SOX3_SOX2	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr3_+_49977490_49977522	0.137184	SOX3_SOX2	ENST00000539992.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr17_+_55334364_55334412	0.136963	SOX3_SOX2	ENST00000322684.3|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2 	ENST00000579590.1|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr22_-_38480100_38480159	0.136898	SOX3_SOX2	ENST00000427592.1|SLC16A8|ENSG00000100156.6|solute carrier family 16 (monocarboxylate transporter), member 8
hg19_v2_chr21_-_16437255_16437340	0.136756	SOX3_SOX2	ENST00000400199.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1 	ENST00000400202.1|NRIP1|ENSG00000180530.5|nuclear receptor interacting protein 1
hg19_v2_chr3_-_148939835_148939842	0.136626	SOX3_SOX2	ENST00000264613.6|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr18_-_61329118_61329197	0.136431	SOX3_SOX2	ENST00000332821.8|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3 	ENST00000283752.5|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3
hg19_v2_chr4_-_120549163_120549220	0.136346	SOX3_SOX2	ENST00000394439.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific 	ENST00000420633.1|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr14_-_71276211_71276255	0.135884	SOX3_SOX2	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr2_+_153191706_153191751	0.135814	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr12_-_120907374_120907454	0.135746	SOX3_SOX2	ENST00000550458.1|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr3_+_49977523_49977540	0.135644	SOX3_SOX2	ENST00000422955.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr6_+_10556215_10556240	0.135627	SOX3_SOX2	ENST00000316170.3|GCNT2|ENSG00000111846.11|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
hg19_v2_chr4_-_175443943_175444049	0.135462	SOX3_SOX2	ENST00000296522.6|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr3_+_112930373_112930384	0.134618	SOX3_SOX2	ENST00000498710.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr10_-_14596140_14596228	0.134342	SOX3_SOX2	ENST00000496330.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr19_-_23941680_23941704	0.134249	SOX3_SOX2	ENST00000402377.3|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr11_-_95522907_95522989	0.133962	SOX3_SOX2	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr12_-_117628253_117628308	0.133498	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr7_-_107968999_107969099	0.133353	SOX3_SOX2	ENST00000456431.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr2_+_179059188_179059250	0.133005	SOX3_SOX2	ENST00000392505.2|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000359685.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000357080.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000409045.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr2_+_61293021_61293093	0.132807	SOX3_SOX2	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr5_+_109025067_109025146	0.132693	SOX3_SOX2	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr5_+_72112418_72112456	0.132523	SOX3_SOX2	ENST00000454282.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr19_+_36705504_36705644	0.132508	SOX3_SOX2	ENST00000456324.1|ZNF146|ENSG00000167635.7|zinc finger protein 146
hg19_v2_chr17_+_78010428_78010465	0.132459	SOX3_SOX2	ENST00000397545.4|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000374877.3|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000269318.5|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000374876.4|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000576033.1|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40 	ENST00000574099.1|CCDC40|ENSG00000141519.10|coiled-coil domain containing 40
hg19_v2_chr3_+_112930946_112931042	0.132169	SOX3_SOX2	ENST00000462425.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr1_+_89990431_89990493	0.132047	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr3_-_27525865_27525887	0.132042	SOX3_SOX2	ENST00000445684.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr12_+_49761147_49761167	0.131974	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr11_+_17316870_17316897	0.131972	SOX3_SOX2	ENST00000458064.2|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr7_+_129015671_129015685	0.131612	SOX3_SOX2	ENST00000466993.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr4_-_184241927_184241927	0.131509	SOX3_SOX2	ENST00000323319.5|CLDN22|ENSG00000177300.5|claudin 22
hg19_v2_chr18_-_47013586_47013633	0.131319	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr12_-_49582978_49583107	0.131295	SOX3_SOX2	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr4_-_99578776_99578786	0.131104	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr19_-_38714847_38714890	0.130996	SOX3_SOX2	ENST00000420980.2|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1 	ENST00000355526.4|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr4_-_57687847_57687911	0.130948	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr1_-_198906528_198906573	0.130663	SOX3_SOX2	ENST00000432296.1|MIR181A1HG|ENSG00000229989.3|MIR181A1 host gene (non-protein coding)
hg19_v2_chr20_-_49547731_49547753	0.130027	SOX3_SOX2	ENST00000396029.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr9_-_103115135_103115183	0.129893	SOX3_SOX2	ENST00000537512.1|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr11_-_123525289_123525341	0.129685	SOX3_SOX2	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr21_+_30672433_30672464	0.12968	SOX3_SOX2	ENST00000451655.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr19_-_5293243_5293282	0.129609	SOX3_SOX2	ENST00000591760.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr18_+_6729698_6729724	0.129425	SOX3_SOX2	ENST00000383472.4|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr1_+_212968025_212968164	0.129351	SOX3_SOX2	ENST00000530399.2|TATDN3|ENSG00000203705.6|TatD DNase domain containing 3
hg19_v2_chr1_+_156338993_156339011	0.129273	SOX3_SOX2	ENST00000368249.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000368246.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000537040.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000400992.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000255013.3|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000451864.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene)
hg19_v2_chr6_-_41863098_41863120	0.129269	SOX3_SOX2	ENST00000373006.1|USP49|ENSG00000164663.9|ubiquitin specific peptidase 49
hg19_v2_chr14_-_100772796_100772827	0.129229	SOX3_SOX2	ENST00000554060.1|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr1_+_93913713_93913839	0.128162	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr19_+_37960240_37960299	0.12796	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr8_+_24151553_24151590	0.127869	SOX3_SOX2	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr15_+_85923797_85923844	0.127764	SOX3_SOX2	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr19_-_821931_821981	0.127495	SOX3_SOX2	ENST00000359894.2|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000520876.3|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000519502.1|LPPR3|ENSG00000129951.14|hsa-mir-3187
hg19_v2_chr6_+_56954919_56955005	0.127468	SOX3_SOX2	ENST00000508603.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000491832.2|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370710.6|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr10_+_91174486_91174528	0.127425	SOX3_SOX2	ENST00000416601.1|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr15_-_101792137_101792159	0.127051	SOX3_SOX2	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr11_-_95523500_95523580	0.126852	SOX3_SOX2	ENST00000540054.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr22_+_20905422_20905577	0.126453	SOX3_SOX2	ENST00000424287.1|MED15|ENSG00000099917.13|mediator complex subunit 15 	ENST00000423862.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr12_+_133707570_133707570	0.125942	SOX3_SOX2	ENST00000416488.1|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000540096.2|CTD-2140B24.4|ENSG00000256825.4|Zinc finger protein 268
hg19_v2_chr7_-_41742697_41742714	0.125879	SOX3_SOX2	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr2_-_17981462_17981584	0.124629	SOX3_SOX2	ENST00000402989.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6 	ENST00000428868.1|SMC6|ENSG00000163029.11|structural maintenance of chromosomes 6
hg19_v2_chr12_-_57882498_57882509	0.124529	SOX3_SOX2	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr16_-_28303360_28303393	0.12431	SOX3_SOX2	ENST00000501520.1|RP11-57A19.2|ENSG00000246465.1|RP11-57A19.2
hg19_v2_chr7_+_141463897_141463897	0.124239	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr11_+_114271314_114271365	0.124172	SOX3_SOX2	ENST00000541475.1|RBM7|ENSG00000076053.6|RNA binding motif protein 7
hg19_v2_chr5_+_140705777_140705844	0.123996	SOX3_SOX2	ENST00000606901.1|AC005618.6|ENSG00000272070.1|AC005618.6	ENST00000606674.1|AC005618.6|ENSG00000272070.1|AC005618.6
hg19_v2_chr7_+_114055052_114055378	0.123667	SOX3_SOX2	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr8_+_24151620_24151647	0.123545	SOX3_SOX2	ENST00000437154.2|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr10_-_97321112_97321163	0.12332	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr16_+_30406423_30406447	0.123255	SOX3_SOX2	ENST00000524644.1|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr21_-_40685536_40685591	0.123182	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr1_-_243418344_243418356	0.122924	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr3_+_182983090_182983115	0.122896	SOX3_SOX2	ENST00000465010.1|B3GNT5|ENSG00000176597.7|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
hg19_v2_chr1_-_202858227_202858283	0.12278	SOX3_SOX2	ENST00000367262.3|RABIF|ENSG00000183155.4|RAB interacting factor
hg19_v2_chr18_+_9885760_9885780	0.122672	SOX3_SOX2	ENST00000536353.2|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa) 	ENST00000584255.1|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr2_+_69240302_69240332	0.122667	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr8_-_105601134_105601252	0.122477	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr12_+_8850277_8850313	0.122424	SOX3_SOX2	ENST00000539923.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B 	ENST00000537189.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B
hg19_v2_chr17_-_56065540_56065627	0.122372	SOX3_SOX2	ENST00000583932.1|VEZF1|ENSG00000136451.4|vascular endothelial zinc finger 1
hg19_v2_chr14_-_50698276_50698304	0.12231	SOX3_SOX2	ENST00000216373.5|SOS2|ENSG00000100485.7|son of sevenless homolog 2 (Drosophila)
hg19_v2_chr6_+_159290917_159290971	0.122011	SOX3_SOX2	ENST00000367072.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr17_-_17184546_17184569	0.121754	SOX3_SOX2	ENST00000417352.1|COPS3|ENSG00000141030.8|COP9 signalosome subunit 3
hg19_v2_chr2_+_210444298_210444343	0.121636	SOX3_SOX2	ENST00000445941.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr7_-_84121858_84121870	0.12142	SOX3_SOX2	ENST00000448879.1|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr9_-_139658965_139658975	0.12135	SOX3_SOX2	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr4_+_90033968_90033968	0.12117	SOX3_SOX2	ENST00000317005.2|TIGD2|ENSG00000180346.2|tigger transposable element derived 2
hg19_v2_chr1_+_201857798_201857836	0.121141	SOX3_SOX2	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr4_+_184580420_184580485	0.120854	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr4_-_113558014_113558073	0.120784	SOX3_SOX2	ENST00000503172.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000505019.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000309071.5|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr16_+_21610879_21610974	0.120452	SOX3_SOX2	ENST00000396014.4|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_-_169239921_169239972	0.120368	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr17_+_1674982_1675041	0.120096	SOX3_SOX2	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr11_-_125365435_125365561	0.120077	SOX3_SOX2	ENST00000524435.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr8_+_98656693_98656774	0.119816	SOX3_SOX2	ENST00000519934.1|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr15_+_52043758_52043809	0.119736	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr3_+_19988566_19988648	0.119596	SOX3_SOX2	ENST00000273047.4|RAB5A|ENSG00000144566.6|RAB5A, member RAS oncogene family
hg19_v2_chr4_-_103266626_103266647	0.119568	SOX3_SOX2	ENST00000356736.4|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr18_-_53089723_53089786	0.119296	SOX3_SOX2	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr2_+_201677390_201677411	0.119083	SOX3_SOX2	ENST00000447069.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr12_-_50643664_50643679	0.118376	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chrX_+_47342970_47342970	0.118252	SOX3_SOX2	ENST00000357412.1|CXorf24|ENSG00000196741.3|chromosome X open reading frame 24
hg19_v2_chrX_-_63425561_63425624	0.11803	SOX3_SOX2	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr7_-_112727774_112727833	0.117799	SOX3_SOX2	ENST00000297146.3|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000501255.2|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr2_+_127413704_127413760	0.11772	SOX3_SOX2	ENST00000409836.3|GYPC|ENSG00000136732.10|glycophorin C (Gerbich blood group)
hg19_v2_chr1_+_185703513_185703683	0.117552	SOX3_SOX2	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr2_+_162101247_162101266	0.117274	SOX3_SOX2	ENST00000439050.1|AC009299.3|ENSG00000227403.1|AC009299.3	ENST00000436506.1|AC009299.3|ENSG00000227403.1|AC009299.3
hg19_v2_chr3_+_3841108_3841126	0.116994	SOX3_SOX2	ENST00000319331.3|LRRN1|ENSG00000175928.5|leucine rich repeat neuronal 1
hg19_v2_chr12_+_93772326_93772384	0.116901	SOX3_SOX2	ENST00000550056.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000549992.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000548662.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4 	ENST00000547014.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr17_+_38171681_38171740	0.116591	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr6_-_46620522_46620560	0.116556	SOX3_SOX2	ENST00000275016.2|CYP39A1|ENSG00000146233.3|cytochrome P450, family 39, subfamily A, polypeptide 1
hg19_v2_chr9_-_73483926_73483945	0.116477	SOX3_SOX2	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr5_-_146435694_146435705	0.116359	SOX3_SOX2	ENST00000356826.3|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chrX_-_114252193_114252207	0.116307	SOX3_SOX2	ENST00000243213.1|IL13RA2|ENSG00000123496.3|interleukin 13 receptor, alpha 2
hg19_v2_chr3_+_149535022_149535031	0.116262	SOX3_SOX2	ENST00000466795.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr22_-_32341336_32341336	0.116098	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr5_+_112074029_112074040	0.115917	SOX3_SOX2	ENST00000512211.2|APC|ENSG00000134982.12|adenomatous polyposis coli
hg19_v2_chr1_-_115259337_115259515	0.115733	SOX3_SOX2	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr10_+_91174314_91174403	0.115621	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr4_+_113152978_113152989	0.115485	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr21_-_40685477_40685496	0.115348	SOX3_SOX2	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr4_+_128702969_128702984	0.115189	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr11_-_92930556_92930621	0.114949	SOX3_SOX2	ENST00000529184.1|SLC36A4|ENSG00000180773.10|solute carrier family 36 (proton/amino acid symporter), member 4
hg19_v2_chr2_+_58655461_58655492	0.114935	SOX3_SOX2	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr3_+_141043050_141043063	0.114648	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr12_+_124457746_124457842	0.114645	SOX3_SOX2	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr2_-_61765315_61765422	0.113715	SOX3_SOX2	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr1_-_108231101_108231133	0.113693	SOX3_SOX2	ENST00000544443.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000415432.2|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr3_+_127317945_127317945	0.113595	SOX3_SOX2	ENST00000472731.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr1_-_53793584_53793719	0.113268	SOX3_SOX2	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chrX_+_15518923_15518952	0.11313	SOX3_SOX2	ENST00000348343.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr8_+_92114873_92114890	0.112829	SOX3_SOX2	ENST00000343709.3|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69 	ENST00000448384.2|LRRC69|ENSG00000214954.4|leucine rich repeat containing 69
hg19_v2_chr3_+_138067666_138067745	0.112795	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr8_+_59323823_59323947	0.112676	SOX3_SOX2	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr12_+_69080734_69080808	0.112667	SOX3_SOX2	ENST00000378905.2|NUP107|ENSG00000111581.5|nucleoporin 107kDa
hg19_v2_chr8_+_92261516_92261555	0.112557	SOX3_SOX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr1_-_8086343_8086378	0.112093	SOX3_SOX2	ENST00000474874.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000469499.1|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1 	ENST00000377482.5|ERRFI1|ENSG00000116285.8|ERBB receptor feedback inhibitor 1
hg19_v2_chr13_+_111365602_111365625	0.112088	SOX3_SOX2	ENST00000333219.7|ING1|ENSG00000153487.11|inhibitor of growth family, member 1
hg19_v2_chr8_+_132320792_132320868	0.111938	SOX3_SOX2	ENST00000519695.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1	ENST00000524275.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1
hg19_v2_chr6_-_119031228_119031261	0.111912	SOX3_SOX2	ENST00000392500.3|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like 	ENST00000368488.5|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like 	ENST00000434604.1|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like
hg19_v2_chr6_+_84569359_84569445	0.111866	SOX3_SOX2	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr8_-_42752418_42752452	0.111554	SOX3_SOX2	ENST00000524954.1|RNF170|ENSG00000120925.9|ring finger protein 170
hg19_v2_chr12_-_31478428_31478469	0.111456	SOX3_SOX2	ENST00000543615.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr10_+_115999004_115999019	0.111359	SOX3_SOX2	ENST00000603594.1|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr11_+_13690200_13690244	0.11101	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr9_-_88896977_88897023	0.110963	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr7_+_115850547_115850626	0.110897	SOX3_SOX2	ENST00000358204.4|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000455989.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains) 	ENST00000537767.1|TES|ENSG00000135269.13|testis derived transcript (3 LIM domains)
hg19_v2_chr6_-_7313381_7313458	0.110884	SOX3_SOX2	ENST00000489567.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000479365.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000462112.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000397511.2|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000534851.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000474597.1|SSR1|ENSG00000124783.8|signal sequence receptor, alpha 	ENST00000244763.4|SSR1|ENSG00000124783.8|signal sequence receptor, alpha
hg19_v2_chr16_-_279405_279462	0.11072	SOX3_SOX2	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr11_-_117747327_117747384	0.110478	SOX3_SOX2	ENST00000584230.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000527429.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000584394.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000532984.1|FXYD6-FXYD2|ENSG00000255245.3|FXYD6-FXYD2 readthrough
hg19_v2_chr16_-_18911366_18911366	0.110324	SOX3_SOX2	ENST00000565224.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr8_-_94752946_94753008	0.110102	SOX3_SOX2	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr4_-_48782259_48782335	0.109944	SOX3_SOX2	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr7_-_22234381_22234430	0.109907	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr17_-_49198216_49198236	0.109903	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr7_+_18535346_18535399	0.109727	SOX3_SOX2	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr1_+_24118452_24118482	0.109693	SOX3_SOX2	ENST00000421070.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr4_-_184580353_184580378	0.109466	SOX3_SOX2	ENST00000326397.5|RWDD4|ENSG00000182552.10|RWD domain containing 4
hg19_v2_chr2_-_38829768_38829825	0.109431	SOX3_SOX2	ENST00000378915.3|HNRNPLL|ENSG00000143889.11|heterogeneous nuclear ribonucleoprotein L-like
hg19_v2_chr2_+_10442993_10443051	0.109406	SOX3_SOX2	ENST00000423674.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1 	ENST00000307845.3|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr9_-_119162885_119162885	0.109284	SOX3_SOX2	ENST00000445861.2|PAPPA-AS1|ENSG00000256040.1|PAPPA antisense RNA 1
hg19_v2_chr1_+_203096831_203096864	0.108918	SOX3_SOX2	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chr12_-_57522813_57522883	0.108761	SOX3_SOX2	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr12_+_54694979_54694993	0.108629	SOX3_SOX2	ENST00000552848.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr10_-_14614311_14614382	0.108563	SOX3_SOX2	ENST00000479731.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000468492.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr4_+_71588372_71588404	0.108378	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr4_-_120548779_120548825	0.108314	SOX3_SOX2	ENST00000264805.5|PDE5A|ENSG00000138735.11|phosphodiesterase 5A, cGMP-specific
hg19_v2_chr3_-_165555200_165555260	0.108306	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chr3_-_46786245_46786245	0.108107	SOX3_SOX2	ENST00000442359.2|PRSS45|ENSG00000188086.8|protease, serine, 45
hg19_v2_chr4_+_153857468_153857520	0.107923	SOX3_SOX2	ENST00000511601.1|FHDC1|ENSG00000137460.4|FH2 domain containing 1
hg19_v2_chr14_+_97263641_97263764	0.107898	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr12_-_8815404_8815438	0.107895	SOX3_SOX2	ENST00000359478.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000396549.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr2_+_69240511_69240532	0.107457	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr9_+_36136700_36136742	0.107454	SOX3_SOX2	ENST00000396613.3|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377959.1|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2 	ENST00000377960.4|GLIPR2|ENSG00000122694.11|GLI pathogenesis-related 2
hg19_v2_chr1_-_235491462_235491534	0.107279	SOX3_SOX2	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr13_-_31736132_31736176	0.107226	SOX3_SOX2	ENST00000429785.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr19_+_58341656_58341694	0.107157	SOX3_SOX2	ENST00000442832.4|ZNF587B|ENSG00000269343.2|zinc finger protein 587B 	ENST00000594901.1|ZNF587B|ENSG00000269343.2|zinc finger protein 587B
hg19_v2_chr5_-_118324200_118324254	0.10683	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr19_+_52772832_52772861	0.106319	SOX3_SOX2	ENST00000593703.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000601711.1|ZNF766|ENSG00000196214.6|zinc finger protein 766 	ENST00000599581.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr3_-_138313161_138313198	0.106249	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr8_+_103991013_103991127	0.106174	SOX3_SOX2	ENST00000517983.1|KB-1507C5.4|ENSG00000254281.1|KB-1507C5.4
hg19_v2_chr12_-_16760021_16760099	0.106171	SOX3_SOX2	ENST00000540445.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr13_+_39612442_39612482	0.106138	SOX3_SOX2	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr14_-_35099377_35099389	0.106014	SOX3_SOX2	ENST00000362031.4|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chrX_-_24665208_24665275	0.105769	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr9_-_103115185_103115235	0.10566	SOX3_SOX2	ENST00000374902.4|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr17_+_43238061_43238097	0.105613	SOX3_SOX2	ENST00000307275.3|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000585340.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chr1_-_145827015_145827103	0.10559	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr2_+_32288725_32288776	0.105581	SOX3_SOX2	ENST00000315285.3|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr16_+_21610797_21610850	0.105322	SOX3_SOX2	ENST00000358154.3|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_-_175204765_175204843	0.105311	SOX3_SOX2	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr1_+_162467595_162467655	0.105193	SOX3_SOX2	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chrX_-_38080077_38080177	0.105187	SOX3_SOX2	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr10_-_49482907_49482941	0.104938	SOX3_SOX2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr15_+_57210961_57211030	0.104914	SOX3_SOX2	ENST00000557843.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr5_-_157079428_157079452	0.104824	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr11_+_10772534_10772573	0.104573	SOX3_SOX2	ENST00000361367.2|CTR9|ENSG00000198730.3|CTR9, Paf1/RNA polymerase II complex component
hg19_v2_chr7_+_73868120_73868216	0.104518	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr1_+_100111479_100111499	0.1045	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr5_+_34656450_34656523	0.104451	SOX3_SOX2	ENST00000514527.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr5_-_146435501_146435537	0.104047	SOX3_SOX2	ENST00000336640.6|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr5_+_34656569_34656588	0.10371	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr14_+_96968802_96968895	0.103426	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr7_+_28725585_28725608	0.103267	SOX3_SOX2	ENST00000396298.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr15_-_60771280_60771351	0.103232	SOX3_SOX2	ENST00000560072.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560406.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000560520.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000261520.4|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000439632.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr20_+_3869562_3869581	0.103118	SOX3_SOX2	ENST00000495692.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr2_-_178128528_178128574	0.102992	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr19_-_5292781_5292801	0.102852	SOX3_SOX2	ENST00000586065.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chrX_-_47930980_47931034	0.102795	SOX3_SOX2	ENST00000442455.3|ZNF630|ENSG00000221994.6|zinc finger protein 630 	ENST00000428686.1|ZNF630|ENSG00000221994.6|zinc finger protein 630 	ENST00000276054.4|ZNF630|ENSG00000221994.6|zinc finger protein 630
hg19_v2_chrX_+_16737718_16737778	0.102397	SOX3_SOX2	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr12_+_49761273_49761330	0.102228	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr5_+_34656529_34656549	0.102198	SOX3_SOX2	ENST00000513974.1|RAI14|ENSG00000039560.9|retinoic acid induced 14 	ENST00000512629.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr16_-_46864955_46864980	0.102115	SOX3_SOX2	ENST00000565112.1|C16orf87|ENSG00000155330.5|chromosome 16 open reading frame 87
hg19_v2_chr9_-_5830768_5830787	0.101882	SOX3_SOX2	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr1_+_150122034_150122170	0.10077	SOX3_SOX2	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr17_-_14683517_14683523	0.100474	SOX3_SOX2	ENST00000379640.1|AC005863.1|ENSG00000205325.1|AC005863.1
hg19_v2_chr7_+_77166592_77166653	0.100462	SOX3_SOX2	ENST00000248594.6|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr4_+_52709229_52709345	0.100291	SOX3_SOX2	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr12_-_45270077_45270143	0.0999362	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chrX_-_13956497_13956536	0.0998152	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr11_+_63706444_63706486	0.0997035	SOX3_SOX2	ENST00000377793.4|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit 	ENST00000456907.2|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit 	ENST00000539656.1|NAA40|ENSG00000110583.8|N(alpha)-acetyltransferase 40, NatD catalytic subunit
hg19_v2_chr3_-_197025447_197025533	0.0996102	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr7_+_116312411_116312502	0.0994838	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr10_+_14920843_14920921	0.0993748	SOX3_SOX2	ENST00000433779.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000378325.3|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000354919.6|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000313519.5|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000420416.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila)
hg19_v2_chr15_+_86098670_86098685	0.0992582	SOX3_SOX2	ENST00000558811.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr3_-_69171708_69171723	0.099067	SOX3_SOX2	ENST00000420581.2|LMOD3|ENSG00000163380.11|leiomodin 3 (fetal)
hg19_v2_chr2_+_160590469_160590485	0.0989703	SOX3_SOX2	ENST00000409591.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr7_-_42951509_42951904	0.098805	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chrX_-_15683147_15683159	0.0988013	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr15_+_34310428_34310428	0.09871	SOX3_SOX2	ENST00000557872.1|CHRM5|ENSG00000184984.8|cholinergic receptor, muscarinic 5
hg19_v2_chr11_-_111649015_111649030	0.098651	SOX3_SOX2	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr17_+_27573875_27573881	0.0986159	SOX3_SOX2	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr12_-_71003568_71003629	0.0985077	SOX3_SOX2	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr19_-_37019562_37019593	0.0983813	SOX3_SOX2	ENST00000523638.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr5_-_111093081_111093111	0.0983123	SOX3_SOX2	ENST00000453526.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000509427.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr19_-_9695169_9695188	0.0982356	SOX3_SOX2	ENST00000586602.1|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr6_-_6711235_6711379	0.0981685	SOX3_SOX2	ENST00000432823.2|RP1-80N2.2|ENSG00000226281.2|RP1-80N2.2
hg19_v2_chr8_-_124279627_124279627	0.0978374	SOX3_SOX2	ENST00000357082.4|ZHX1-C8ORF76|ENSG00000259305.1|ZHX1-C8ORF76 readthrough
hg19_v2_chr3_+_152879985_152880038	0.0974561	SOX3_SOX2	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr6_-_75912508_75912580	0.0974541	SOX3_SOX2	ENST00000416123.2|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr20_-_17511962_17512033	0.0973608	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr1_+_39571026_39571117	0.0969728	SOX3_SOX2	ENST00000524432.1|MACF1|ENSG00000127603.19|microtubule-actin crosslinking factor 1
hg19_v2_chrX_-_117107542_117107677	0.0969091	SOX3_SOX2	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
hg19_v2_chr2_-_169769787_169769861	0.0968126	SOX3_SOX2	ENST00000451987.1|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr2_-_152955537_152955593	0.0967875	SOX3_SOX2	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr1_+_185126598_185126655	0.0965012	SOX3_SOX2	ENST00000450350.1|SWT1|ENSG00000116668.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
hg19_v2_chr2_+_30370382_30370421	0.0962696	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr9_-_27297126_27297140	0.0962646	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr19_+_21264943_21264965	0.096214	SOX3_SOX2	ENST00000597424.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr10_-_33246722_33246830	0.0960766	SOX3_SOX2	ENST00000437302.1|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 	ENST00000396033.2|ITGB1|ENSG00000150093.14|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
hg19_v2_chr8_-_144679602_144679617	0.0960492	SOX3_SOX2	ENST00000526710.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr12_-_122711968_122712008	0.0959913	SOX3_SOX2	ENST00000485724.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr7_-_151511911_151511962	0.0959066	SOX3_SOX2	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr12_-_88974236_88974256	0.0958161	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr13_-_31736478_31736525	0.0955279	SOX3_SOX2	ENST00000445273.2|HSPH1|ENSG00000120694.15|heat shock 105kDa/110kDa protein 1
hg19_v2_chr2_-_9771075_9771153	0.0954536	SOX3_SOX2	ENST00000446619.1|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 	ENST00000238081.3|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chrX_+_107069063_107069123	0.0954027	SOX3_SOX2	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr2_-_70475586_70475646	0.0953585	SOX3_SOX2	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr11_-_3400330_3400422	0.0952472	SOX3_SOX2	ENST00000427810.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000005082.9|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000534569.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000438262.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528796.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528410.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000529678.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000354599.6|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000526601.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000525502.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000533036.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000399602.4|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr2_+_191273052_191273121	0.0951604	SOX3_SOX2	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr10_-_99030395_99030434	0.0951542	SOX3_SOX2	ENST00000355366.5|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19 	ENST00000371027.1|ARHGAP19|ENSG00000213390.6|Rho GTPase activating protein 19
hg19_v2_chr2_+_71295766_71295792	0.0949376	SOX3_SOX2	ENST00000533981.1|NAGK|ENSG00000124357.8|N-acetylglucosamine kinase
hg19_v2_chr2_+_219524379_219524465	0.0948706	SOX3_SOX2	ENST00000443791.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000359273.3|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000392109.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000392110.2|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000423377.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000392111.2|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000412366.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like
hg19_v2_chr11_-_102714534_102714534	0.0947859	SOX3_SOX2	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr14_+_64971292_64971415	0.0947805	SOX3_SOX2	ENST00000358738.3|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1 	ENST00000394712.2|ZBTB1|ENSG00000126804.9|zinc finger and BTB domain containing 1
hg19_v2_chr12_-_46766577_46766650	0.0947344	SOX3_SOX2	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chrX_+_107068959_107068985	0.0945251	SOX3_SOX2	ENST00000451923.1|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr8_+_86376081_86376142	0.0942325	SOX3_SOX2	ENST00000285379.5|CA2|ENSG00000104267.5|carbonic anhydrase II
hg19_v2_chr1_+_32739714_32739730	0.0941418	SOX3_SOX2	ENST00000461712.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373562.3|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000477031.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase 	ENST00000373557.2|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chr16_+_2820912_2821032	0.0939988	SOX3_SOX2	ENST00000570539.1|SRRM2|ENSG00000167978.12|serine/arginine repetitive matrix 2
hg19_v2_chr14_+_32546145_32546239	0.093798	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr2_+_239756671_239756732	0.093733	SOX3_SOX2	ENST00000448943.2|TWIST2|ENSG00000233608.2|twist family bHLH transcription factor 2
hg19_v2_chr12_+_112204691_112204781	0.0936672	SOX3_SOX2	ENST00000416293.3|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial) 	ENST00000261733.2|ALDH2|ENSG00000111275.8|aldehyde dehydrogenase 2 family (mitochondrial)
hg19_v2_chr12_-_52845910_52845938	0.0935936	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr1_+_112298514_112298550	0.0931503	SOX3_SOX2	ENST00000536167.1|DDX20|ENSG00000064703.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
hg19_v2_chr4_+_76649753_76649777	0.0930779	SOX3_SOX2	ENST00000603759.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr11_-_102323740_102323780	0.092882	SOX3_SOX2	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr7_-_6388537_6388611	0.0928214	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr6_+_56954808_56954845	0.0925767	SOX3_SOX2	ENST00000510483.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370706.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000357489.3|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr11_-_85430163_85430200	0.0925198	SOX3_SOX2	ENST00000529581.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2 	ENST00000533577.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr6_-_26235206_26235224	0.0925051	SOX3_SOX2	ENST00000244534.5|HIST1H1D|ENSG00000124575.5|histone cluster 1, H1d
hg19_v2_chr1_+_235492300_235492344	0.0924592	SOX3_SOX2	ENST00000476121.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1 	ENST00000497327.1|GGPS1|ENSG00000152904.7|geranylgeranyl diphosphate synthase 1
hg19_v2_chr12_-_104531945_104531996	0.0924591	SOX3_SOX2	ENST00000551446.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr11_-_3400442_3400453	0.0923271	SOX3_SOX2	ENST00000429541.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000532539.1|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr7_+_134212312_134212344	0.0922825	SOX3_SOX2	ENST00000359579.4|AKR1B10|ENSG00000198074.5|aldo-keto reductase family 1, member B10 (aldose reductase)
hg19_v2_chr17_-_49198095_49198119	0.0922282	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr6_-_90062543_90062567	0.091872	SOX3_SOX2	ENST00000435041.2|UBE2J1|ENSG00000198833.6|ubiquitin-conjugating enzyme E2, J1
hg19_v2_chr14_-_22005018_22005040	0.0918298	SOX3_SOX2	ENST00000546363.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr3_+_130613226_130613485	0.0918132	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr12_-_76462713_76462773	0.0916627	SOX3_SOX2	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr1_-_23857698_23857733	0.0915854	SOX3_SOX2	ENST00000361729.2|E2F2|ENSG00000007968.6|E2F transcription factor 2
hg19_v2_chr4_-_83351005_83351019	0.0913189	SOX3_SOX2	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr18_+_3252265_3252284	0.0907926	SOX3_SOX2	ENST00000580887.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric 	ENST00000536605.1|MYL12A|ENSG00000101608.8|myosin, light chain 12A, regulatory, non-sarcomeric
hg19_v2_chr1_+_6673745_6673830	0.09068	SOX3_SOX2	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr6_+_32811885_32811915	0.0905536	SOX3_SOX2	ENST00000458296.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000413039.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000429600.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000412095.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1 	ENST00000395330.1|PSMB9|ENSG00000240065.3|proteasome (prosome, macropain) subunit, beta type, 9 	ENST00000415067.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr2_-_75796837_75796849	0.0903935	SOX3_SOX2	ENST00000233712.1|EVA1A|ENSG00000115363.9|eva-1 homolog A (C. elegans)
hg19_v2_chr12_-_89919220_89919392	0.0903222	SOX3_SOX2	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr5_-_39425068_39425098	0.0902395	SOX3_SOX2	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr4_+_15683404_15683432	0.0900753	SOX3_SOX2	ENST00000422728.2|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr16_-_11730213_11730238	0.0899812	SOX3_SOX2	ENST00000576334.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574848.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr12_-_118498911_118498924	0.0899099	SOX3_SOX2	ENST00000544233.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr19_+_42041860_42041936	0.0897573	SOX3_SOX2	ENST00000483481.2|AC006129.4|ENSG00000270164.1|AC006129.4	ENST00000494375.2|AC006129.4|ENSG00000270164.1|AC006129.4
hg19_v2_chr18_+_56532100_56532130	0.0895571	SOX3_SOX2	ENST00000588456.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589481.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000591049.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr10_+_135050908_135050908	0.089412	SOX3_SOX2	ENST00000325980.9|VENTX|ENSG00000151650.7|VENT homeobox
hg19_v2_chr7_+_16793160_16793160	0.0892011	SOX3_SOX2	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr11_-_2906979_2907111	0.0891608	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr14_-_50999307_50999367	0.0888978	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr7_-_151330218_151330259	0.0886996	SOX3_SOX2	ENST00000476632.1|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr13_-_24007815_24007872	0.0886866	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr18_+_32455201_32455314	0.088671	SOX3_SOX2	ENST00000590831.2|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr10_-_14613968_14614048	0.0886301	SOX3_SOX2	ENST00000488576.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000472095.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr9_-_74525847_74525847	0.088611	SOX3_SOX2	ENST00000377041.2|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr12_-_76817036_76817070	0.088554	SOX3_SOX2	ENST00000546946.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr11_-_66445219_66445392	0.0883307	SOX3_SOX2	ENST00000525754.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531969.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000524637.1|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000531036.2|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B 	ENST00000310046.4|RBM4B|ENSG00000173914.7|RNA binding motif protein 4B
hg19_v2_chr7_-_100487280_100487343	0.0880751	SOX3_SOX2	ENST00000388761.2|UFSP1|ENSG00000176125.3|UFM1-specific peptidase 1 (non-functional)
hg19_v2_chr1_+_244998602_244998646	0.0879308	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr2_-_198175495_198175525	0.0878131	SOX3_SOX2	ENST00000409153.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000409919.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44 	ENST00000539527.1|ANKRD44|ENSG00000065413.12|ankyrin repeat domain 44
hg19_v2_chr1_+_147400506_147400549	0.0876445	SOX3_SOX2	ENST00000314163.7|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B 	ENST00000468618.2|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B
hg19_v2_chr14_-_57960456_57960478	0.0875583	SOX3_SOX2	ENST00000534126.1|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105 	ENST00000422976.2|C14orf105|ENSG00000100557.5|chromosome 14 open reading frame 105
hg19_v2_chr13_-_110959478_110959511	0.0875507	SOX3_SOX2	ENST00000543140.1|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1 	ENST00000375820.4|COL4A1|ENSG00000187498.10|collagen, type IV, alpha 1
hg19_v2_chr1_-_182360498_182360541	0.0873867	SOX3_SOX2	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr2_-_10588630_10588646	0.0872689	SOX3_SOX2	ENST00000234111.4|ODC1|ENSG00000115758.8|ornithine decarboxylase 1
hg19_v2_chr7_+_26438187_26438351	0.0871449	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr3_-_56950407_56950499	0.0870858	SOX3_SOX2	ENST00000496106.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr8_+_39759794_39759899	0.0867849	SOX3_SOX2	ENST00000518804.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000519154.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522495.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1 	ENST00000522840.1|IDO1|ENSG00000131203.8|indoleamine 2,3-dioxygenase 1
hg19_v2_chr13_+_39612485_39612599	0.0867608	SOX3_SOX2	ENST00000379599.2|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chr18_+_18822185_18822213	0.0867269	SOX3_SOX2	ENST00000424526.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000400483.4|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000431264.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr1_+_109419596_109419640	0.0865898	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr13_-_99404875_99404942	0.0865625	SOX3_SOX2	ENST00000376503.5|SLC15A1|ENSG00000088386.11|solute carrier family 15 (oligopeptide transporter), member 1
hg19_v2_chr19_+_23299777_23299844	0.0865286	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr2_+_169312725_169312810	0.0864539	SOX3_SOX2	ENST00000392687.4|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr3_+_169629354_169629372	0.0862025	SOX3_SOX2	ENST00000428432.2|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7 	ENST00000335556.3|SAMD7|ENSG00000187033.5|sterile alpha motif domain containing 7
hg19_v2_chr18_-_64271316_64271334	0.0858637	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr10_-_25241499_25241541	0.0858284	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chrX_-_73512358_73512402	0.0856019	SOX3_SOX2	ENST00000602776.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr8_-_101965559_101965570	0.0855206	SOX3_SOX2	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr18_+_11851383_11851399	0.0853557	SOX3_SOX2	ENST00000526991.2|CHMP1B|ENSG00000255112.2|charged multivesicular body protein 1B
hg19_v2_chr1_-_228603694_228603730	0.0852774	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr6_+_80341000_80341025	0.0851278	SOX3_SOX2	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr1_+_93544821_93544868	0.0851033	SOX3_SOX2	ENST00000370303.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr12_-_6772303_6772314	0.085029	SOX3_SOX2	ENST00000396807.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000446105.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000341550.4|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chrX_+_100645812_100646008	0.0850018	SOX3_SOX2	ENST00000427805.2|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000553110.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000392994.3|RPL36A|ENSG00000241343.5|ribosomal protein L36a 	ENST00000409338.1|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough 	ENST00000409170.3|RPL36A-HNRNPH2|ENSG00000257529.1|RPL36A-HNRNPH2 readthrough
hg19_v2_chr14_-_21994525_21994634	0.0849926	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr16_-_65268795_65268836	0.0848187	SOX3_SOX2	ENST00000565901.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2	ENST00000567058.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2
hg19_v2_chr14_+_58754751_58754751	0.0846881	SOX3_SOX2	ENST00000598233.1|AL132989.1|ENSG00000268466.1|AL132989.1
hg19_v2_chr3_-_148804275_148804346	0.0846643	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr19_+_57106624_57106644	0.084587	SOX3_SOX2	ENST00000599599.1|ZNF71|ENSG00000197951.4|zinc finger protein 71
hg19_v2_chr11_-_82997371_82997416	0.0843947	SOX3_SOX2	ENST00000525503.1|CCDC90B|ENSG00000137500.5|coiled-coil domain containing 90B
hg19_v2_chr3_+_107244229_107244254	0.0841768	SOX3_SOX2	ENST00000456419.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402163.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr2_+_113735575_113735606	0.0841714	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr2_+_127413677_127413703	0.0841106	SOX3_SOX2	ENST00000356887.7|GYPC|ENSG00000136732.10|glycophorin C (Gerbich blood group)
hg19_v2_chr4_+_184365744_184365797	0.084095	SOX3_SOX2	ENST00000504169.1|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein 	ENST00000302350.4|CDKN2AIP|ENSG00000168564.5|CDKN2A interacting protein
hg19_v2_chr14_+_75746664_75746683	0.0840309	SOX3_SOX2	ENST00000557139.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr10_+_97759848_97759883	0.0840308	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr3_+_31574189_31574282	0.0839162	SOX3_SOX2	ENST00000295770.2|STT3B|ENSG00000163527.5|STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chrX_+_100646190_100646266	0.0838901	SOX3_SOX2	ENST00000471855.1|RPL36A|ENSG00000241343.5|ribosomal protein L36a
hg19_v2_chr7_+_30067973_30068063	0.0837989	SOX3_SOX2	ENST00000258679.7|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000449726.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396257.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 	ENST00000396259.1|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr14_-_73493825_73493920	0.0836887	SOX3_SOX2	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr14_+_91580357_91580454	0.0834032	SOX3_SOX2	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr17_+_44803922_44803922	0.0832767	SOX3_SOX2	ENST00000465370.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr3_-_183735651_183735727	0.0832304	SOX3_SOX2	ENST00000427120.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000392579.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000382494.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENST00000446941.2|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr12_-_114211474_114211499	0.0832124	SOX3_SOX2	ENST00000550905.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000547963.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr6_-_72130472_72130519	0.0831333	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr4_+_71587669_71587752	0.0829116	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr5_+_43603229_43603356	0.0828896	SOX3_SOX2	ENST00000344920.4|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase 	ENST00000512996.2|NNT|ENSG00000112992.12|nicotinamide nucleotide transhydrogenase
hg19_v2_chr20_-_1165117_1165117	0.0828746	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr15_-_64995399_64995480	0.0826446	SOX3_SOX2	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr6_+_44215603_44215666	0.0825676	SOX3_SOX2	ENST00000371554.1|HSP90AB1|ENSG00000096384.15|heat shock protein 90kDa alpha (cytosolic), class B member 1
hg19_v2_chr13_+_26828275_26828312	0.0825535	SOX3_SOX2	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr18_+_9885934_9885943	0.0825023	SOX3_SOX2	ENST00000357775.5|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr2_+_201981663_201981762	0.0824782	SOX3_SOX2	ENST00000433445.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr5_-_111093167_111093252	0.0824316	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr8_-_18871159_18871201	0.0823324	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr6_+_90192974_90193122	0.08232	SOX3_SOX2	ENST00000520458.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr8_+_144718171_144718332	0.0823185	SOX3_SOX2	ENST00000526926.1|ZNF623|ENSG00000183309.7|zinc finger protein 623 	ENST00000458270.2|ZNF623|ENSG00000183309.7|zinc finger protein 623
hg19_v2_chr10_-_72142345_72142395	0.0822791	SOX3_SOX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr9_+_103189536_103189601	0.0822741	SOX3_SOX2	ENST00000374885.1|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr14_+_77228532_77228672	0.081944	SOX3_SOX2	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr1_-_200379129_200379174	0.0818101	SOX3_SOX2	ENST00000367353.1|ZNF281|ENSG00000162702.7|zinc finger protein 281
hg19_v2_chr7_+_77167376_77167395	0.0817062	SOX3_SOX2	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr2_+_210444748_210444770	0.0816566	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr2_+_192109911_192110170	0.0816187	SOX3_SOX2	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr10_-_61122934_61122940	0.0814773	SOX3_SOX2	ENST00000512919.1|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr3_+_48507621_48507689	0.081426	SOX3_SOX2	ENST00000456089.1|TREX1|ENSG00000213689.5|three prime repair exonuclease 1
hg19_v2_chr19_+_21264980_21265026	0.0813795	SOX3_SOX2	ENST00000596053.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000597086.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596143.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596367.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000601416.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr11_+_76092353_76092400	0.0812101	SOX3_SOX2	ENST00000530460.1|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA. 	ENST00000321844.4|RP11-111M22.2|ENSG00000179240.4|Homo sapiens putative uncharacterized protein FLJ37770-like (LOC100506127), mRNA.
hg19_v2_chr2_+_192110199_192110254	0.0811046	SOX3_SOX2	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr19_-_55691472_55691551	0.0810017	SOX3_SOX2	ENST00000537500.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr12_-_10282836_10282863	0.0809746	SOX3_SOX2	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr2_-_178128250_178128300	0.0808531	SOX3_SOX2	ENST00000448782.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000446151.2|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr9_+_71789133_71789220	0.0808033	SOX3_SOX2	ENST00000348208.4|TJP2|ENSG00000119139.12|tight junction protein 2 	ENST00000265384.7|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr13_+_111767650_111767874	0.0806209	SOX3_SOX2	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr3_+_69985734_69985754	0.0805602	SOX3_SOX2	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr3_+_15643245_15643318	0.0804066	SOX3_SOX2	ENST00000303498.5|BTD|ENSG00000169814.8|biotinidase 	ENST00000437172.1|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr1_+_47799542_47799624	0.080265	SOX3_SOX2	ENST00000471289.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 	ENST00000450808.2|CMPK1|ENSG00000162368.9|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
hg19_v2_chr9_-_86595105_86595184	0.080104	SOX3_SOX2	ENST00000457156.1|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000360384.5|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K 	ENST00000376263.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr16_+_68573640_68573698	0.0800927	SOX3_SOX2	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr5_+_15500280_15500312	0.0800641	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr11_-_123525648_123525714	0.0800105	SOX3_SOX2	ENST00000527836.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr7_-_148787768_148787874	0.0798533	SOX3_SOX2	ENST00000491431.1|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000451334.3|ZNF786|ENSG00000197362.9|zinc finger protein 786 	ENST00000316286.9|ZNF786|ENSG00000197362.9|zinc finger protein 786
hg19_v2_chr14_-_45603657_45603732	0.0797831	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chr9_+_96846740_96846767	0.0796893	SOX3_SOX2	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr1_-_46598284_46598356	0.0796692	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr8_+_95653302_95653364	0.0796688	SOX3_SOX2	ENST00000423620.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1 	ENST00000433389.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr14_+_77882741_77882741	0.07961	SOX3_SOX2	ENST00000595520.1|FKSG61|ENSG00000268156.1|FKSG61
hg19_v2_chr5_-_146833222_146833261	0.0795769	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr18_+_56531584_56531646	0.0794641	SOX3_SOX2	ENST00000590287.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr5_+_170288856_170288920	0.0794502	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr20_+_60698180_60698208	0.0793877	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr3_+_130613001_130613078	0.0792319	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr5_+_179921344_179921423	0.0791787	SOX3_SOX2	ENST00000261951.4|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chrX_-_128977364_128977436	0.079028	SOX3_SOX2	ENST00000371064.3|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr10_-_13544945_13544976	0.0790099	SOX3_SOX2	ENST00000378605.3|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000341083.3|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr12_+_57522692_57522751	0.0789553	SOX3_SOX2	ENST00000554174.1|LRP1|ENSG00000123384.9|low density lipoprotein receptor-related protein 1
hg19_v2_chr4_+_15683369_15683390	0.0788842	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr9_-_125693757_125693818	0.0788088	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr6_-_30815936_30816035	0.0784742	SOX3_SOX2	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr12_+_104359641_104359689	0.0782872	SOX3_SOX2	ENST00000537100.1|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr2_-_9770706_9770753	0.0782815	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr18_+_32558380_32558399	0.078277	SOX3_SOX2	ENST00000588349.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr1_-_41487415_41487426	0.0782179	SOX3_SOX2	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr15_-_43398274_43398318	0.0780324	SOX3_SOX2	ENST00000382177.2|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1 	ENST00000290650.4|UBR1|ENSG00000159459.7|ubiquitin protein ligase E3 component n-recognin 1
hg19_v2_chr2_-_54197915_54197977	0.077923	SOX3_SOX2	ENST00000404125.1|PSME4|ENSG00000068878.10|proteasome (prosome, macropain) activator subunit 4
hg19_v2_chr5_-_150284351_150284443	0.0777964	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chrX_+_155227246_155227335	0.0776856	SOX3_SOX2	ENST00000244174.5|IL9R|ENSG00000124334.12|interleukin 9 receptor 	ENST00000424344.3|IL9R|ENSG00000124334.12|interleukin 9 receptor
hg19_v2_chr1_-_49242553_49242590	0.0775099	SOX3_SOX2	ENST00000371833.3|BEND5|ENSG00000162373.8|BEN domain containing 5
hg19_v2_chr1_+_69521581_69521593	0.0773412	SOX3_SOX2	ENST00000425517.1|RP11-424D14.1|ENSG00000223883.1|RP11-424D14.1
hg19_v2_chr5_+_113769205_113769227	0.0773031	SOX3_SOX2	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr9_-_92051391_92051403	0.0771922	SOX3_SOX2	ENST00000420681.2|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr5_+_125758865_125758876	0.0771794	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr7_-_99679324_99679371	0.0771666	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr14_+_32798462_32798539	0.0768771	SOX3_SOX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr12_+_104680659_104680777	0.0767668	SOX3_SOX2	ENST00000526691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531691.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000388854.3|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000354940.6|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526390.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000531689.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr1_-_217311090_217311097	0.0767464	SOX3_SOX2	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr1_-_23495303_23495338	0.0766555	SOX3_SOX2	ENST00000314174.5|LUZP1|ENSG00000169641.9|leucine zipper protein 1 	ENST00000471849.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr3_-_8686479_8686486	0.0766333	SOX3_SOX2	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr10_-_99393208_99393237	0.0765922	SOX3_SOX2	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr1_-_173174681_173174702	0.0761381	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr3_+_149531607_149531651	0.0761316	SOX3_SOX2	ENST00000468648.1|RNF13|ENSG00000082996.15|ring finger protein 13 	ENST00000459632.1|RNF13|ENSG00000082996.15|ring finger protein 13
hg19_v2_chr1_+_24286287_24286326	0.0758154	SOX3_SOX2	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr16_+_67063142_67063153	0.0757862	SOX3_SOX2	ENST00000412916.2|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr4_+_113152881_113152912	0.075711	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr8_+_95653373_95653415	0.0756616	SOX3_SOX2	ENST00000358397.5|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chrX_+_105936982_105937024	0.075644	SOX3_SOX2	ENST00000418562.1|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr8_+_94929969_94929980	0.0755377	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr5_+_157158205_157158205	0.0755311	SOX3_SOX2	ENST00000231198.7|THG1L|ENSG00000113272.9|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
hg19_v2_chr9_+_19408999_19409057	0.0753031	SOX3_SOX2	ENST00000340967.2|ACER2|ENSG00000177076.4|alkaline ceramidase 2
hg19_v2_chr2_+_33172221_33172369	0.0752154	SOX3_SOX2	ENST00000354476.3|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr8_-_20161466_20161481	0.0751529	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr7_+_112262421_112262447	0.0751356	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr21_+_38445539_38445596	0.0749575	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr7_+_56119323_56119492	0.0748878	SOX3_SOX2	ENST00000275603.4|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000335503.3|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1) 	ENST00000540286.1|CCT6A|ENSG00000146731.6|chaperonin containing TCP1, subunit 6A (zeta 1)
hg19_v2_chr16_+_67063036_67063088	0.0748454	SOX3_SOX2	ENST00000290858.6|CBFB|ENSG00000067955.9|core-binding factor, beta subunit 	ENST00000564034.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr2_-_208890218_208890289	0.0748234	SOX3_SOX2	ENST00000457206.1|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3 	ENST00000427836.2|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3 	ENST00000389247.4|PLEKHM3|ENSG00000178385.9|pleckstrin homology domain containing, family M, member 3
hg19_v2_chr11_+_65265141_65265306	0.0748187	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chr12_-_117628333_117628339	0.0745437	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr12_-_46662888_46662910	0.0745148	SOX3_SOX2	ENST00000546893.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chr7_+_12726474_12726542	0.0745046	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr10_-_35104185_35104267	0.0744442	SOX3_SOX2	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr10_-_62704005_62704045	0.0744008	SOX3_SOX2	ENST00000337910.5|RHOBTB1|ENSG00000072422.12|Rho-related BTB domain containing 1
hg19_v2_chr15_-_45493289_45493373	0.0739616	SOX3_SOX2	ENST00000561278.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F 	ENST00000290894.8|SHF|ENSG00000138606.15|Src homology 2 domain containing F
hg19_v2_chr21_-_40720974_40720994	0.0739257	SOX3_SOX2	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr8_-_22014339_22014345	0.0738856	SOX3_SOX2	ENST00000306317.2|LGI3|ENSG00000168481.4|leucine-rich repeat LGI family, member 3
hg19_v2_chr12_+_99038998_99039078	0.0737948	SOX3_SOX2	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr6_-_160210604_160210641	0.0737484	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr2_-_157189180_157189290	0.0734509	SOX3_SOX2	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr1_+_93544791_93544807	0.0734166	SOX3_SOX2	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr14_+_95078714_95078739	0.0732968	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr12_-_45270151_45270162	0.0732078	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr6_-_35656685_35656701	0.0731433	SOX3_SOX2	ENST00000539068.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000540787.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chr18_-_74844713_74844725	0.0729177	SOX3_SOX2	ENST00000397860.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr5_-_171881362_171881397	0.0725438	SOX3_SOX2	ENST00000519643.1|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr1_+_54411995_54412063	0.0724988	SOX3_SOX2	ENST00000319223.4|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000444987.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr3_+_155588375_155588512	0.0724983	SOX3_SOX2	ENST00000295920.7|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr6_+_18387570_18387588	0.0724247	SOX3_SOX2	ENST00000259939.3|RNF144B|ENSG00000137393.8|ring finger protein 144B
hg19_v2_chr15_+_52043813_52043864	0.0723886	SOX3_SOX2	ENST00000435126.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chrX_+_17653413_17653413	0.0723849	SOX3_SOX2	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr8_+_86019382_86019487	0.0722182	SOX3_SOX2	ENST00000360375.3|LRRCC1|ENSG00000133739.11|leucine rich repeat and coiled-coil centrosomal protein 1
hg19_v2_chr4_-_48908737_48908799	0.0721819	SOX3_SOX2	ENST00000381464.2|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr4_-_103266355_103266371	0.0721368	SOX3_SOX2	ENST00000424970.2|SLC39A8|ENSG00000138821.8|solute carrier family 39 (zinc transporter), member 8
hg19_v2_chr15_-_49338624_49338700	0.0719908	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr11_+_63137251_63137280	0.0718438	SOX3_SOX2	ENST00000310969.4|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9 	ENST00000279178.3|SLC22A9|ENSG00000149742.5|solute carrier family 22 (organic anion transporter), member 9
hg19_v2_chr4_+_113558612_113558669	0.0717991	SOX3_SOX2	ENST00000505034.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7 	ENST00000324052.6|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr12_+_104680793_104680837	0.0717914	SOX3_SOX2	ENST00000529546.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000529751.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000540716.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000528079.2|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1 	ENST00000526580.1|TXNRD1|ENSG00000198431.11|thioredoxin reductase 1
hg19_v2_chr18_-_9614863_9614898	0.0714729	SOX3_SOX2	ENST00000584074.1|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr14_-_35099315_35099369	0.0714381	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr5_+_130599701_130599716	0.0714069	SOX3_SOX2	ENST00000395246.1|CDC42SE2|ENSG00000158985.9|CDC42 small effector 2
hg19_v2_chr7_+_93690435_93690467	0.0714052	SOX3_SOX2	ENST00000438538.1|AC003092.1|ENSG00000236453.1|AC003092.1
hg19_v2_chr10_-_14614095_14614112	0.0712854	SOX3_SOX2	ENST00000482277.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378462.1|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr12_-_122017542_122017578	0.0712815	SOX3_SOX2	ENST00000446152.2|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr3_+_112930306_112930338	0.0709993	SOX3_SOX2	ENST00000495514.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr2_-_224903995_224904036	0.0709749	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr17_-_34890037_34890055	0.0708643	SOX3_SOX2	ENST00000589404.1|MYO19|ENSG00000141140.12|myosin XIX
hg19_v2_chr8_+_21777243_21777275	0.0707282	SOX3_SOX2	ENST00000521303.1|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chrX_-_119603138_119603220	0.0706742	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr7_+_44836276_44836283	0.070599	SOX3_SOX2	ENST00000451562.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000468812.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000489459.1|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A) 	ENST00000355968.6|PPIA|ENSG00000196262.9|peptidylprolyl isomerase A (cyclophilin A)
hg19_v2_chr20_+_3870024_3870072	0.0705796	SOX3_SOX2	ENST00000610179.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr12_-_133707021_133707071	0.0704649	SOX3_SOX2	ENST00000537226.1|ZNF891|ENSG00000214029.3|zinc finger protein 891
hg19_v2_chr1_-_28520384_28520393	0.0703639	SOX3_SOX2	ENST00000305392.3|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr12_-_56352368_56352387	0.0703322	SOX3_SOX2	ENST00000549404.1|PMEL|ENSG00000185664.10|premelanosome protein
hg19_v2_chr12_-_48213568_48213695	0.070085	SOX3_SOX2	ENST00000080059.7|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000354334.3|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000430670.1|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000552960.1|HDAC7|ENSG00000061273.13|histone deacetylase 7 	ENST00000440293.1|HDAC7|ENSG00000061273.13|histone deacetylase 7
hg19_v2_chr22_-_44894178_44894203	0.0700292	SOX3_SOX2	ENST00000341255.3|LDOC1L|ENSG00000188636.3|leucine zipper, down-regulated in cancer 1-like
hg19_v2_chr14_+_63671105_63671126	0.0699998	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr8_+_42873548_42873567	0.0699787	SOX3_SOX2	ENST00000533338.1|HOOK3|ENSG00000168172.4|hook microtubule-tethering protein 3 	ENST00000534420.1|RP11-598P20.5|ENSG00000254673.1|Uncharacterized protein
hg19_v2_chr11_-_236326_236431	0.0699585	SOX3_SOX2	ENST00000525237.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000532956.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000525319.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000524564.1|SIRT3|ENSG00000142082.10|sirtuin 3 	ENST00000382743.4|SIRT3|ENSG00000142082.10|sirtuin 3
hg19_v2_chr12_-_8815299_8815331	0.0699348	SOX3_SOX2	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr3_+_113616317_113616364	0.0697896	SOX3_SOX2	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr10_-_91174215_91174314	0.0697878	SOX3_SOX2	ENST00000371837.1|LIPA|ENSG00000107798.13|lipase A, lysosomal acid, cholesterol esterase
hg19_v2_chrX_+_107288197_107288212	0.0697762	SOX3_SOX2	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr1_-_153643442_153643524	0.0697342	SOX3_SOX2	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr19_-_23941639_23941672	0.0696531	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr1_-_65432171_65432252	0.0695944	SOX3_SOX2	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr22_-_39052300_39052336	0.0695834	SOX3_SOX2	ENST00000355830.6|FAM227A|ENSG00000184949.11|family with sequence similarity 227, member A
hg19_v2_chr1_-_154155595_154155673	0.0694355	SOX3_SOX2	ENST00000328159.4|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368531.2|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000323144.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368533.3|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341372.3|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr5_+_137514403_137514418	0.0694004	SOX3_SOX2	ENST00000513276.1|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr1_+_236305826_236305877	0.0693137	SOX3_SOX2	ENST00000366592.3|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B 	ENST00000366591.4|GPR137B|ENSG00000077585.9|G protein-coupled receptor 137B
hg19_v2_chr11_+_32112431_32112454	0.0691343	SOX3_SOX2	ENST00000054950.3|RCN1|ENSG00000049449.4|reticulocalbin 1, EF-hand calcium binding domain
hg19_v2_chr11_-_67981295_67981334	0.0689825	SOX3_SOX2	ENST00000405515.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr4_-_87770416_87770508	0.0689263	SOX3_SOX2	ENST00000273905.6|SLC10A6|ENSG00000145283.7|solute carrier family 10 (sodium/bile acid cotransporter), member 6
hg19_v2_chr2_+_10263298_10263329	0.0688146	SOX3_SOX2	ENST00000474701.1|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr4_-_170192185_170192256	0.0687871	SOX3_SOX2	ENST00000284637.9|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr4_+_76649797_76650004	0.0687093	SOX3_SOX2	ENST00000538159.1|USO1|ENSG00000138768.10|USO1 vesicle transport factor 	ENST00000514213.2|USO1|ENSG00000138768.10|USO1 vesicle transport factor
hg19_v2_chr4_-_83351294_83351417	0.0686267	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr7_+_5938351_5938379	0.0686186	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr1_+_205682497_205682497	0.0685561	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr15_-_50647347_50647366	0.0681899	SOX3_SOX2	ENST00000220429.8|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000429662.2|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr15_+_57211318_57211355	0.0681266	SOX3_SOX2	ENST00000557947.1|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr4_+_78079450_78079563	0.0680998	SOX3_SOX2	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr12_-_49582837_49582875	0.0679753	SOX3_SOX2	ENST00000547939.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000546918.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000552924.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr4_+_175204818_175204833	0.0679671	SOX3_SOX2	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr1_-_156217822_156217823	0.0679207	SOX3_SOX2	ENST00000368270.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr5_+_175792459_175792513	0.0679123	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr1_+_200708671_200708744	0.0678918	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr19_-_17375541_17375605	0.067773	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr17_+_31255023_31255089	0.0677683	SOX3_SOX2	ENST00000395149.2|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000261713.4|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr11_-_95522639_95522725	0.0677511	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr1_+_10459433_10459689	0.0676836	SOX3_SOX2	ENST00000465632.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000460189.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr5_+_82767583_82767744	0.0675696	SOX3_SOX2	ENST00000512590.2|VCAN|ENSG00000038427.11|versican 	ENST00000513960.1|VCAN|ENSG00000038427.11|versican 	ENST00000513984.1|VCAN|ENSG00000038427.11|versican 	ENST00000502527.2|VCAN|ENSG00000038427.11|versican
hg19_v2_chr19_+_20011744_20011770	0.0673732	SOX3_SOX2	ENST00000588146.1|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr21_-_34143971_34143983	0.0673115	SOX3_SOX2	ENST00000290178.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr8_-_30515693_30515776	0.067244	SOX3_SOX2	ENST00000355904.4|GTF2E2|ENSG00000197265.4|general transcription factor IIE, polypeptide 2, beta 34kDa
hg19_v2_chr18_+_55888767_55888809	0.067198	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr6_+_83777374_83777456	0.0670482	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chr11_-_2162468_2162497	0.0670431	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr4_-_10458982_10459007	0.0668069	SOX3_SOX2	ENST00000326756.3|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr8_+_104831472_104831510	0.0667219	SOX3_SOX2	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr14_+_54976603_54976676	0.066714	SOX3_SOX2	ENST00000557317.1|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr3_+_130612803_130612877	0.0665834	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr4_-_174320687_174320687	0.066574	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr20_-_44007014_44007033	0.0664668	SOX3_SOX2	ENST00000372726.3|TP53TG5|ENSG00000124251.6|TP53 target 5 	ENST00000537995.1|TP53TG5|ENSG00000124251.6|TP53 target 5
hg19_v2_chr4_-_88141755_88141791	0.0664202	SOX3_SOX2	ENST00000273963.5|KLHL8|ENSG00000145332.9|kelch-like family member 8
hg19_v2_chr3_+_141596371_141596516	0.0662491	SOX3_SOX2	ENST00000495216.1|ATP1B3|ENSG00000069849.6|ATPase, Na+/K+ transporting, beta 3 polypeptide
hg19_v2_chr8_-_101962777_101962805	0.0661618	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr2_-_48132814_48132917	0.0661029	SOX3_SOX2	ENST00000316377.4|FBXO11|ENSG00000138081.15|F-box protein 11 	ENST00000378314.3|FBXO11|ENSG00000138081.15|F-box protein 11
hg19_v2_chr6_-_128841503_128841870	0.0660928	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr1_-_153538292_153538342	0.06603	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr1_-_151032040_151032125	0.0660126	SOX3_SOX2	ENST00000540998.1|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1 	ENST00000357235.5|CDC42SE1|ENSG00000197622.8|CDC42 small effector 1
hg19_v2_chr10_-_65028938_65028989	0.0658848	SOX3_SOX2	ENST00000402544.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr5_+_179921430_179921461	0.065883	SOX3_SOX2	ENST00000393356.1|CNOT6|ENSG00000113300.7|CCR4-NOT transcription complex, subunit 6
hg19_v2_chr6_+_134758827_134758863	0.0658807	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr20_+_44036900_44036984	0.0658141	SOX3_SOX2	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chrX_-_43832711_43832750	0.0657383	SOX3_SOX2	ENST00000378062.5|NDP|ENSG00000124479.8|Norrie disease (pseudoglioma)
hg19_v2_chr4_-_110624564_110624739	0.0657072	SOX3_SOX2	ENST00000352981.3|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000265164.2|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase 	ENST00000505486.1|CASP6|ENSG00000138794.5|caspase 6, apoptosis-related cysteine peptidase
hg19_v2_chr1_-_53018654_53018777	0.0655796	SOX3_SOX2	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr5_-_168006324_168006400	0.0654167	SOX3_SOX2	ENST00000522176.1|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr1_-_235813290_235813323	0.0653873	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr11_-_6677018_6677085	0.0653433	SOX3_SOX2	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr1_+_33231221_33231241	0.0652386	SOX3_SOX2	ENST00000294521.3|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr2_+_114647504_114647557	0.0652245	SOX3_SOX2	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr19_+_38880252_38880252	0.0651834	SOX3_SOX2	ENST00000586301.1|SPRED3|ENSG00000188766.8|sprouty-related, EVH1 domain containing 3
hg19_v2_chr12_-_76879852_76879888	0.0651511	SOX3_SOX2	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr3_-_49459865_49459876	0.0651354	SOX3_SOX2	ENST00000427987.1|AMT|ENSG00000145020.10|aminomethyltransferase
hg19_v2_chr12_-_129308487_129308588	0.0650411	SOX3_SOX2	ENST00000266771.5|SLC15A4|ENSG00000139370.6|solute carrier family 15 (oligopeptide transporter), member 4
hg19_v2_chr8_-_29940464_29940486	0.0649946	SOX3_SOX2	ENST00000521265.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000536273.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr7_-_76829125_76829143	0.0649364	SOX3_SOX2	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr5_+_70751442_70751456	0.0648461	SOX3_SOX2	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chr1_+_100818009_100818072	0.0648347	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr3_+_23847432_23847512	0.0648266	SOX3_SOX2	ENST00000346855.3|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr5_+_138089100_138089146	0.0647528	SOX3_SOX2	ENST00000520339.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000355078.5|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000302763.7|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa 	ENST00000518910.1|CTNNA1|ENSG00000044115.16|catenin (cadherin-associated protein), alpha 1, 102kDa
hg19_v2_chr3_-_27525826_27525840	0.0646968	SOX3_SOX2	ENST00000454389.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000440156.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000437179.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000446700.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000455077.1|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000435667.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000388777.4|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7 	ENST00000425128.2|SLC4A7|ENSG00000033867.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
hg19_v2_chr1_-_11863171_11863302	0.0645835	SOX3_SOX2	ENST00000376592.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr15_-_42186248_42186275	0.0645299	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr2_+_228337079_228337092	0.0645201	SOX3_SOX2	ENST00000409315.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000373671.3|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000409171.1|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr4_+_39046615_39046680	0.0643765	SOX3_SOX2	ENST00000261425.3|KLHL5|ENSG00000109790.12|kelch-like family member 5 	ENST00000508137.2|KLHL5|ENSG00000109790.12|kelch-like family member 5
hg19_v2_chr17_+_74864476_74864592	0.0641778	SOX3_SOX2	ENST00000301618.4|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 	ENST00000569840.2|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
hg19_v2_chr10_+_102759045_102759233	0.0641509	SOX3_SOX2	ENST00000370220.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr22_+_19702069_19702198	0.0638996	SOX3_SOX2	ENST00000412544.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr8_+_86121448_86121494	0.063855	SOX3_SOX2	ENST00000520225.1|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr15_+_63796779_63796863	0.0638213	SOX3_SOX2	ENST00000561442.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000560070.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000540797.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000380324.3|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000268049.7|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000536001.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3 	ENST00000539772.1|USP3|ENSG00000140455.12|ubiquitin specific peptidase 3
hg19_v2_chr1_+_226250379_226250427	0.0637341	SOX3_SOX2	ENST00000366815.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A 	ENST00000366814.3|H3F3A|ENSG00000163041.5|H3 histone, family 3A
hg19_v2_chr14_-_104028595_104028677	0.0636383	SOX3_SOX2	ENST00000337322.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000445922.2|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chrX_+_107288239_107288259	0.0636249	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr17_+_40985407_40985513	0.0635883	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr20_+_10415931_10416011	0.0635612	SOX3_SOX2	ENST00000334534.5|SLX4IP|ENSG00000149346.10|SLX4 interacting protein
hg19_v2_chrX_+_84499081_84499115	0.0635599	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr13_-_31038370_31038509	0.0635313	SOX3_SOX2	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr3_-_142608001_142608053	0.0633782	SOX3_SOX2	ENST00000295992.3|PCOLCE2|ENSG00000163710.3|procollagen C-endopeptidase enhancer 2
hg19_v2_chr6_-_35656712_35656723	0.0633696	SOX3_SOX2	ENST00000357266.4|FKBP5|ENSG00000096060.10|FK506 binding protein 5 	ENST00000542713.1|FKBP5|ENSG00000096060.10|FK506 binding protein 5
hg19_v2_chrX_+_46404928_46404964	0.0633223	SOX3_SOX2	ENST00000421685.2|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head) 	ENST00000609887.1|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head)
hg19_v2_chr6_+_30594619_30594665	0.0632844	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr12_-_56615485_56615685	0.0632527	SOX3_SOX2	ENST00000549038.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552244.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr5_+_154173697_154173770	0.0632524	SOX3_SOX2	ENST00000518742.1|LARP1|ENSG00000155506.12|La ribonucleoprotein domain family, member 1
hg19_v2_chr15_-_49338748_49338765	0.0630935	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr14_+_96968707_96968788	0.0630322	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr7_+_106810165_106810374	0.0630203	SOX3_SOX2	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr7_+_139528952_139529038	0.0630061	SOX3_SOX2	ENST00000416849.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000436047.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000414508.2|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet) 	ENST00000448866.1|TBXAS1|ENSG00000059377.11|thromboxane A synthase 1 (platelet)
hg19_v2_chr19_+_11649532_11649674	0.0629936	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr11_+_114168085_114168222	0.0628303	SOX3_SOX2	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr14_+_58797974_58798011	0.0627757	SOX3_SOX2	ENST00000417477.2|ARID4A|ENSG00000032219.14|AT rich interactive domain 4A (RBP1-like)
hg19_v2_chr10_+_27793197_27793247	0.062675	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr4_+_154125565_154125626	0.0626208	SOX3_SOX2	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr5_+_6766004_6766038	0.0624459	SOX3_SOX2	ENST00000506093.1|RP11-332J15.3|ENSG00000251365.1|RP11-332J15.3
hg19_v2_chr14_-_104029013_104029168	0.0624457	SOX3_SOX2	ENST00000299204.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000557666.1|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr13_+_45694583_45694696	0.0624434	SOX3_SOX2	ENST00000340473.6|GTF2F2|ENSG00000188342.7|general transcription factor IIF, polypeptide 2, 30kDa
hg19_v2_chr4_-_83350580_83350600	0.0623948	SOX3_SOX2	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr12_-_46384334_46384367	0.0623836	SOX3_SOX2	ENST00000369367.3|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000266589.6|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395453.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395454.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11
hg19_v2_chr19_-_37958318_37958365	0.0623717	SOX3_SOX2	ENST00000316950.6|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000591710.1|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr1_-_11863571_11863603	0.0623408	SOX3_SOX2	ENST00000376583.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr1_-_155177677_155177739	0.0623268	SOX3_SOX2	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr5_+_128795958_128796012	0.0622113	SOX3_SOX2	ENST00000274487.4|ADAMTS19|ENSG00000145808.4|ADAM metallopeptidase with thrombospondin type 1 motif, 19
hg19_v2_chr18_-_29340827_29340845	0.0622074	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr7_-_8302207_8302242	0.0621575	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr9_-_117880477_117880536	0.0621233	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr15_+_96869165_96869183	0.0620291	SOX3_SOX2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr13_-_60737898_60737910	0.0619365	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chrX_-_16730688_16730814	0.0617329	SOX3_SOX2	ENST00000359276.4|CTPS2|ENSG00000047230.10|CTP synthase 2
hg19_v2_chr11_-_111781554_111781584	0.0616371	SOX3_SOX2	ENST00000526167.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000528961.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr18_+_21719018_21719061	0.061586	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr14_+_24439148_24439196	0.0612374	SOX3_SOX2	ENST00000543805.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2 	ENST00000534993.1|DHRS4L2|ENSG00000187630.10|dehydrogenase/reductase (SDR family) member 4 like 2
hg19_v2_chr14_-_31676674_31676707	0.060992	SOX3_SOX2	ENST00000399332.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1 	ENST00000556224.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr16_-_85146040_85146114	0.0609836	SOX3_SOX2	ENST00000539556.1|FAM92B|ENSG00000153789.8|family with sequence similarity 92, member B
hg19_v2_chr16_+_67063262_67063364	0.060957	SOX3_SOX2	ENST00000565389.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr14_-_31495569_31495636	0.060835	SOX3_SOX2	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr7_-_142583478_142583496	0.0607028	SOX3_SOX2	ENST00000436401.1|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr11_-_71752571_71752598	0.060669	SOX3_SOX2	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr1_+_93913665_93913705	0.0605402	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr2_+_149402553_149402568	0.0604818	SOX3_SOX2	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr4_+_141445311_141445332	0.0603477	SOX3_SOX2	ENST00000323570.3|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2 	ENST00000511887.2|ELMOD2|ENSG00000179387.5|ELMO/CED-12 domain containing 2
hg19_v2_chr16_+_88636875_88636886	0.0602713	SOX3_SOX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chrX_-_131352152_131352204	0.0602419	SOX3_SOX2	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr1_+_174670143_174670160	0.0602108	SOX3_SOX2	ENST00000367687.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like 	ENST00000347255.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr1_-_53793725_53793789	0.0601837	SOX3_SOX2	ENST00000371454.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr12_-_95009837_95009854	0.0600958	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr2_+_66662690_66662711	0.0598782	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr6_+_126661253_126661356	0.059821	SOX3_SOX2	ENST00000368326.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368325.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368328.4|CENPW|ENSG00000203760.4|centromere protein W
hg19_v2_chr19_-_16582754_16582797	0.059713	SOX3_SOX2	ENST00000602151.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000597937.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000535753.2|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1
hg19_v2_chr9_-_6645628_6645659	0.0596606	SOX3_SOX2	ENST00000321612.6|GLDC|ENSG00000178445.8|glycine dehydrogenase (decarboxylating)
hg19_v2_chr9_-_115819039_115819082	0.0596455	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr16_-_29275800_29275939	0.0596178	SOX3_SOX2	ENST00000567984.1|RP11-426C22.6|ENSG00000260953.1|RP11-426C22.6
hg19_v2_chr19_+_20011731_20011743	0.0596025	SOX3_SOX2	ENST00000591366.1|ZNF93|ENSG00000184635.9|zinc finger protein 93
hg19_v2_chr4_+_146402997_146403023	0.0595996	SOX3_SOX2	ENST00000512019.1|SMAD1|ENSG00000170365.5|SMAD family member 1
hg19_v2_chr13_-_31039375_31039379	0.0595038	SOX3_SOX2	ENST00000399494.1|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr1_+_178482212_178482255	0.0594165	SOX3_SOX2	ENST00000319416.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000258298.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367643.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367642.3|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr6_+_46620676_46620696	0.0592617	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr4_-_100009856_100009902	0.0592035	SOX3_SOX2	ENST00000296412.8|ADH5|ENSG00000197894.6|alcohol dehydrogenase 5 (class III), chi polypeptide
hg19_v2_chr6_+_37787704_37787718	0.0591541	SOX3_SOX2	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr12_+_133657461_133657529	0.0590783	SOX3_SOX2	ENST00000412146.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000544426.1|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440984.2|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000319849.3|ZNF140|ENSG00000196387.5|zinc finger protein 140 	ENST00000440550.2|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr3_-_27763803_27763822	0.0590534	SOX3_SOX2	ENST00000449599.1|EOMES|ENSG00000163508.8|eomesodermin
hg19_v2_chr12_-_8815215_8815298	0.0587867	SOX3_SOX2	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr9_+_116343192_116343225	0.0586891	SOX3_SOX2	ENST00000471324.2|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr14_+_75746781_75746896	0.0585494	SOX3_SOX2	ENST00000555347.1|FOS|ENSG00000170345.5|FBJ murine osteosarcoma viral oncogene homolog
hg19_v2_chr1_+_202385953_202385994	0.0584259	SOX3_SOX2	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr18_-_24445729_24445782	0.058381	SOX3_SOX2	ENST00000383168.4|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr19_+_11708259_11708309	0.0583678	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr1_+_35734562_35734573	0.0583331	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr1_-_155880672_155880715	0.0579921	SOX3_SOX2	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr10_+_6244829_6244904	0.0578798	SOX3_SOX2	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr4_-_106629796_106629863	0.0578756	SOX3_SOX2	ENST00000416543.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000515819.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000420368.2|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000503746.1|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000340139.5|INTS12|ENSG00000138785.10|integrator complex subunit 12 	ENST00000433009.1|INTS12|ENSG00000138785.10|integrator complex subunit 12
hg19_v2_chr15_+_85923856_85923987	0.0578225	SOX3_SOX2	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr14_+_32546274_32546295	0.0577872	SOX3_SOX2	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr17_-_15469590_15469590	0.0576936	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr8_-_70745575_70745625	0.0575501	SOX3_SOX2	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr14_+_70078303_70078321	0.0575441	SOX3_SOX2	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr2_+_17721937_17721990	0.0575352	SOX3_SOX2	ENST00000451533.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr13_-_114843416_114843438	0.0574582	SOX3_SOX2	ENST00000389544.4|RASA3|ENSG00000185989.9|RAS p21 protein activator 3
hg19_v2_chr6_+_28109703_28109716	0.057456	SOX3_SOX2	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr9_+_2622085_2622174	0.0573968	SOX3_SOX2	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr10_+_70480963_70481010	0.0573645	SOX3_SOX2	ENST00000265872.6|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000535016.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000538031.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543719.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000539539.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000543225.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000536012.1|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1 	ENST00000494903.2|CCAR1|ENSG00000060339.9|cell division cycle and apoptosis regulator 1
hg19_v2_chr8_-_101965146_101965236	0.0573579	SOX3_SOX2	ENST00000395957.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000395948.2|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000457309.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr3_-_155011483_155011564	0.0571254	SOX3_SOX2	ENST00000489090.1|RP11-451G4.2|ENSG00000240045.1|RP11-451G4.2
hg19_v2_chr1_-_247267580_247267674	0.0570762	SOX3_SOX2	ENST00000366501.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000366500.1|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000476158.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000448299.2|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000358785.4|ZNF669|ENSG00000188295.10|zinc finger protein 669 	ENST00000343381.6|ZNF669|ENSG00000188295.10|zinc finger protein 669
hg19_v2_chr13_-_113242439_113242488	0.0569661	SOX3_SOX2	ENST00000375669.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3 	ENST00000261965.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3
hg19_v2_chr1_-_202897724_202897764	0.056869	SOX3_SOX2	ENST00000435533.3|KLHL12|ENSG00000117153.11|kelch-like family member 12 	ENST00000367258.1|KLHL12|ENSG00000117153.11|kelch-like family member 12
hg19_v2_chr7_+_117120017_117120087	0.0568304	SOX3_SOX2	ENST00000003084.6|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 	ENST00000454343.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr10_-_65028817_65028828	0.056667	SOX3_SOX2	ENST00000542921.1|JMJD1C|ENSG00000171988.13|jumonji domain containing 1C
hg19_v2_chr11_-_13461790_13461826	0.056643	SOX3_SOX2	ENST00000530907.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr4_-_15656923_15657035	0.0565629	SOX3_SOX2	ENST00000382358.4|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000412094.2|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5 	ENST00000341285.3|FBXL5|ENSG00000118564.10|F-box and leucine-rich repeat protein 5
hg19_v2_chr12_+_94071129_94071175	0.0565136	SOX3_SOX2	ENST00000552983.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000332896.3|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000552033.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000548483.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr2_+_25264933_25264999	0.0564869	SOX3_SOX2	ENST00000401432.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae) 	ENST00000403714.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae)
hg19_v2_chr12_-_46662772_46662835	0.056376	SOX3_SOX2	ENST00000549049.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000439706.1|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1 	ENST00000398637.5|SLC38A1|ENSG00000111371.11|solute carrier family 38, member 1
hg19_v2_chrX_+_12993202_12993239	0.0563216	SOX3_SOX2	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr11_+_1889880_1889903	0.0561999	SOX3_SOX2	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr1_-_63153944_63154110	0.056083	SOX3_SOX2	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr12_+_113344582_113344745	0.0560754	SOX3_SOX2	ENST00000202917.5|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000445409.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa 	ENST00000452357.2|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr2_-_27579623_27579648	0.0559572	SOX3_SOX2	ENST00000457748.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr6_-_133055815_133055834	0.0559406	SOX3_SOX2	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr7_-_148725733_148725759	0.055937	SOX3_SOX2	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr19_-_40919271_40919294	0.0558798	SOX3_SOX2	ENST00000291825.7|PRX|ENSG00000105227.10|periaxin 	ENST00000324001.7|PRX|ENSG00000105227.10|periaxin
hg19_v2_chr5_+_93954039_93954052	0.055755	SOX3_SOX2	ENST00000265140.5|ANKRD32|ENSG00000133302.8|ankyrin repeat domain 32
hg19_v2_chr10_+_127371798_127371862	0.0557124	SOX3_SOX2	ENST00000596068.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000607914.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000415305.2|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000449693.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3
hg19_v2_chr6_+_88054530_88054567	0.0556757	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr5_+_69321074_69321200	0.0556327	SOX3_SOX2	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr1_-_68698197_68698214	0.0555673	SOX3_SOX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr19_-_9695195_9695221	0.0555433	SOX3_SOX2	ENST00000320451.6|ZNF121|ENSG00000197961.7|zinc finger protein 121
hg19_v2_chr11_+_93861993_93862102	0.055478	SOX3_SOX2	ENST00000227638.3|PANX1|ENSG00000110218.4|pannexin 1 	ENST00000436171.2|PANX1|ENSG00000110218.4|pannexin 1
hg19_v2_chr17_+_33914460_33914536	0.0554161	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr2_-_228497888_228498036	0.0553683	SOX3_SOX2	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr2_+_65283506_65283527	0.0553191	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr18_+_9885961_9885992	0.0552621	SOX3_SOX2	ENST00000306084.6|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chrX_-_134049262_134049297	0.0552558	SOX3_SOX2	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr20_-_49547910_49547988	0.0552126	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr6_+_43265992_43266003	0.05503	SOX3_SOX2	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr2_+_183580954_183581049	0.0549696	SOX3_SOX2	ENST00000264065.7|DNAJC10|ENSG00000077232.12|DnaJ (Hsp40) homolog, subfamily C, member 10
hg19_v2_chr17_+_7621045_7621079	0.0548178	SOX3_SOX2	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr11_+_35198118_35198209	0.0547282	SOX3_SOX2	ENST00000525211.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000526000.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000279452.6|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group) 	ENST00000527889.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr1_-_156722015_156722034	0.0546934	SOX3_SOX2	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr17_+_54230819_54230871	0.0544875	SOX3_SOX2	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr6_+_32811861_32811872	0.0544141	SOX3_SOX2	ENST00000453426.1|TAPSAR1|ENSG00000204261.4|TAP1 and PSMB8 antisense RNA 1
hg19_v2_chr4_+_118955500_118955612	0.0543701	SOX3_SOX2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr6_+_42531798_42531810	0.0543089	SOX3_SOX2	ENST00000372903.2|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372899.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2 	ENST00000372901.1|UBR2|ENSG00000024048.6|ubiquitin protein ligase E3 component n-recognin 2
hg19_v2_chr9_+_103189458_103189504	0.0541409	SOX3_SOX2	ENST00000398977.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr16_-_15736881_15736928	0.0540115	SOX3_SOX2	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr8_+_67624653_67624752	0.0539652	SOX3_SOX2	ENST00000521198.2|SGK3|ENSG00000104205.8|serum/glucocorticoid regulated kinase family, member 3
hg19_v2_chr12_-_10588539_10588600	0.0539307	SOX3_SOX2	ENST00000381902.2|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000381901.1|KLRC2|ENSG00000205809.5|killer cell lectin-like receptor subfamily C, member 2 	ENST00000539033.1|NKG2-E|ENSG00000255641.1|Uncharacterized protein
hg19_v2_chr8_-_82644562_82644654	0.0538973	SOX3_SOX2	ENST00000520604.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000521742.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000520635.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1
hg19_v2_chr8_+_67104323_67104350	0.0538381	SOX3_SOX2	ENST00000518412.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000518035.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967 	ENST00000517725.1|LINC00967|ENSG00000253138.1|long intergenic non-protein coding RNA 967
hg19_v2_chr22_+_30792980_30793047	0.053768	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr3_-_116163830_116163855	0.0537554	SOX3_SOX2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr2_+_89901292_89901292	0.0536846	SOX3_SOX2	ENST00000448155.2|IGKV1D-39|ENSG00000251546.1|immunoglobulin kappa variable 1D-39
hg19_v2_chr2_+_160568978_160569064	0.053643	SOX3_SOX2	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chr1_-_89357179_89357301	0.0536391	SOX3_SOX2	ENST00000448623.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000418217.1|GTF2B|ENSG00000137947.7|general transcription factor IIB 	ENST00000370500.5|GTF2B|ENSG00000137947.7|general transcription factor IIB
hg19_v2_chr18_-_73967160_73967169	0.0534315	SOX3_SOX2	ENST00000579714.1|RP11-94B19.7|ENSG00000265717.1|RP11-94B19.7
hg19_v2_chr5_+_98104978_98105010	0.0533954	SOX3_SOX2	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr13_-_39612176_39612258	0.0532864	SOX3_SOX2	ENST00000352251.3|PROSER1|ENSG00000120685.15|proline and serine rich 1 	ENST00000350125.3|PROSER1|ENSG00000120685.15|proline and serine rich 1
hg19_v2_chr7_+_150690857_150690892	0.0532683	SOX3_SOX2	ENST00000484524.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell) 	ENST00000467517.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr19_+_57019212_57019250	0.0532405	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr5_+_125758813_125758845	0.0531535	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr1_-_53019059_53019176	0.0531389	SOX3_SOX2	ENST00000484723.2|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000524582.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr5_+_76011868_76012005	0.0531387	SOX3_SOX2	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr2_+_33172012_33172039	0.0530222	SOX3_SOX2	ENST00000404816.2|LTBP1|ENSG00000049323.11|latent transforming growth factor beta binding protein 1
hg19_v2_chr11_+_34654011_34654118	0.052897	SOX3_SOX2	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr17_-_56605341_56605363	0.0528447	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr14_+_91591873_91591888	0.0528439	SOX3_SOX2	ENST00000521064.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr3_-_52719888_52719908	0.0526854	SOX3_SOX2	ENST00000458294.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr5_+_102455968_102456013	0.052683	SOX3_SOX2	ENST00000358359.3|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr5_+_148960931_148961073	0.0526141	SOX3_SOX2	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr14_-_23446021_23446070	0.0525837	SOX3_SOX2	ENST00000553592.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr1_+_144339738_144339738	0.0525169	SOX3_SOX2	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr1_+_26437631_26437665	0.0524382	SOX3_SOX2	ENST00000444713.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr5_-_130868688_130868736	0.0524164	SOX3_SOX2	ENST00000504575.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000513227.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6
hg19_v2_chr16_+_14396121_14396145	0.0523453	SOX3_SOX2	ENST00000570945.1|RP11-65J21.3|ENSG00000262454.1|RP11-65J21.3
hg19_v2_chr5_+_147774275_147774340	0.0523427	SOX3_SOX2	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr18_+_3449821_3450034	0.0522636	SOX3_SOX2	ENST00000407501.2|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000405385.3|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000546979.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr22_+_21128167_21128167	0.0522562	SOX3_SOX2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chr1_-_173176452_173176477	0.0521018	SOX3_SOX2	ENST00000281834.3|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr17_+_77030267_77030391	0.0518897	SOX3_SOX2	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr2_+_17997763_17997763	0.0518423	SOX3_SOX2	ENST00000281047.3|MSGN1|ENSG00000151379.3|mesogenin 1
hg19_v2_chr9_+_112810878_112810985	0.0518278	SOX3_SOX2	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr4_+_48485341_48485394	0.0517679	SOX3_SOX2	ENST00000273861.4|SLC10A4|ENSG00000145248.6|solute carrier family 10, member 4
hg19_v2_chr10_+_47894572_47894572	0.0517654	SOX3_SOX2	ENST00000355876.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr2_-_178128199_178128245	0.0517633	SOX3_SOX2	ENST00000449627.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr11_-_71752838_71752915	0.0517093	SOX3_SOX2	ENST00000537930.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr8_+_23104130_23104184	0.0516735	SOX3_SOX2	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr12_-_104531785_104531812	0.0516296	SOX3_SOX2	ENST00000551727.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr20_+_36149602_36149665	0.0515316	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr16_-_18887627_18887627	0.0514344	SOX3_SOX2	ENST00000563235.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr14_+_35761580_35761679	0.0514118	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr1_+_152178320_152178334	0.051407	SOX3_SOX2	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr12_-_6716534_6716557	0.0513982	SOX3_SOX2	ENST00000544484.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000309577.6|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000357008.2|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr11_-_47574664_47574669	0.0513345	SOX3_SOX2	ENST00000310513.5|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1 	ENST00000531165.1|CELF1|ENSG00000149187.13|CUGBP, Elav-like family member 1
hg19_v2_chr20_-_43977055_43977073	0.0511167	SOX3_SOX2	ENST00000372733.3|SDC4|ENSG00000124145.5|syndecan 4 	ENST00000537976.1|SDC4|ENSG00000124145.5|syndecan 4
hg19_v2_chr1_+_215256467_215256622	0.0510706	SOX3_SOX2	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr15_+_50474385_50474404	0.051034	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr7_+_30960915_30961105	0.050928	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr5_+_34656331_34656351	0.0508927	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr2_-_238499131_238499206	0.0508873	SOX3_SOX2	ENST00000538644.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr17_-_79520135_79520166	0.0508817	SOX3_SOX2	ENST00000541246.1|C17orf70|ENSG00000185504.12|chromosome 17 open reading frame 70 	ENST00000544302.1|C17orf70|ENSG00000185504.12|chromosome 17 open reading frame 70
hg19_v2_chr8_+_98656336_98656535	0.0508174	SOX3_SOX2	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr13_-_74708372_74708409	0.0507208	SOX3_SOX2	ENST00000377666.4|KLF12|ENSG00000118922.12|Kruppel-like factor 12
hg19_v2_chr1_+_169079823_169079836	0.050662	SOX3_SOX2	ENST00000367813.3|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr12_-_56120838_56120848	0.0506434	SOX3_SOX2	ENST00000548160.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr1_+_201708992_201709011	0.0505121	SOX3_SOX2	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr21_-_34144157_34144175	0.0505059	SOX3_SOX2	ENST00000331923.4|PAXBP1|ENSG00000159086.10|PAX3 and PAX7 binding protein 1
hg19_v2_chr3_+_100211412_100211504	0.0504323	SOX3_SOX2	ENST00000323523.4|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000403410.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A 	ENST00000449609.1|TMEM45A|ENSG00000181458.6|transmembrane protein 45A
hg19_v2_chr11_+_61016805_61016805	0.0502843	SOX3_SOX2	ENST00000541528.1|PGA5|ENSG00000256713.3|pepsinogen 5, group I (pepsinogen A)
hg19_v2_chr17_+_65373531_65373577	0.0502614	SOX3_SOX2	ENST00000580974.1|PITPNC1|ENSG00000154217.10|phosphatidylinositol transfer protein, cytoplasmic 1
hg19_v2_chr12_+_109577202_109577289	0.0502568	SOX3_SOX2	ENST00000377848.3|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta 	ENST00000377854.5|ACACB|ENSG00000076555.11|acetyl-CoA carboxylase beta
hg19_v2_chr4_-_140216948_140216999	0.050141	SOX3_SOX2	ENST00000265500.4|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr5_+_67588391_67588411	0.0501347	SOX3_SOX2	ENST00000523872.1|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr2_-_232328867_232328921	0.0501253	SOX3_SOX2	ENST00000453992.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000417652.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000454824.1|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr1_-_204463829_204463857	0.0501153	SOX3_SOX2	ENST00000429009.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta 	ENST00000415899.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr4_-_25865159_25865382	0.0499804	SOX3_SOX2	ENST00000502949.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000264868.5|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000513691.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans) 	ENST00000514872.1|SEL1L3|ENSG00000091490.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
hg19_v2_chr1_+_87797351_87797441	0.0499712	SOX3_SOX2	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr2_+_208576259_208576278	0.0499149	SOX3_SOX2	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chrX_-_73512411_73512444	0.0497751	SOX3_SOX2	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr1_-_224033596_224033697	0.0497557	SOX3_SOX2	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr2_-_201828356_201828412	0.0497519	SOX3_SOX2	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr11_-_130184555_130184581	0.0496914	SOX3_SOX2	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr4_-_187647773_187647876	0.0496004	SOX3_SOX2	ENST00000509647.1|FAT1|ENSG00000083857.9|FAT atypical cadherin 1
hg19_v2_chr10_-_123734683_123734738	0.0495503	SOX3_SOX2	ENST00000369017.5|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae) 	ENST00000369023.3|NSMCE4A|ENSG00000107672.10|non-SMC element 4 homolog A (S. cerevisiae)
hg19_v2_chr15_-_72521017_72521045	0.0495338	SOX3_SOX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr7_-_78400364_78400403	0.0494925	SOX3_SOX2	ENST00000535697.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr4_+_41614909_41614926	0.0493767	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr11_+_34643600_34643750	0.0493228	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr1_-_23670813_23670816	0.0492601	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr2_-_208489275_208489346	0.0492434	SOX3_SOX2	ENST00000272839.3|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000426075.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chrX_+_70443050_70443061	0.0491772	SOX3_SOX2	ENST00000361726.6|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr1_-_75198940_75199092	0.0491385	SOX3_SOX2	ENST00000417775.1|CRYZ|ENSG00000116791.9|crystallin, zeta (quinone reductase)
hg19_v2_chr2_-_39348137_39348212	0.049122	SOX3_SOX2	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr5_-_131347583_131347870	0.0490378	SOX3_SOX2	ENST00000379255.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000430403.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000544770.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379246.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000414078.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000441995.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chr13_+_28194873_28194954	0.048805	SOX3_SOX2	ENST00000302979.3|POLR1D|ENSG00000186184.11|polymerase (RNA) I polypeptide D, 16kDa
hg19_v2_chr5_-_111092930_111092955	0.0487754	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr2_+_27070964_27071027	0.0487257	SOX3_SOX2	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr12_-_96793844_96793855	0.0487246	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr6_-_41254403_41254457	0.0487131	SOX3_SOX2	ENST00000589614.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000334475.6|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000591620.1|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1 	ENST00000244709.4|TREM1|ENSG00000124731.8|triggering receptor expressed on myeloid cells 1
hg19_v2_chr2_+_203241531_203241659	0.0487015	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr2_-_182545603_182545603	0.048681	SOX3_SOX2	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr13_+_76334567_76334582	0.048652	SOX3_SOX2	ENST00000321797.8|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr1_-_161015752_161015778	0.0484991	SOX3_SOX2	ENST00000435396.1|USF1|ENSG00000158773.10|upstream transcription factor 1 	ENST00000368021.3|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr3_+_141106643_141106681	0.0483896	SOX3_SOX2	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr7_-_44229022_44229055	0.0483828	SOX3_SOX2	ENST00000403799.3|GCK|ENSG00000106633.11|glucokinase (hexokinase 4)
hg19_v2_chr12_-_76953284_76953341	0.0482593	SOX3_SOX2	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr7_+_20370746_20370778	0.0481409	SOX3_SOX2	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr14_+_50234827_50234886	0.0480951	SOX3_SOX2	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr11_-_117103208_117103288	0.0480224	SOX3_SOX2	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr12_-_12674032_12674059	0.0479989	SOX3_SOX2	ENST00000298573.4|DUSP16|ENSG00000111266.4|dual specificity phosphatase 16
hg19_v2_chr14_-_23446003_23446019	0.0479536	SOX3_SOX2	ENST00000553911.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr20_-_45985414_45985462	0.0479453	SOX3_SOX2	ENST00000461685.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000372023.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000540497.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000435836.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000471951.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000352431.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000396281.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000355972.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000360911.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr11_-_105892937_105893130	0.0479418	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr8_-_38325219_38325418	0.0477709	SOX3_SOX2	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr6_+_87865262_87865339	0.0476547	SOX3_SOX2	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr10_+_22610124_22610188	0.0476244	SOX3_SOX2	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr1_-_23670752_23670803	0.0476169	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr1_+_223566715_223566791	0.0475103	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr10_-_14614122_14614188	0.0475079	SOX3_SOX2	ENST00000378465.3|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000452706.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B 	ENST00000378458.2|FAM107B|ENSG00000065809.9|family with sequence similarity 107, member B
hg19_v2_chr20_-_5591626_5591677	0.0474755	SOX3_SOX2	ENST00000379019.4|GPCPD1|ENSG00000125772.8|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
hg19_v2_chr3_+_29323043_29323132	0.0473838	SOX3_SOX2	ENST00000452462.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3 	ENST00000456853.1|RBMS3|ENSG00000144642.16|RNA binding motif, single stranded interacting protein 3
hg19_v2_chr12_-_6716569_6716642	0.0473577	SOX3_SOX2	ENST00000544040.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4 	ENST00000545942.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr12_+_133613878_133613924	0.0473412	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr1_-_243417762_243417788	0.0473303	SOX3_SOX2	ENST00000522191.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr15_-_35047166_35047204	0.0472702	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr20_+_39657454_39657470	0.0470838	SOX3_SOX2	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chr1_+_54411715_54411760	0.0470639	SOX3_SOX2	ENST00000371370.3|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42 	ENST00000371368.1|LRRC42|ENSG00000116212.10|leucine rich repeat containing 42
hg19_v2_chr2_+_111880242_111880289	0.0470564	SOX3_SOX2	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr6_-_127664475_127664543	0.0470304	SOX3_SOX2	ENST00000474289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000534442.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000368289.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000525745.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000430841.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr1_+_97187318_97187380	0.0470298	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr18_+_32402321_32402331	0.0468994	SOX3_SOX2	ENST00000587723.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr3_-_45267760_45267826	0.0468091	SOX3_SOX2	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr2_-_18770812_18770839	0.0467941	SOX3_SOX2	ENST00000359846.2|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000532967.1|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000444297.2|NT5C1B-RDH14|ENSG00000250741.2|NT5C1B-RDH14 readthrough 	ENST00000304081.4|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB 	ENST00000600945.1|NT5C1B|ENSG00000185013.12|5'-nucleotidase, cytosolic IB
hg19_v2_chr11_-_67141090_67141208	0.0466928	SOX3_SOX2	ENST00000312438.7|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr7_-_111846435_111846471	0.0466729	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr4_-_69111401_69111438	0.0466597	SOX3_SOX2	ENST00000332644.5|TMPRSS11B|ENSG00000185873.7|transmembrane protease, serine 11B
hg19_v2_chr1_-_212004090_212004168	0.0465499	SOX3_SOX2	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr12_-_106641728_106641805	0.0464698	SOX3_SOX2	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr6_+_150070831_150070856	0.0464511	SOX3_SOX2	ENST00000367380.5|PCMT1|ENSG00000120265.12|protein-L-isoaspartate (D-aspartate) O-methyltransferase
hg19_v2_chr4_+_144257915_144258009	0.0463349	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr4_+_69917078_69917101	0.0463285	SOX3_SOX2	ENST00000502942.1|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr2_-_86564740_86564756	0.0462963	SOX3_SOX2	ENST00000540790.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000428491.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr8_+_124864227_124864227	0.046271	SOX3_SOX2	ENST00000522917.1|FER1L6|ENSG00000214814.2|fer-1-like 6 (C. elegans)
hg19_v2_chr2_-_3521518_3521518	0.045774	SOX3_SOX2	ENST00000382093.5|ADI1|ENSG00000182551.9|acireductone dioxygenase 1
hg19_v2_chr1_+_16085263_16085314	0.0457338	SOX3_SOX2	ENST00000483633.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000502739.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000431771.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr19_-_39826639_39826825	0.0457185	SOX3_SOX2	ENST00000602185.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000598034.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000601387.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000595636.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000253054.8|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000594700.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma 	ENST00000597595.1|GMFG|ENSG00000130755.8|glia maturation factor, gamma
hg19_v2_chr14_-_61124977_61125037	0.0456595	SOX3_SOX2	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr15_-_74421477_74421619	0.0456567	SOX3_SOX2	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr5_+_36606992_36607061	0.0456341	SOX3_SOX2	ENST00000505202.1|SLC1A3|ENSG00000079215.9|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v2_chr5_+_129083772_129083814	0.0456135	SOX3_SOX2	ENST00000564719.1|KIAA1024L|ENSG00000186367.5|KIAA1024-like
hg19_v2_chr6_+_135502501_135502652	0.0455451	SOX3_SOX2	ENST00000527615.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000420123.2|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000525369.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000528774.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534121.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000534044.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog 	ENST00000533624.1|MYB|ENSG00000118513.14|v-myb avian myeloblastosis viral oncogene homolog
hg19_v2_chr4_+_26165074_26165110	0.0455407	SOX3_SOX2	ENST00000512351.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr7_-_105029812_105029860	0.0453587	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr1_-_85930246_85930289	0.045355	SOX3_SOX2	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr6_+_149068464_149068559	0.0453339	SOX3_SOX2	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chr3_+_20081515_20081570	0.0452189	SOX3_SOX2	ENST00000263754.4|KAT2B|ENSG00000114166.7|K(lysine) acetyltransferase 2B
hg19_v2_chr6_-_105850937_105850983	0.0451261	SOX3_SOX2	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr9_-_36401155_36401219	0.0451222	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr3_-_47823298_47823423	0.0451154	SOX3_SOX2	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr1_+_32930647_32930684	0.04486	SOX3_SOX2	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr1_-_161015663_161015694	0.0448429	SOX3_SOX2	ENST00000534633.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr19_+_51815102_51815102	0.0448317	SOX3_SOX2	ENST00000270642.8|IGLON5|ENSG00000142549.9|IgLON family member 5
hg19_v2_chr18_-_61311485_61311532	0.0447112	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chrX_+_71401526_71401549	0.0447007	SOX3_SOX2	ENST00000218432.5|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000423432.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000373669.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr5_+_102595119_102595142	0.0446788	SOX3_SOX2	ENST00000510890.1|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr7_-_29186008_29186172	0.0446737	SOX3_SOX2	ENST00000396276.3|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000265394.5|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr3_+_37440653_37440653	0.0446733	SOX3_SOX2	ENST00000328376.5|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35 	ENST00000452017.2|C3orf35|ENSG00000198590.7|chromosome 3 open reading frame 35
hg19_v2_chr6_+_56911336_56911347	0.0446212	SOX3_SOX2	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr4_+_24797085_24797180	0.0446109	SOX3_SOX2	ENST00000382120.3|SOD3|ENSG00000109610.5|superoxide dismutase 3, extracellular
hg19_v2_chr16_+_2880296_2880310	0.0444826	SOX3_SOX2	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr2_-_153573887_153573930	0.0443728	SOX3_SOX2	ENST00000493468.2|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 	ENST00000545856.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr19_-_9811347_9811452	0.0442735	SOX3_SOX2	ENST00000585964.1|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000457674.2|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000590544.1|ZNF812|ENSG00000224689.3|zinc finger protein 812
hg19_v2_chr12_+_49761224_49761259	0.0442556	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr19_-_6502304_6502328	0.0442545	SOX3_SOX2	ENST00000540257.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594276.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594075.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000600216.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000596926.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa
hg19_v2_chr1_-_78149041_78149142	0.044194	SOX3_SOX2	ENST00000414381.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000370798.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr18_+_3451584_3451606	0.0441895	SOX3_SOX2	ENST00000551541.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr8_-_27469383_27469483	0.0441893	SOX3_SOX2	ENST00000519742.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr2_-_238499303_238499331	0.0441735	SOX3_SOX2	ENST00000409576.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr15_-_73075964_73075980	0.0441626	SOX3_SOX2	ENST00000563907.1|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr11_-_46142505_46142565	0.0441557	SOX3_SOX2	ENST00000524497.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000418153.2|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr22_-_32022280_32022297	0.0439956	SOX3_SOX2	ENST00000442379.1|PISD|ENSG00000241878.5|phosphatidylserine decarboxylase
hg19_v2_chr6_-_28304152_28304282	0.0439903	SOX3_SOX2	ENST00000435857.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr3_-_182698381_182698431	0.0439154	SOX3_SOX2	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr7_+_138145145_138145209	0.0438824	SOX3_SOX2	ENST00000415680.2|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr17_+_9728828_9728868	0.0437963	SOX3_SOX2	ENST00000262441.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr7_-_30066233_30066332	0.043759	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr7_-_130353553_130353598	0.0435949	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr13_+_51483814_51483935	0.0435738	SOX3_SOX2	ENST00000336617.3|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B 	ENST00000422660.1|RNASEH2B|ENSG00000136104.14|ribonuclease H2, subunit B
hg19_v2_chr19_+_58790314_58790358	0.0435178	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr1_-_156722195_156722246	0.0433588	SOX3_SOX2	ENST00000368206.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr16_+_21623958_21624021	0.043303	SOX3_SOX2	ENST00000568826.1|METTL9|ENSG00000197006.9|methyltransferase like 9
hg19_v2_chr4_-_113558079_113558145	0.0432927	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr2_+_66662510_66662532	0.0431434	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr17_+_33914276_33914386	0.043083	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr12_-_95611149_95611249	0.0429586	SOX3_SOX2	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr13_-_33760216_33760234	0.0427266	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr6_-_146057144_146057164	0.0427202	SOX3_SOX2	ENST00000367519.3|EPM2A|ENSG00000112425.9|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)
hg19_v2_chr12_-_118498958_118499021	0.042702	SOX3_SOX2	ENST00000315436.3|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr2_-_208489707_208490022	0.0427	SOX3_SOX2	ENST00000448007.2|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000432416.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A 	ENST00000411432.1|METTL21A|ENSG00000144401.10|methyltransferase like 21A
hg19_v2_chrX_+_135579670_135579715	0.0424951	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr5_+_102455853_102455961	0.0424853	SOX3_SOX2	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr20_+_3869423_3869486	0.0424403	SOX3_SOX2	ENST00000497424.1|PANK2|ENSG00000125779.17|pantothenate kinase 2
hg19_v2_chr20_+_23331373_23331480	0.0423968	SOX3_SOX2	ENST00000254998.2|NXT1|ENSG00000132661.3|NTF2-like export factor 1
hg19_v2_chr19_-_55660561_55660722	0.0423891	SOX3_SOX2	ENST00000587758.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000356783.5|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000291901.8|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588426.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588147.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000536926.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588981.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow)
hg19_v2_chr19_+_34663551_34663564	0.0423871	SOX3_SOX2	ENST00000586157.1|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr1_-_17445930_17445954	0.0422809	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr6_-_160210715_160210781	0.042256	SOX3_SOX2	ENST00000392168.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000321394.7|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr2_+_201676908_201677120	0.0421976	SOX3_SOX2	ENST00000409226.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000452790.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr19_+_21203426_21203475	0.0421571	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chr5_-_124080203_124080258	0.042126	SOX3_SOX2	ENST00000504926.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr7_-_30009542_30009562	0.0420881	SOX3_SOX2	ENST00000438497.1|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr18_+_56532053_56532095	0.0419841	SOX3_SOX2	ENST00000592452.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr22_-_22090043_22090058	0.0418839	SOX3_SOX2	ENST00000403503.1|YPEL1|ENSG00000100027.10|yippee-like 1 (Drosophila)
hg19_v2_chr3_+_15643476_15643557	0.0418641	SOX3_SOX2	ENST00000436193.1|BTD|ENSG00000169814.8|biotinidase 	ENST00000383778.4|BTD|ENSG00000169814.8|biotinidase
hg19_v2_chr14_+_74815116_74815202	0.0418163	SOX3_SOX2	ENST00000256362.4|VRTN|ENSG00000133980.4|vertebrae development associated
hg19_v2_chr10_+_72164135_72164135	0.0417933	SOX3_SOX2	ENST00000373218.4|EIF4EBP2|ENSG00000148730.6|eukaryotic translation initiation factor 4E binding protein 2
hg19_v2_chr15_-_65360450_65360574	0.041774	SOX3_SOX2	ENST00000220062.4|RASL12|ENSG00000103710.6|RAS-like, family 12
hg19_v2_chr3_-_160283348_160283376	0.0416878	SOX3_SOX2	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr4_-_99578789_99578843	0.0416629	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr8_+_126442563_126442624	0.0416347	SOX3_SOX2	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr11_-_108422926_108422937	0.0414759	SOX3_SOX2	ENST00000428840.1|EXPH5|ENSG00000110723.7|exophilin 5 	ENST00000526312.1|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr19_-_20150252_20150298	0.0414283	SOX3_SOX2	ENST00000595736.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000593468.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000596019.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr5_-_111091948_111091994	0.0414281	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr10_+_97803151_97803348	0.0413982	SOX3_SOX2	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr2_-_198299726_198299815	0.0413961	SOX3_SOX2	ENST00000409915.4|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000487698.1|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000414963.2|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa 	ENST00000335508.6|SF3B1|ENSG00000115524.11|splicing factor 3b, subunit 1, 155kDa
hg19_v2_chr1_+_79115503_79115530	0.0413629	SOX3_SOX2	ENST00000370747.4|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000438486.1|IFI44|ENSG00000137965.6|interferon-induced protein 44 	ENST00000545124.1|IFI44|ENSG00000137965.6|interferon-induced protein 44
hg19_v2_chr4_+_57276661_57276682	0.0411573	SOX3_SOX2	ENST00000598320.1|AC068620.1|ENSG00000268171.1|Uncharacterized protein
hg19_v2_chr7_-_84122033_84122049	0.0410948	SOX3_SOX2	ENST00000424555.1|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr4_-_53522703_53522757	0.040991	SOX3_SOX2	ENST00000508499.1|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr1_+_16085244_16085255	0.0409457	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr5_+_137688285_137688429	0.0408918	SOX3_SOX2	ENST00000314358.5|KDM3B|ENSG00000120733.9|lysine (K)-specific demethylase 3B
hg19_v2_chr7_-_105319536_105319611	0.040866	SOX3_SOX2	ENST00000477775.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr3_-_15540055_15540120	0.0408013	SOX3_SOX2	ENST00000605797.1|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 	ENST00000435459.2|COLQ|ENSG00000206561.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
hg19_v2_chr1_+_10459111_10459175	0.0407987	SOX3_SOX2	ENST00000541529.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000270776.8|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000483936.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase 	ENST00000538557.1|PGD|ENSG00000142657.16|phosphogluconate dehydrogenase
hg19_v2_chr18_-_13726510_13726662	0.0407823	SOX3_SOX2	ENST00000322247.3|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000592976.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000402563.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A 	ENST00000591269.1|FAM210A|ENSG00000177150.8|family with sequence similarity 210, member A
hg19_v2_chr7_-_140178775_140178866	0.0406928	SOX3_SOX2	ENST00000474576.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000473444.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1 	ENST00000471104.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr8_+_95653427_95653460	0.040619	SOX3_SOX2	ENST00000454170.2|ESRP1|ENSG00000104413.11|epithelial splicing regulatory protein 1
hg19_v2_chr8_-_9009079_9009092	0.0404986	SOX3_SOX2	ENST00000519699.1|PPP1R3B|ENSG00000173281.4|protein phosphatase 1, regulatory subunit 3B
hg19_v2_chr17_-_76719638_76719657	0.0404918	SOX3_SOX2	ENST00000587308.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr1_-_11751529_11751536	0.0403706	SOX3_SOX2	ENST00000376672.1|MAD2L2|ENSG00000116670.10|MAD2 mitotic arrest deficient-like 2 (yeast)
hg19_v2_chr8_-_123793048_123793069	0.0403426	SOX3_SOX2	ENST00000607710.1|RP11-44N11.2|ENSG00000272384.1|RP11-44N11.2
hg19_v2_chr12_+_93963590_93963628	0.040294	SOX3_SOX2	ENST00000340600.2|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr2_-_61765732_61765761	0.0402533	SOX3_SOX2	ENST00000443240.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000436018.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr15_+_80987617_80987720	0.040236	SOX3_SOX2	ENST00000258884.4|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C 	ENST00000558464.1|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C
hg19_v2_chr17_+_38171614_38171635	0.0401046	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr17_+_33914424_33914455	0.040078	SOX3_SOX2	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr11_-_46142615_46142729	0.0398077	SOX3_SOX2	ENST00000529734.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000323180.6|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr2_+_69240415_69240438	0.0397665	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr10_+_114709999_114710031	0.0397601	SOX3_SOX2	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr3_+_9958758_9958848	0.0397259	SOX3_SOX2	ENST00000383812.4|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000438091.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000295981.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000436503.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000403601.3|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000416074.2|IL17RC|ENSG00000163702.14|interleukin 17 receptor C 	ENST00000455057.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C
hg19_v2_chr17_+_75447326_75447457	0.0395699	SOX3_SOX2	ENST00000591088.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chrX_+_21958814_21958864	0.0395552	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr2_+_30455016_30455055	0.0394724	SOX3_SOX2	ENST00000401506.1|LBH|ENSG00000213626.7|limb bud and heart development 	ENST00000407930.2|LBH|ENSG00000213626.7|limb bud and heart development
hg19_v2_chr17_+_34842512_34842572	0.0394408	SOX3_SOX2	ENST00000588253.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000592616.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000590858.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3 	ENST00000588357.1|ZNHIT3|ENSG00000108278.7|zinc finger, HIT-type containing 3
hg19_v2_chr5_-_146833485_146833522	0.0394045	SOX3_SOX2	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr12_+_93772402_93772430	0.0393924	SOX3_SOX2	ENST00000546925.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr9_+_112852477_112852514	0.039316	SOX3_SOX2	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr3_-_112360116_112360153	0.039221	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr2_-_200323414_200323468	0.0391543	SOX3_SOX2	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr19_-_58400148_58400364	0.0391469	SOX3_SOX2	ENST00000595048.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000600634.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000595295.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000596604.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597342.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597807.1|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr5_-_83680192_83680209	0.0391321	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chrX_+_102469997_102470094	0.0390488	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr2_-_99347528_99347603	0.0389283	SOX3_SOX2	ENST00000393487.1|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr7_+_129015484_129015519	0.0388825	SOX3_SOX2	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr21_-_27107881_27107984	0.038849	SOX3_SOX2	ENST00000400090.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400087.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 	ENST00000400093.3|ATP5J|ENSG00000154723.8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
hg19_v2_chr2_+_131513864_131513922	0.0388449	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr15_-_59500973_59500990	0.0387521	SOX3_SOX2	ENST00000560749.1|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr3_-_58563094_58563126	0.0386856	SOX3_SOX2	ENST00000464064.1|FAM107A|ENSG00000168309.12|family with sequence similarity 107, member A
hg19_v2_chr1_+_42928945_42929025	0.0385264	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr8_+_133787586_133787673	0.0385263	SOX3_SOX2	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr15_-_59225758_59225837	0.0383826	SOX3_SOX2	ENST00000558486.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000560682.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000249736.7|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000559880.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator 	ENST00000536328.1|SLTM|ENSG00000137776.12|SAFB-like, transcription modulator
hg19_v2_chr3_-_149688502_149688526	0.0383572	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr9_+_103235365_103235419	0.0380644	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr11_-_130184470_130184533	0.0379651	SOX3_SOX2	ENST00000357899.4|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44 	ENST00000397753.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr14_-_35182994_35183034	0.0378318	SOX3_SOX2	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr17_-_44270133_44270207	0.0377603	SOX3_SOX2	ENST00000262419.6|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1 	ENST00000393476.3|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr12_-_18243075_18243091	0.0376198	SOX3_SOX2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr20_+_62716348_62716369	0.0376197	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chr15_-_70994612_70994652	0.0376147	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr7_+_29234028_29234043	0.0376028	SOX3_SOX2	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr6_-_28303901_28303975	0.0375516	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr5_+_121647764_121647876	0.0375192	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr12_-_15942503_15942514	0.0374045	SOX3_SOX2	ENST00000281172.5|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr2_+_70121075_70121102	0.0373898	SOX3_SOX2	ENST00000409116.1|SNRNP27|ENSG00000124380.6|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
hg19_v2_chr1_-_235292250_235292261	0.0373491	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr16_+_69984810_69984889	0.037345	SOX3_SOX2	ENST00000393701.2|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A 	ENST00000568461.1|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A
hg19_v2_chr20_-_35492048_35492118	0.0373257	SOX3_SOX2	ENST00000237536.4|SOGA1|ENSG00000149639.10|suppressor of glucose, autophagy associated 1
hg19_v2_chr6_-_75915757_75915775	0.037306	SOX3_SOX2	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr4_+_95972822_95972844	0.0372582	SOX3_SOX2	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chrX_+_84499038_84499078	0.0372284	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr11_+_111807863_111807937	0.0372033	SOX3_SOX2	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr2_-_188430478_188430496	0.0371845	SOX3_SOX2	ENST00000421427.1|TFPI|ENSG00000003436.10|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
hg19_v2_chr4_-_175443484_175443650	0.0371771	SOX3_SOX2	ENST00000514584.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000542498.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000296521.7|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000422112.2|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD) 	ENST00000504433.1|HPGD|ENSG00000164120.9|hydroxyprostaglandin dehydrogenase 15-(NAD)
hg19_v2_chr20_-_56285595_56285656	0.0371057	SOX3_SOX2	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr12_+_31477250_31477250	0.0370978	SOX3_SOX2	ENST00000313737.4|AC024940.1|ENSG00000177340.4|AC024940.1
hg19_v2_chr14_+_21566980_21567097	0.0370264	SOX3_SOX2	ENST00000418511.2|TMEM253|ENSG00000232070.4|transmembrane protein 253 	ENST00000554329.2|TMEM253|ENSG00000232070.4|transmembrane protein 253
hg19_v2_chrX_-_24690771_24690794	0.0370211	SOX3_SOX2	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr20_+_21283941_21284007	0.0369302	SOX3_SOX2	ENST00000377191.3|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2 	ENST00000430571.2|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr20_-_45985464_45985567	0.0368626	SOX3_SOX2	ENST00000458360.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000262975.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr15_+_72766651_72766680	0.0368615	SOX3_SOX2	ENST00000379887.4|ARIH1|ENSG00000166233.8|ariadne RBR E3 ubiquitin protein ligase 1
hg19_v2_chr8_-_42396185_42396197	0.0368458	SOX3_SOX2	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr6_-_112115074_112115094	0.0368034	SOX3_SOX2	ENST00000368667.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chr4_-_164534657_164534701	0.0367627	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr1_+_204494618_204494676	0.0367552	SOX3_SOX2	ENST00000367180.1|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse) 	ENST00000391947.2|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse)
hg19_v2_chr8_-_8751068_8751158	0.0366215	SOX3_SOX2	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr17_+_31254892_31254955	0.0366176	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr3_+_57094469_57094469	0.036488	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chrX_+_135229600_135229624	0.0364796	SOX3_SOX2	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr10_-_104953009_104953061	0.0364087	SOX3_SOX2	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr2_-_230787879_230787955	0.0363954	SOX3_SOX2	ENST00000435716.1|TRIP12|ENSG00000153827.9|thyroid hormone receptor interactor 12
hg19_v2_chr20_-_56284816_56284958	0.0363889	SOX3_SOX2	ENST00000395819.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000341744.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr11_+_125496619_125496646	0.0363355	SOX3_SOX2	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr5_-_74062867_74062912	0.0362998	SOX3_SOX2	ENST00000509097.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr8_-_6420930_6420957	0.03621	SOX3_SOX2	ENST00000325203.5|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr12_+_45686457_45686482	0.0361426	SOX3_SOX2	ENST00000441606.2|ANO6|ENSG00000177119.11|anoctamin 6
hg19_v2_chr10_+_30722866_30722969	0.0361361	SOX3_SOX2	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr11_+_120255997_120256048	0.0361267	SOX3_SOX2	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr16_+_30406721_30406820	0.0360925	SOX3_SOX2	ENST00000320159.2|ZNF48|ENSG00000180035.6|zinc finger protein 48
hg19_v2_chr6_+_20403997_20404034	0.0360288	SOX3_SOX2	ENST00000535432.1|E2F3|ENSG00000112242.10|E2F transcription factor 3
hg19_v2_chr10_+_180405_180429	0.0359083	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr7_-_24797032_24797162	0.0358695	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr10_+_180643_180764	0.0358642	SOX3_SOX2	ENST00000509513.2|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397959.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr14_+_102414651_102414721	0.0358452	SOX3_SOX2	ENST00000607414.1|RP11-1017G21.5|ENSG00000271780.1|RP11-1017G21.5
hg19_v2_chr22_+_46972975_46973087	0.0358292	SOX3_SOX2	ENST00000431155.1|GRAMD4|ENSG00000075240.12|GRAM domain containing 4
hg19_v2_chr19_+_17416609_17416716	0.0357446	SOX3_SOX2	ENST00000602206.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr4_+_57774042_57774114	0.0357086	SOX3_SOX2	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr3_+_88108381_88108450	0.0356565	SOX3_SOX2	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr17_-_42276574_42276742	0.0355763	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr1_+_104198377_104198377	0.0355525	SOX3_SOX2	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr1_+_66458072_66458109	0.0355179	SOX3_SOX2	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr3_-_176914238_176914277	0.0355045	SOX3_SOX2	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr8_-_12612962_12613049	0.0354619	SOX3_SOX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr1_-_23670817_23670829	0.0354378	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr1_-_177133818_177133872	0.035419	SOX3_SOX2	ENST00000424564.2|ASTN1|ENSG00000152092.11|astrotactin 1 	ENST00000361833.2|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr1_+_100111580_100111773	0.0353163	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr14_-_82089405_82089428	0.0352461	SOX3_SOX2	ENST00000554211.1|RP11-799P8.1|ENSG00000258977.1|RP11-799P8.1
hg19_v2_chr1_+_100818156_100818210	0.0352261	SOX3_SOX2	ENST00000336454.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr1_-_231004220_231004399	0.0351806	SOX3_SOX2	ENST00000366663.5|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr13_+_76334795_76334809	0.0351499	SOX3_SOX2	ENST00000526202.1|LMO7|ENSG00000136153.15|LIM domain 7 	ENST00000465261.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr8_-_66546439_66546451	0.0351317	SOX3_SOX2	ENST00000276569.3|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr16_-_20566616_20566616	0.0350942	SOX3_SOX2	ENST00000569163.1|ACSM2B|ENSG00000066813.10|acyl-CoA synthetase medium-chain family member 2B
hg19_v2_chr5_+_156693159_156693213	0.0350508	SOX3_SOX2	ENST00000347377.6|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr19_+_52772821_52772828	0.0350476	SOX3_SOX2	ENST00000439461.1|ZNF766|ENSG00000196214.6|zinc finger protein 766
hg19_v2_chr2_+_65283529_65283599	0.03496	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr16_-_74455290_74455290	0.0349369	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr16_-_28550320_28550345	0.03488	SOX3_SOX2	ENST00000395641.2|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr6_+_138725343_138725501	0.0348692	SOX3_SOX2	ENST00000607197.1|HEBP2|ENSG00000051620.6|heme binding protein 2 	ENST00000367697.3|HEBP2|ENSG00000051620.6|heme binding protein 2
hg19_v2_chr19_-_17375527_17375538	0.0348477	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr5_-_95158375_95158485	0.0348436	SOX3_SOX2	ENST00000512469.2|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000379979.4|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000505427.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase) 	ENST00000508780.1|GLRX|ENSG00000173221.9|glutaredoxin (thioltransferase)
hg19_v2_chr6_+_97372645_97372665	0.0348396	SOX3_SOX2	ENST00000536676.1|KLHL32|ENSG00000186231.12|kelch-like family member 32 	ENST00000544166.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr9_+_27524283_27524312	0.0348222	SOX3_SOX2	ENST00000276943.2|IFNK|ENSG00000147896.3|interferon, kappa
hg19_v2_chr9_-_115818951_115819011	0.0348065	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chrX_-_47863348_47863412	0.0347593	SOX3_SOX2	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr4_-_186877502_186877563	0.0347421	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr22_-_31688381_31688418	0.0347369	SOX3_SOX2	ENST00000487265.2|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chr4_-_175041663_175041727	0.0346347	SOX3_SOX2	ENST00000503140.1|RP11-148L24.1|ENSG00000248174.1|RP11-148L24.1
hg19_v2_chr3_-_105588231_105588396	0.0345828	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr2_-_224467002_224467085	0.0344738	SOX3_SOX2	ENST00000421386.1|SCG2|ENSG00000171951.4|secretogranin II 	ENST00000433889.1|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr2_-_86422523_86422595	0.0344622	SOX3_SOX2	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr19_+_44100544_44100581	0.0344223	SOX3_SOX2	ENST00000391965.2|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000525771.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr8_-_30585439_30585494	0.034422	SOX3_SOX2	ENST00000221130.5|GSR|ENSG00000104687.8|glutathione reductase
hg19_v2_chr3_-_149095652_149095652	0.0341823	SOX3_SOX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr12_+_133614119_133614166	0.0339961	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr20_+_21284416_21284490	0.0339705	SOX3_SOX2	ENST00000539513.1|XRN2|ENSG00000088930.6|5'-3' exoribonuclease 2
hg19_v2_chr3_+_179280668_179280769	0.0339589	SOX3_SOX2	ENST00000429709.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000450518.2|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000392662.1|ACTL6A|ENSG00000136518.12|actin-like 6A 	ENST00000490364.1|ACTL6A|ENSG00000136518.12|actin-like 6A
hg19_v2_chr2_-_86564776_86564813	0.0338948	SOX3_SOX2	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr15_-_50647370_50647405	0.0338858	SOX3_SOX2	ENST00000558970.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000396464.3|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1 	ENST00000560825.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr4_+_106629929_106629982	0.033853	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr17_-_62502022_62502074	0.0337894	SOX3_SOX2	ENST00000578804.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chrX_+_70503526_70503611	0.0337629	SOX3_SOX2	ENST00000413858.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding 	ENST00000450092.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr1_+_166808667_166808690	0.0337108	SOX3_SOX2	ENST00000537173.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000536514.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain 	ENST00000449930.1|POGK|ENSG00000143157.7|pogo transposable element with KRAB domain
hg19_v2_chr4_-_22517620_22517712	0.0334238	SOX3_SOX2	ENST00000502482.1|GPR125|ENSG00000152990.9|G protein-coupled receptor 125 	ENST00000334304.5|GPR125|ENSG00000152990.9|G protein-coupled receptor 125
hg19_v2_chr1_-_153029980_153030013	0.033389	SOX3_SOX2	ENST00000392653.2|SPRR2A|ENSG00000241794.1|small proline-rich protein 2A
hg19_v2_chr7_+_12727250_12727265	0.0333459	SOX3_SOX2	ENST00000404894.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chrX_-_13835147_13835224	0.0333062	SOX3_SOX2	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr8_-_139926236_139926269	0.0332474	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr5_+_139175380_139175431	0.0331579	SOX3_SOX2	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr10_+_115511434_115511454	0.0331262	SOX3_SOX2	ENST00000369312.4|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr7_+_35840542_35840671	0.0331081	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr9_-_14313893_14313984	0.0330603	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr7_+_29234101_29234130	0.0329887	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr22_-_30970560_30970577	0.0329841	SOX3_SOX2	ENST00000402369.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000406361.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr8_+_22462532_22462597	0.0329335	SOX3_SOX2	ENST00000389279.3|CCAR2|ENSG00000158941.12|cell cycle and apoptosis regulator 2
hg19_v2_chr6_-_31509506_31509544	0.0329139	SOX3_SOX2	ENST00000449757.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr16_+_11762270_11762344	0.0328742	SOX3_SOX2	ENST00000329565.5|SNN|ENSG00000184602.5|stannin
hg19_v2_chr14_-_61191049_61191080	0.0328606	SOX3_SOX2	ENST00000556952.3|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr19_+_24009879_24009921	0.0328598	SOX3_SOX2	ENST00000354585.4|RPSAP58|ENSG00000205246.4|ribosomal protein SA pseudogene 58
hg19_v2_chr1_+_201952458_201952534	0.0328098	SOX3_SOX2	ENST00000447312.1|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chr2_-_190649023_190649081	0.0327554	SOX3_SOX2	ENST00000409519.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000458355.1|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr1_-_235814048_235814067	0.0327171	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr3_+_184038234_184038258	0.0327126	SOX3_SOX2	ENST00000427607.1|EIF4G1|ENSG00000114867.15|eukaryotic translation initiation factor 4 gamma, 1 	ENST00000457456.1|EIF4G1|ENSG00000114867.15|eukaryotic translation initiation factor 4 gamma, 1
hg19_v2_chr9_+_109694914_109694927	0.0326973	SOX3_SOX2	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr20_+_58203664_58203713	0.0325702	SOX3_SOX2	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chrX_+_69509870_69509908	0.0325517	SOX3_SOX2	ENST00000374388.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr2_+_157330081_157330104	0.0325475	SOX3_SOX2	ENST00000409674.1|GPD2|ENSG00000115159.11|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
hg19_v2_chr20_+_61448376_61448418	0.0324932	SOX3_SOX2	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr9_+_127023704_127023756	0.0324668	SOX3_SOX2	ENST00000373596.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6 	ENST00000425237.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr3_-_69101461_69101494	0.0324622	SOX3_SOX2	ENST00000543976.1|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr19_-_8213753_8213753	0.0324451	SOX3_SOX2	ENST00000601739.1|FBN3|ENSG00000142449.8|fibrillin 3
hg19_v2_chr15_-_47426320_47426320	0.0324391	SOX3_SOX2	ENST00000557832.1|FKSG62|ENSG00000259752.1|FKSG62
hg19_v2_chr4_+_113568207_113568367	0.0324236	SOX3_SOX2	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr19_-_58514129_58514205	0.0324129	SOX3_SOX2	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr13_-_111567353_111567432	0.0324043	SOX3_SOX2	ENST00000310847.4|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000267339.2|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10 	ENST00000375758.5|ANKRD10|ENSG00000088448.10|ankyrin repeat domain 10
hg19_v2_chr11_-_75062829_75062951	0.0323971	SOX3_SOX2	ENST00000393505.4|ARRB1|ENSG00000137486.12|arrestin, beta 1
hg19_v2_chr10_-_30024716_30024739	0.0323539	SOX3_SOX2	ENST00000375398.2|SVIL|ENSG00000197321.10|supervillin 	ENST00000375400.3|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr2_-_238499337_238499423	0.0322216	SOX3_SOX2	ENST00000411462.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family 	ENST00000409822.1|RAB17|ENSG00000124839.8|RAB17, member RAS oncogene family
hg19_v2_chr6_-_127664683_127664718	0.0321803	SOX3_SOX2	ENST00000528402.1|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454591.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr19_+_35810164_35810291	0.0320971	SOX3_SOX2	ENST00000598537.1|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr1_-_156023580_156023605	0.0320416	SOX3_SOX2	ENST00000368309.3|UBQLN4|ENSG00000160803.7|ubiquilin 4
hg19_v2_chr7_-_99698338_99698492	0.0319299	SOX3_SOX2	ENST00000354230.3|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000425308.1|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chr7_+_129710350_129710434	0.0318404	SOX3_SOX2	ENST00000335420.5|KLHDC10|ENSG00000128607.9|kelch domain containing 10 	ENST00000463413.1|KLHDC10|ENSG00000128607.9|kelch domain containing 10
hg19_v2_chr10_+_76585303_76585354	0.0317939	SOX3_SOX2	ENST00000372725.1|KAT6B|ENSG00000156650.8|K(lysine) acetyltransferase 6B
hg19_v2_chr2_+_99953816_99953894	0.031755	SOX3_SOX2	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr2_-_37551846_37551952	0.0317153	SOX3_SOX2	ENST00000443187.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr20_-_34252759_34252843	0.0317043	SOX3_SOX2	ENST00000414711.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000416778.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397442.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000440240.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000412056.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000352393.4|CPNE1|ENSG00000214078.7|copine I 	ENST00000359646.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000458038.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000424458.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000420363.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000434795.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374104.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437100.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000414664.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000374114.3|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr12_-_56120865_56120912	0.0316592	SOX3_SOX2	ENST00000548898.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000552067.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr5_-_115910091_115910141	0.031647	SOX3_SOX2	ENST00000257414.8|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr4_-_83483094_83483165	0.0316005	SOX3_SOX2	ENST00000508701.1|TMEM150C|ENSG00000249242.3|transmembrane protein 150C 	ENST00000454948.3|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr10_-_62332357_62332428	0.0315922	SOX3_SOX2	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_-_111136299_111136352	0.0315599	SOX3_SOX2	ENST00000457688.1|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chrX_+_46306714_46306741	0.0315437	SOX3_SOX2	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr5_-_147211190_147211219	0.0314434	SOX3_SOX2	ENST00000510027.2|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr10_-_106240032_106240047	0.031295	SOX3_SOX2	ENST00000447860.1|RP11-127O4.3|ENSG00000225768.1|RP11-127O4.3
hg19_v2_chr10_+_123923105_123923160	0.0312484	SOX3_SOX2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr1_-_35658736_35658754	0.0312124	SOX3_SOX2	ENST00000357214.5|SFPQ|ENSG00000116560.6|splicing factor proline/glutamine-rich
hg19_v2_chr2_+_202098166_202098202	0.0312034	SOX3_SOX2	ENST00000392263.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264274.9|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392259.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392266.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000432109.2|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000264275.5|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr12_+_109915179_109915220	0.0311829	SOX3_SOX2	ENST00000434735.2|UBE3B|ENSG00000151148.9|ubiquitin protein ligase E3B
hg19_v2_chr6_-_46048116_46048132	0.0311208	SOX3_SOX2	ENST00000185206.6|CLIC5|ENSG00000112782.11|chloride intracellular channel 5
hg19_v2_chr19_+_17416457_17416477	0.0310343	SOX3_SOX2	ENST00000252602.1|MRPL34|ENSG00000130312.2|mitochondrial ribosomal protein L34
hg19_v2_chr4_+_4388805_4388855	0.0310332	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr2_+_9346892_9346948	0.0309739	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr5_+_148521454_148521610	0.0308544	SOX3_SOX2	ENST00000508983.1|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr11_-_119991589_119991609	0.0308513	SOX3_SOX2	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr15_+_33603147_33603187	0.0307983	SOX3_SOX2	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr3_+_186915274_186915274	0.0307788	SOX3_SOX2	ENST00000312295.4|RTP1|ENSG00000175077.5|receptor (chemosensory) transporter protein 1
hg19_v2_chr13_+_34392185_34392191	0.0306567	SOX3_SOX2	ENST00000380071.3|RFC3|ENSG00000133119.8|replication factor C (activator 1) 3, 38kDa
hg19_v2_chr4_-_7941596_7941653	0.0305856	SOX3_SOX2	ENST00000420658.1|AFAP1|ENSG00000196526.6|actin filament associated protein 1 	ENST00000358461.2|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr17_-_30669138_30669208	0.0305032	SOX3_SOX2	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chrX_-_45629661_45629677	0.0304929	SOX3_SOX2	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr6_+_31865552_31865575	0.0304863	SOX3_SOX2	ENST00000469372.1|C2|ENSG00000166278.10|complement component 2 	ENST00000497706.1|C2|ENSG00000166278.10|complement component 2
hg19_v2_chr7_+_29234375_29234558	0.030388	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr3_-_195270162_195270209	0.0303469	SOX3_SOX2	ENST00000438848.1|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2 	ENST00000328432.3|PPP1R2|ENSG00000184203.3|protein phosphatase 1, regulatory (inhibitor) subunit 2
hg19_v2_chr6_-_111888474_111888563	0.03034	SOX3_SOX2	ENST00000368735.1|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr11_-_94965667_94965705	0.0302669	SOX3_SOX2	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr11_+_237016_237032	0.0301979	SOX3_SOX2	ENST00000352303.5|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr11_-_10562710_10562782	0.0301877	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr11_+_19798964_19799013	0.0301363	SOX3_SOX2	ENST00000527559.2|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr2_-_178128149_178128198	0.0301274	SOX3_SOX2	ENST00000423513.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr1_-_155947951_155947974	0.0301212	SOX3_SOX2	ENST00000313695.7|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2 	ENST00000497907.1|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr2_+_102314161_102314206	0.0300573	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr18_+_56530794_56530845	0.0300515	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr10_+_102106829_102106881	0.0298202	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr12_-_8815477_8815490	0.0298198	SOX3_SOX2	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr10_+_93683519_93683594	0.029738	SOX3_SOX2	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr1_+_54703710_54703710	0.0296935	SOX3_SOX2	ENST00000361350.4|SSBP3-AS1|ENSG00000198711.4|SSBP3 antisense RNA 1
hg19_v2_chr6_-_30654977_30655009	0.0296833	SOX3_SOX2	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr5_+_125935960_125935960	0.0296724	SOX3_SOX2	ENST00000297540.4|PHAX|ENSG00000164902.9|phosphorylated adaptor for RNA export
hg19_v2_chr18_+_32073253_32073339	0.0296664	SOX3_SOX2	ENST00000283365.9|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000596745.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000315456.6|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr1_-_177134024_177134052	0.0295622	SOX3_SOX2	ENST00000367654.3|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr17_+_8339164_8339186	0.0294573	SOX3_SOX2	ENST00000582665.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000334527.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000299734.7|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr3_+_16926441_16926463	0.0294428	SOX3_SOX2	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr4_+_41258786_41258962	0.0294312	SOX3_SOX2	ENST00000503431.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000284440.4|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000508768.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000512788.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
hg19_v2_chr11_+_86511569_86511599	0.0292673	SOX3_SOX2	ENST00000441050.1|PRSS23|ENSG00000150687.7|protease, serine, 23
hg19_v2_chr6_+_160183492_160183523	0.029233	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr4_-_10459009_10459061	0.0291107	SOX3_SOX2	ENST00000507515.1|ZNF518B|ENSG00000178163.3|zinc finger protein 518B
hg19_v2_chr5_-_74062930_74062980	0.0290729	SOX3_SOX2	ENST00000509430.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000345239.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000427854.2|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2 	ENST00000506778.1|GFM2|ENSG00000164347.13|G elongation factor, mitochondrial 2
hg19_v2_chr15_+_57210818_57210930	0.0290653	SOX3_SOX2	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr11_-_85430356_85430420	0.0290275	SOX3_SOX2	ENST00000526999.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr7_+_138145076_138145116	0.0290162	SOX3_SOX2	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr10_+_89622870_89622870	0.0289698	SOX3_SOX2	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr3_-_101232019_101232085	0.0289535	SOX3_SOX2	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr10_-_97321165_97321176	0.0289101	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr15_-_83876758_83876770	0.0288693	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr10_-_75410771_75410813	0.0288632	SOX3_SOX2	ENST00000372873.4|SYNPO2L|ENSG00000166317.7|synaptopodin 2-like
hg19_v2_chr14_-_89021077_89021230	0.028759	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr22_-_45404819_45404874	0.0285939	SOX3_SOX2	ENST00000447824.3|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000404079.2|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000420689.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000403565.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B
hg19_v2_chr17_+_26698677_26698732	0.0285206	SOX3_SOX2	ENST00000457710.3|SARM1|ENSG00000004139.9|sterile alpha and TIR motif containing 1
hg19_v2_chrX_-_85302531_85302570	0.0285128	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr7_-_142583506_142583510	0.0284305	SOX3_SOX2	ENST00000359396.3|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr14_+_100259666_100259685	0.0284016	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr12_-_56123444_56123491	0.0283809	SOX3_SOX2	ENST00000546457.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000549117.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr7_+_134464414_134464429	0.0283179	SOX3_SOX2	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr12_-_82152420_82152441	0.0282734	SOX3_SOX2	ENST00000552948.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000548586.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr10_+_11206925_11206993	0.0282671	SOX3_SOX2	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr12_+_7456880_7456880	0.0281708	SOX3_SOX2	ENST00000399422.4|ACSM4|ENSG00000215009.5|acyl-CoA synthetase medium-chain family member 4
hg19_v2_chr2_+_228336849_228336904	0.0281582	SOX3_SOX2	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr7_-_27219632_27219660	0.028124	SOX3_SOX2	ENST00000470747.4|RP1-170O19.20|ENSG00000257184.2|Uncharacterized protein
hg19_v2_chr12_-_56615693_56615758	0.0281026	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr1_-_31902614_31902614	0.028086	SOX3_SOX2	ENST00000596131.1|AC114494.1|ENSG00000268950.1|HCG1787699; Uncharacterized protein
hg19_v2_chr1_-_28520447_28520453	0.0279735	SOX3_SOX2	ENST00000539896.1|PTAFR|ENSG00000169403.7|platelet-activating factor receptor
hg19_v2_chr10_-_105845674_105845760	0.0279654	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr5_+_86563636_86563712	0.0279485	SOX3_SOX2	ENST00000274376.6|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr4_+_144312659_144312668	0.0278986	SOX3_SOX2	ENST00000509992.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr9_+_12685439_12685491	0.0278259	SOX3_SOX2	ENST00000473763.1|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr2_+_220309379_220309413	0.0278046	SOX3_SOX2	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr6_-_31619742_31619778	0.0277574	SOX3_SOX2	ENST00000433828.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456286.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr4_-_28404486_28404533	0.0276669	SOX3_SOX2	ENST00000515720.1|RP11-180C1.1|ENSG00000250038.1|Uncharacterized protein
hg19_v2_chr15_+_93443419_93443580	0.0276011	SOX3_SOX2	ENST00000557381.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2 	ENST00000420239.2|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr5_-_39425290_39425336	0.0275608	SOX3_SOX2	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr17_+_75452447_75452460	0.0275558	SOX3_SOX2	ENST00000591472.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr12_-_57882577_57882614	0.0275083	SOX3_SOX2	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr19_-_47349395_47349412	0.0274663	SOX3_SOX2	ENST00000597020.1|AP2S1|ENSG00000042753.7|adaptor-related protein complex 2, sigma 1 subunit
hg19_v2_chr4_+_71570430_71570536	0.0274268	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr2_+_181845074_181845118	0.0273885	SOX3_SOX2	ENST00000602959.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602479.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000392415.2|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3 	ENST00000602291.1|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr12_+_122326662_122326768	0.0273762	SOX3_SOX2	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr3_-_52486841_52486882	0.0273422	SOX3_SOX2	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chr9_+_125795788_125795957	0.0273017	SOX3_SOX2	ENST00000373643.5|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr17_-_7145106_7145172	0.0271706	SOX3_SOX2	ENST00000577035.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr1_-_21503337_21503407	0.0270685	SOX3_SOX2	ENST00000400422.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000602326.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000411888.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3 	ENST00000438975.1|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr20_-_43150601_43150751	0.0270018	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr7_-_148725544_148725630	0.0269844	SOX3_SOX2	ENST00000413966.1|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr20_-_14318248_14318264	0.0269257	SOX3_SOX2	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr1_-_41487383_41487402	0.0269188	SOX3_SOX2	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr10_-_27530997_27531065	0.0268824	SOX3_SOX2	ENST00000375901.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000412279.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000375905.4|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr7_-_140340098_140340169	0.026855	SOX3_SOX2	ENST00000477488.1|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A
hg19_v2_chr17_-_76921459_76921478	0.0268531	SOX3_SOX2	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr16_+_1203194_1203241	0.0268447	SOX3_SOX2	ENST00000348261.5|CACNA1H|ENSG00000196557.6|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENST00000358590.4|CACNA1H|ENSG00000196557.6|calcium channel, voltage-dependent, T type, alpha 1H subunit
hg19_v2_chr4_+_62067860_62067900	0.0268075	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chrX_+_105937068_105937091	0.0268016	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr11_-_118927561_118927665	0.0267564	SOX3_SOX2	ENST00000530473.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr8_+_73449625_73449668	0.0266735	SOX3_SOX2	ENST00000523207.1|KCNB2|ENSG00000182674.5|potassium voltage-gated channel, Shab-related subfamily, member 2
hg19_v2_chr5_+_137514687_137514774	0.0266493	SOX3_SOX2	ENST00000394894.3|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr11_-_117747434_117747453	0.0266032	SOX3_SOX2	ENST00000529335.2|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000530956.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000260282.4|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6
hg19_v2_chr3_+_127348005_127348063	0.0265595	SOX3_SOX2	ENST00000342480.6|PODXL2|ENSG00000114631.10|podocalyxin-like 2
hg19_v2_chr5_-_168006591_168006638	0.0265255	SOX3_SOX2	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr6_+_28092338_28092412	0.0265199	SOX3_SOX2	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr2_-_183387430_183387465	0.0264563	SOX3_SOX2	ENST00000410103.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr12_+_22778116_22778139	0.0264215	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr2_+_75061108_75061265	0.0263648	SOX3_SOX2	ENST00000290573.2|HK2|ENSG00000159399.5|hexokinase 2
hg19_v2_chr14_+_24779376_24779394	0.0262986	SOX3_SOX2	ENST00000530080.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chr12_-_6772249_6772297	0.0262606	SOX3_SOX2	ENST00000467678.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000493873.1|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000423703.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000412586.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4 	ENST00000444704.2|ING4|ENSG00000111653.15|inhibitor of growth family, member 4
hg19_v2_chr9_-_35072585_35072632	0.0262503	SOX3_SOX2	ENST00000448530.1|VCP|ENSG00000165280.11|valosin containing protein
hg19_v2_chr5_+_65222500_65222601	0.0262366	SOX3_SOX2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr16_-_19533404_19533467	0.0262034	SOX3_SOX2	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr7_+_11013491_11013553	0.0261997	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr10_-_25012115_25012174	0.0261807	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr2_-_27434756_27434898	0.0260928	SOX3_SOX2	ENST00000426119.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 	ENST00000412471.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
hg19_v2_chr12_-_18890940_18890991	0.0260349	SOX3_SOX2	ENST00000543242.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000539072.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000541966.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000266505.7|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000447925.2|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000435379.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1
hg19_v2_chr14_+_52456327_52456344	0.0259762	SOX3_SOX2	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr6_+_21666633_21666681	0.0259649	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr4_+_154074217_154074270	0.0258512	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr2_-_208031943_208031991	0.0258425	SOX3_SOX2	ENST00000421199.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous) 	ENST00000457962.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr2_-_106015491_106015518	0.025832	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr2_+_219524473_219524495	0.0258219	SOX3_SOX2	ENST00000439945.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like 	ENST00000431802.1|BCS1L|ENSG00000074582.8|BC1 (ubiquinol-cytochrome c reductase) synthesis-like
hg19_v2_chr9_+_36036430_36036430	0.025671	SOX3_SOX2	ENST00000377966.3|RECK|ENSG00000122707.7|reversion-inducing-cysteine-rich protein with kazal motifs
hg19_v2_chr12_-_125401885_125401914	0.0256311	SOX3_SOX2	ENST00000542416.1|UBC|ENSG00000150991.10|ubiquitin C
hg19_v2_chr10_+_114710425_114710470	0.0256263	SOX3_SOX2	ENST00000352065.5|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000369395.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr7_+_105603738_105603753	0.0255722	SOX3_SOX2	ENST00000541203.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr7_-_75988321_75988348	0.0254572	SOX3_SOX2	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr14_+_85996471_85996497	0.0253976	SOX3_SOX2	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chrX_-_77041685_77041716	0.0253885	SOX3_SOX2	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr1_+_64239657_64239724	0.0253443	SOX3_SOX2	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr3_+_134514093_134514169	0.0253233	SOX3_SOX2	ENST00000398015.3|EPHB1|ENSG00000154928.12|EPH receptor B1
hg19_v2_chr9_+_125703282_125703337	0.025302	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr5_+_66300446_66300463	0.0252392	SOX3_SOX2	ENST00000261569.7|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr17_-_44270270_44270337	0.0252279	SOX3_SOX2	ENST00000572904.1|KANSL1|ENSG00000120071.8|KAT8 regulatory NSL complex subunit 1
hg19_v2_chr12_+_50898881_50898907	0.0252201	SOX3_SOX2	ENST00000301180.5|DIP2B|ENSG00000066084.8|DIP2 disco-interacting protein 2 homolog B (Drosophila)
hg19_v2_chr15_+_32322685_32322701	0.0251873	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr18_-_28682374_28682415	0.0251548	SOX3_SOX2	ENST00000280904.6|DSC2|ENSG00000134755.10|desmocollin 2
hg19_v2_chr3_-_18466026_18466065	0.0251121	SOX3_SOX2	ENST00000417717.2|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr14_-_88459503_88459615	0.0250848	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr22_-_50221160_50221160	0.0250802	SOX3_SOX2	ENST00000404760.1|BRD1|ENSG00000100425.14|bromodomain containing 1
hg19_v2_chr1_+_171154347_171154389	0.0250744	SOX3_SOX2	ENST00000209929.7|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional) 	ENST00000441535.1|FMO2|ENSG00000094963.9|flavin containing monooxygenase 2 (non-functional)
hg19_v2_chr8_+_110346546_110346619	0.0250102	SOX3_SOX2	ENST00000521662.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000521688.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila) 	ENST00000520147.1|ENY2|ENSG00000120533.8|enhancer of yellow 2 homolog (Drosophila)
hg19_v2_chr12_-_54653313_54653416	0.0249656	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr12_-_99288536_99288677	0.0249209	SOX3_SOX2	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr12_+_50144381_50144455	0.0249066	SOX3_SOX2	ENST00000552370.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr1_-_113247543_113247770	0.0248832	SOX3_SOX2	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr17_+_25621102_25621157	0.0247918	SOX3_SOX2	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr14_-_95624227_95624347	0.0247909	SOX3_SOX2	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr20_-_50479451_50479469	0.0247539	SOX3_SOX2	ENST00000438154.1|RP5-1112F19.2|ENSG00000227964.1|RP5-1112F19.2
hg19_v2_chr4_-_80994471_80994485	0.0246649	SOX3_SOX2	ENST00000295465.4|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr13_+_76210448_76210494	0.0246576	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr8_-_128960591_128960591	0.0246324	SOX3_SOX2	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr3_-_149688896_149688970	0.0245881	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr12_+_104337515_104337574	0.0244632	SOX3_SOX2	ENST00000550595.1|HSP90B1|ENSG00000166598.8|heat shock protein 90kDa beta (Grp94), member 1
hg19_v2_chr16_-_8962853_8962878	0.0244563	SOX3_SOX2	ENST00000565287.1|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa 	ENST00000311052.5|CARHSP1|ENSG00000153048.6|calcium regulated heat stable protein 1, 24kDa
hg19_v2_chr17_-_76719807_76719832	0.024376	SOX3_SOX2	ENST00000589297.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr1_+_25757376_25757411	0.0243679	SOX3_SOX2	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr5_+_56205081_56205092	0.0242592	SOX3_SOX2	ENST00000285947.2|SETD9|ENSG00000155542.7|SET domain containing 9 	ENST00000541720.1|SETD9|ENSG00000155542.7|SET domain containing 9
hg19_v2_chr13_-_45150392_45150472	0.0242129	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr4_+_144258288_144258353	0.0241778	SOX3_SOX2	ENST00000514639.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr2_+_70142232_70142320	0.0241695	SOX3_SOX2	ENST00000540449.1|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr4_-_139163491_139163510	0.0239085	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr8_+_63161491_63161522	0.0238803	SOX3_SOX2	ENST00000523211.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3 	ENST00000524201.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr8_-_110620284_110620304	0.0238768	SOX3_SOX2	ENST00000529690.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr19_-_16582815_16582896	0.0237075	SOX3_SOX2	ENST00000455140.2|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000248070.6|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1 	ENST00000594975.1|EPS15L1|ENSG00000127527.9|epidermal growth factor receptor pathway substrate 15-like 1
hg19_v2_chr14_-_80697396_80697402	0.023607	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr7_-_107643674_107643700	0.0235468	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr11_-_111649074_111649123	0.0235349	SOX3_SOX2	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr5_-_83680603_83680617	0.0235227	SOX3_SOX2	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr6_+_10633993_10633993	0.0235013	SOX3_SOX2	ENST00000417671.1|GCNT6|ENSG00000205318.3|glucosaminyl (N-acetyl) transferase 6
hg19_v2_chr15_+_69373210_69373239	0.0233747	SOX3_SOX2	ENST00000435479.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000559870.1|RP11-809H16.5|ENSG00000259222.1|RP11-809H16.5
hg19_v2_chr14_-_65569057_65569119	0.0233656	SOX3_SOX2	ENST00000555419.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000341653.2|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr5_+_134094461_134094494	0.0233152	SOX3_SOX2	ENST00000452510.2|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENST00000354283.4|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
hg19_v2_chr3_-_172312460_172312516	0.0232999	SOX3_SOX2	ENST00000418839.2|RP11-408H1.3|ENSG00000223387.2|RP11-408H1.3
hg19_v2_chr19_-_23578220_23578362	0.0232405	SOX3_SOX2	ENST00000595533.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000397082.2|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000599743.1|ZNF91|ENSG00000167232.9|zinc finger protein 91 	ENST00000300619.7|ZNF91|ENSG00000167232.9|zinc finger protein 91
hg19_v2_chr13_-_36920615_36920659	0.0232368	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr10_+_106028923_106028956	0.0231497	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr2_+_10183651_10183713	0.0231476	SOX3_SOX2	ENST00000305883.1|KLF11|ENSG00000172059.6|Kruppel-like factor 11
hg19_v2_chr7_+_50344289_50344378	0.0231443	SOX3_SOX2	ENST00000413698.1|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000359197.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000331340.3|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000357364.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000343574.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000349824.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000346667.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000440768.2|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros)
hg19_v2_chr17_-_73150599_73150616	0.0230851	SOX3_SOX2	ENST00000392566.2|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000581874.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr15_+_63335899_63336001	0.023028	SOX3_SOX2	ENST00000561266.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr15_+_84115868_84115980	0.0230254	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr12_-_99548524_99548550	0.0229669	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr3_+_191046810_191046874	0.0229534	SOX3_SOX2	ENST00000392455.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50 	ENST00000392456.3|CCDC50|ENSG00000152492.9|coiled-coil domain containing 50
hg19_v2_chr14_+_23791159_23791231	0.0229522	SOX3_SOX2	ENST00000557702.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr4_-_52904425_52904471	0.0228825	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr10_-_11574274_11574428	0.0228538	SOX3_SOX2	ENST00000277575.5|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr12_-_7281469_7281538	0.0228522	SOX3_SOX2	ENST00000542370.1|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular 	ENST00000266560.3|RBP5|ENSG00000139194.3|retinol binding protein 5, cellular
hg19_v2_chr6_-_31509714_31509795	0.022809	SOX3_SOX2	ENST00000456662.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000431908.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000456976.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428450.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000453105.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000418897.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000415382.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000449074.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000419020.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENST00000428098.1|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr14_+_24779340_24779371	0.0227829	SOX3_SOX2	ENST00000533293.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2 	ENST00000543919.1|LTB4R2|ENSG00000213906.5|leukotriene B4 receptor 2
hg19_v2_chr4_+_144258021_144258052	0.0227826	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr7_+_116660246_116660336	0.0227348	SOX3_SOX2	ENST00000434836.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393443.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000465133.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000477742.1|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393447.4|ST7|ENSG00000004866.14|suppression of tumorigenicity 7 	ENST00000393444.3|ST7|ENSG00000004866.14|suppression of tumorigenicity 7
hg19_v2_chr6_+_36410762_36410858	0.0227142	SOX3_SOX2	ENST00000483557.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000498267.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000544295.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000449081.2|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000536244.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20 	ENST00000460983.1|KCTD20|ENSG00000112078.9|potassium channel tetramerization domain containing 20
hg19_v2_chr11_+_125034586_125034604	0.022538	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr1_-_45672221_45672260	0.0224922	SOX3_SOX2	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chr12_+_133613937_133613994	0.022099	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr1_+_70687137_70687200	0.0220557	SOX3_SOX2	ENST00000436161.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr5_+_125800836_125800850	0.0219757	SOX3_SOX2	ENST00000511134.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr8_+_102504979_102505010	0.0219266	SOX3_SOX2	ENST00000395927.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr12_-_82152444_82152475	0.0218685	SOX3_SOX2	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr16_-_30394143_30394171	0.0218634	SOX3_SOX2	ENST00000321367.3|SEPT1|ENSG00000180096.7|septin 1 	ENST00000571393.1|SEPT1|ENSG00000180096.7|septin 1
hg19_v2_chr6_+_159291090_159291223	0.0218044	SOX3_SOX2	ENST00000367073.4|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99 	ENST00000608817.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr6_+_43266063_43266097	0.0217779	SOX3_SOX2	ENST00000372574.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chr13_-_107220455_107220517	0.0217593	SOX3_SOX2	ENST00000400198.3|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr18_+_59415396_59415427	0.0217443	SOX3_SOX2	ENST00000567801.1|RP11-1096D5.1|ENSG00000260440.1|RP11-1096D5.1
hg19_v2_chr4_+_699610_699732	0.0217317	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr3_+_123813509_123813528	0.0217144	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr5_+_156693091_156693150	0.0217121	SOX3_SOX2	ENST00000318218.6|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2 	ENST00000442283.2|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2 	ENST00000522463.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2 	ENST00000521420.1|CYFIP2|ENSG00000055163.14|cytoplasmic FMR1 interacting protein 2
hg19_v2_chr5_-_14871866_14871916	0.0216388	SOX3_SOX2	ENST00000284268.6|ANKH|ENSG00000154122.8|ANKH inorganic pyrophosphate transport regulator
hg19_v2_chr6_-_46459099_46459132	0.0216372	SOX3_SOX2	ENST00000371374.1|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr17_-_74287333_74287333	0.0216159	SOX3_SOX2	ENST00000447564.2|QRICH2|ENSG00000129646.9|glutamine rich 2
hg19_v2_chr2_-_208031542_208031595	0.0216127	SOX3_SOX2	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr4_+_144434584_144434709	0.0215905	SOX3_SOX2	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr7_+_102191679_102191679	0.0215723	SOX3_SOX2	ENST00000507918.1|SPDYE2|ENSG00000205238.5|speedy/RINGO cell cycle regulator family member E2 	ENST00000432940.1|SPDYE2|ENSG00000205238.5|speedy/RINGO cell cycle regulator family member E2
hg19_v2_chr9_-_36400857_36400902	0.0215636	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr13_-_103053946_103054124	0.0215366	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr1_-_114301503_114301576	0.0214529	SOX3_SOX2	ENST00000447664.2|PHTF1|ENSG00000116793.11|putative homeodomain transcription factor 1
hg19_v2_chr1_-_113160826_113160844	0.0214361	SOX3_SOX2	ENST00000538187.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like 	ENST00000369664.1|ST7L|ENSG00000007341.14|suppression of tumorigenicity 7 like
hg19_v2_chr6_+_36562132_36562154	0.0214303	SOX3_SOX2	ENST00000373715.6|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3 	ENST00000339436.7|SRSF3|ENSG00000112081.12|serine/arginine-rich splicing factor 3
hg19_v2_chr13_+_113030658_113030702	0.0214123	SOX3_SOX2	ENST00000414180.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7 	ENST00000443541.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr1_-_115300579_115300590	0.0211382	SOX3_SOX2	ENST00000358528.4|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525132.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr2_-_232329186_232329305	0.0210581	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr4_+_83351791_83351802	0.0209804	SOX3_SOX2	ENST00000509635.1|ENOPH1|ENSG00000145293.10|enolase-phosphatase 1
hg19_v2_chr7_+_87257701_87257770	0.020966	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr16_+_72459838_72459857	0.0209283	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr6_-_32811771_32811831	0.020907	SOX3_SOX2	ENST00000395339.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8 	ENST00000374882.3|PSMB8|ENSG00000204264.4|proteasome (prosome, macropain) subunit, beta type, 8
hg19_v2_chr11_+_236959_237015	0.0208981	SOX3_SOX2	ENST00000431206.2|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENST00000528906.1|PSMD13|ENSG00000185627.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
hg19_v2_chr6_+_151042224_151042241	0.0208566	SOX3_SOX2	ENST00000358517.2|PLEKHG1|ENSG00000120278.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
hg19_v2_chr14_-_23451845_23451856	0.0208499	SOX3_SOX2	ENST00000262713.2|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chrX_-_139866723_139866723	0.0208415	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr6_-_130536774_130536792	0.0207839	SOX3_SOX2	ENST00000532763.1|SAMD3|ENSG00000164483.12|sterile alpha motif domain containing 3
hg19_v2_chr13_-_107187462_107187462	0.0207585	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr12_-_8803128_8803164	0.0207469	SOX3_SOX2	ENST00000543467.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr17_+_19186292_19186414	0.0206602	SOX3_SOX2	ENST00000395626.1|EPN2|ENSG00000072134.11|epsin 2 	ENST00000571254.1|EPN2|ENSG00000072134.11|epsin 2
hg19_v2_chr19_-_3029011_3029174	0.0206368	SOX3_SOX2	ENST00000590536.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000587137.1|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000455444.2|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) 	ENST00000262953.6|TLE2|ENSG00000065717.10|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)
hg19_v2_chr22_+_30792846_30792978	0.0206236	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr13_+_98795505_98795522	0.0205964	SOX3_SOX2	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chrX_+_51927919_51927991	0.0205366	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr8_-_6420759_6420775	0.0205268	SOX3_SOX2	ENST00000523120.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr14_-_65569186_65569243	0.0205255	SOX3_SOX2	ENST00000555932.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358664.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000284165.6|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000358402.4|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000246163.2|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556979.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000555667.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000557746.1|MAX|ENSG00000125952.14|MYC associated factor X 	ENST00000556443.1|MAX|ENSG00000125952.14|MYC associated factor X
hg19_v2_chr3_-_128207349_128207386	0.0204156	SOX3_SOX2	ENST00000487848.1|GATA2|ENSG00000179348.7|GATA binding protein 2
hg19_v2_chr2_+_70142189_70142223	0.0203582	SOX3_SOX2	ENST00000264444.2|MXD1|ENSG00000059728.6|MAX dimerization protein 1
hg19_v2_chr14_-_102976091_102976133	0.0203451	SOX3_SOX2	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr1_-_37499726_37499850	0.020328	SOX3_SOX2	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chr7_+_99613212_99613236	0.0202914	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chrX_-_73834449_73834481	0.0202771	SOX3_SOX2	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr16_+_29819096_29819250	0.0202736	SOX3_SOX2	ENST00000568411.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor) 	ENST00000563012.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor) 	ENST00000562557.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr6_-_127664736_127664773	0.0202669	SOX3_SOX2	ENST00000368291.2|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000309620.9|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1 	ENST00000454859.3|ECHDC1|ENSG00000093144.14|enoyl CoA hydratase domain containing 1
hg19_v2_chr3_+_107241783_107241850	0.0200477	SOX3_SOX2	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr10_+_47894023_47894023	0.0200325	SOX3_SOX2	ENST00000358474.5|FAM21B|ENSG00000152726.14|family with sequence similarity 21, member B
hg19_v2_chr8_+_95835438_95835537	0.0200125	SOX3_SOX2	ENST00000521860.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519457.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000519053.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000523731.1|INTS8|ENSG00000164941.9|integrator complex subunit 8 	ENST00000447247.1|INTS8|ENSG00000164941.9|integrator complex subunit 8
hg19_v2_chr22_-_31688431_31688520	0.0199582	SOX3_SOX2	ENST00000402249.3|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000443175.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000215912.5|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1 	ENST00000441972.1|PIK3IP1|ENSG00000100100.8|phosphoinositide-3-kinase interacting protein 1
hg19_v2_chrX_+_135229559_135229576	0.0199231	SOX3_SOX2	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr2_+_66662249_66662267	0.0199101	SOX3_SOX2	ENST00000560281.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr10_-_99094458_99094500	0.0199009	SOX3_SOX2	ENST00000371019.2|FRAT2|ENSG00000181274.5|frequently rearranged in advanced T-cell lymphomas 2
hg19_v2_chr6_+_155537771_155537868	0.019823	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr17_+_48503519_48503597	0.0197427	SOX3_SOX2	ENST00000300441.4|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000541920.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000506582.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000504392.1|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2 	ENST00000427954.2|ACSF2|ENSG00000167107.8|acyl-CoA synthetase family member 2
hg19_v2_chr14_-_105487381_105487485	0.0196844	SOX3_SOX2	ENST00000392590.3|CDCA4|ENSG00000170779.10|cell division cycle associated 4 	ENST00000336219.3|CDCA4|ENSG00000170779.10|cell division cycle associated 4
hg19_v2_chr19_+_57791806_57791875	0.0196345	SOX3_SOX2	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr12_+_51818749_51818901	0.01963	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr2_-_20550382_20550413	0.0195291	SOX3_SOX2	ENST00000536417.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr6_-_31632962_31632997	0.0195253	SOX3_SOX2	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr5_+_110427983_110428087	0.0194883	SOX3_SOX2	ENST00000513710.2|WDR36|ENSG00000134987.7|WD repeat domain 36 	ENST00000505303.1|WDR36|ENSG00000134987.7|WD repeat domain 36
hg19_v2_chr17_+_27369918_27370010	0.0194602	SOX3_SOX2	ENST00000323372.4|PIPOX|ENSG00000179761.7|pipecolic acid oxidase
hg19_v2_chrX_-_63005405_63005440	0.0194501	SOX3_SOX2	ENST00000374878.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000437457.2|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chrX_+_70435044_70435109	0.0194089	SOX3_SOX2	ENST00000374029.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000374022.3|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000447581.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr1_-_214638146_214638146	0.0193698	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr19_+_34287751_34287807	0.0193376	SOX3_SOX2	ENST00000590771.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000589786.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000284006.6|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15 	ENST00000588881.1|KCTD15|ENSG00000153885.10|potassium channel tetramerization domain containing 15
hg19_v2_chr8_-_95908902_95908927	0.0193361	SOX3_SOX2	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr19_+_48773337_48773359	0.0193321	SOX3_SOX2	ENST00000595607.1|ZNF114|ENSG00000178150.4|zinc finger protein 114
hg19_v2_chr8_-_101965104_101965119	0.0192614	SOX3_SOX2	ENST00000437293.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr3_-_69101413_69101457	0.0192601	SOX3_SOX2	ENST00000398559.2|TMF1|ENSG00000144747.10|TATA element modulatory factor 1
hg19_v2_chr5_+_135364584_135364691	0.0192411	SOX3_SOX2	ENST00000442011.2|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa 	ENST00000305126.8|TGFBI|ENSG00000120708.12|transforming growth factor, beta-induced, 68kDa
hg19_v2_chr17_+_37618257_37618293	0.0192378	SOX3_SOX2	ENST00000447079.4|CDK12|ENSG00000167258.9|cyclin-dependent kinase 12
hg19_v2_chr2_-_180129484_180129574	0.0191355	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr14_+_101299520_101299615	0.0191108	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr20_-_60640866_60640901	0.019054	SOX3_SOX2	ENST00000252996.4|TAF4|ENSG00000130699.12|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
hg19_v2_chr12_+_64238539_64238600	0.0189738	SOX3_SOX2	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr3_-_87040233_87040257	0.0189578	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr4_+_15480828_15480868	0.0188552	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr18_+_18822216_18822319	0.0188455	SOX3_SOX2	ENST00000269218.6|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr9_-_34620440_34620515	0.0188304	SOX3_SOX2	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr19_-_8373173_8373263	0.0187872	SOX3_SOX2	ENST00000537716.2|CD320|ENSG00000167775.6|CD320 molecule 	ENST00000301458.5|CD320|ENSG00000167775.6|CD320 molecule
hg19_v2_chr4_+_41614720_41614734	0.0187218	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr16_+_4606347_4606491	0.0187152	SOX3_SOX2	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chr8_+_104427581_104427677	0.0186894	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr9_+_112403059_112403079	0.0186824	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr5_-_150284532_150284549	0.0186431	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr17_-_73150629_73150778	0.0185415	SOX3_SOX2	ENST00000356033.4|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000405458.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000409753.3|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr12_-_103889731_103889754	0.018534	SOX3_SOX2	ENST00000552578.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548048.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000315192.8|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000548883.1|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42 	ENST00000378113.2|C12orf42|ENSG00000179088.10|chromosome 12 open reading frame 42
hg19_v2_chrX_-_106959631_106959775	0.0184349	SOX3_SOX2	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr11_-_9286921_9286937	0.0184331	SOX3_SOX2	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr3_-_183735731_183735803	0.0183854	SOX3_SOX2	ENST00000334444.6|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr4_-_74088800_74088844	0.018333	SOX3_SOX2	ENST00000509867.2|ANKRD17|ENSG00000132466.13|ankyrin repeat domain 17
hg19_v2_chr8_+_79428539_79428606	0.0183289	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr15_-_52263937_52264003	0.0183257	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr1_+_36621174_36621191	0.0182749	SOX3_SOX2	ENST00000429533.2|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr21_-_40720995_40721126	0.0182594	SOX3_SOX2	ENST00000380749.5|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr1_-_151162606_151162689	0.0182452	SOX3_SOX2	ENST00000354473.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae) 	ENST00000368892.4|VPS72|ENSG00000163159.7|vacuolar protein sorting 72 homolog (S. cerevisiae)
hg19_v2_chr15_+_79166065_79166163	0.0181739	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr14_+_32798547_32798606	0.0181734	SOX3_SOX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr15_+_41136369_41136420	0.0181332	SOX3_SOX2	ENST00000563656.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr14_+_72052983_72053003	0.0180364	SOX3_SOX2	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr14_+_85996507_85996572	0.0179795	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr19_+_19779619_19779670	0.0179219	SOX3_SOX2	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr9_-_116061476_116061476	0.0179134	SOX3_SOX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr15_+_38544476_38544574	0.0178902	SOX3_SOX2	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr12_-_49504449_49504504	0.0178764	SOX3_SOX2	ENST00000547675.1|LMBR1L|ENSG00000139636.11|limb development membrane protein 1-like
hg19_v2_chr20_+_42086525_42086568	0.0178622	SOX3_SOX2	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr4_-_141677267_141677291	0.0178347	SOX3_SOX2	ENST00000442267.2|TBC1D9|ENSG00000109436.7|TBC1 domain family, member 9 (with GRAM domain)
hg19_v2_chr9_+_82187630_82187722	0.0177897	SOX3_SOX2	ENST00000265284.6|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr20_-_45985172_45985240	0.0177383	SOX3_SOX2	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr21_+_43934633_43934657	0.0177116	SOX3_SOX2	ENST00000398343.2|SLC37A1|ENSG00000160190.9|solute carrier family 37 (glucose-6-phosphate transporter), member 1
hg19_v2_chr1_-_177133998_177134018	0.0176559	SOX3_SOX2	ENST00000367657.3|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chrX_+_114827851_114827872	0.0176416	SOX3_SOX2	ENST00000539310.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr2_+_74710194_74710217	0.0176338	SOX3_SOX2	ENST00000410003.1|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000442235.2|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31 	ENST00000233623.5|TTC31|ENSG00000115282.15|tetratricopeptide repeat domain 31
hg19_v2_chr7_-_7575477_7575491	0.0176281	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chr6_-_116447283_116447325	0.017613	SOX3_SOX2	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr21_-_32931290_32931341	0.0175989	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr5_-_38595498_38595514	0.0175341	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr22_+_42372931_42372947	0.0175301	SOX3_SOX2	ENST00000328414.8|SEPT3|ENSG00000100167.15|septin 3 	ENST00000396425.3|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr2_+_120517174_120517207	0.017523	SOX3_SOX2	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr17_+_75316336_75316406	0.0174729	SOX3_SOX2	ENST00000591934.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chrX_+_51928002_51928017	0.0174183	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chrX_+_114827818_114827842	0.0173961	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr2_+_74648848_74648894	0.0173449	SOX3_SOX2	ENST00000409791.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000426787.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000348227.4|WDR54|ENSG00000005448.12|WD repeat domain 54
hg19_v2_chr3_-_93747425_93747454	0.0173393	SOX3_SOX2	ENST00000315099.2|STX19|ENSG00000178750.2|syntaxin 19
hg19_v2_chr7_-_32931387_32931509	0.0173387	SOX3_SOX2	ENST00000304056.4|KBTBD2|ENSG00000170852.6|kelch repeat and BTB (POZ) domain containing 2
hg19_v2_chr4_+_126315091_126315091	0.0173096	SOX3_SOX2	ENST00000335110.5|FAT4|ENSG00000196159.7|FAT atypical cadherin 4
hg19_v2_chr1_+_87794150_87794172	0.0173001	SOX3_SOX2	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr1_+_82165350_82165455	0.0172806	SOX3_SOX2	ENST00000359929.3|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr14_-_68159152_68159200	0.0172728	SOX3_SOX2	ENST00000554035.1|RDH11|ENSG00000072042.8|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
hg19_v2_chr14_+_93799556_93799577	0.0172329	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chrX_+_37545012_37545064	0.0172008	SOX3_SOX2	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr2_-_151344172_151344243	0.0171818	SOX3_SOX2	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr5_-_16742330_16742344	0.0171608	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr1_-_115300592_115300648	0.0171184	SOX3_SOX2	ENST00000261443.5|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000534699.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000339438.6|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000529046.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000525970.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000369530.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding 	ENST00000530886.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr19_-_35323762_35323779	0.017076	SOX3_SOX2	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr1_-_20755140_20755275	0.0170703	SOX3_SOX2	ENST00000418743.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141 	ENST00000426428.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141
hg19_v2_chr6_-_31619892_31619964	0.0170178	SOX3_SOX2	ENST00000454165.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000428326.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000452994.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr4_-_90756769_90756846	0.0170131	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr19_-_55690758_55690780	0.0169964	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr4_-_140477928_140477990	0.0169767	SOX3_SOX2	ENST00000274031.3|SETD7|ENSG00000145391.9|SET domain containing (lysine methyltransferase) 7
hg19_v2_chr2_-_127963343_127963343	0.0169357	SOX3_SOX2	ENST00000335247.7|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr16_+_1359511_1359804	0.0168362	SOX3_SOX2	ENST00000397514.3|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000397515.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000567383.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000403747.2|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I 	ENST00000566587.1|UBE2I|ENSG00000103275.14|ubiquitin-conjugating enzyme E2I
hg19_v2_chr6_-_31508304_31508360	0.01682	SOX3_SOX2	ENST00000376177.2|DDX39B|ENSG00000198563.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
hg19_v2_chr7_+_73868439_73868450	0.0167839	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr5_-_90610200_90610226	0.016717	SOX3_SOX2	ENST00000511918.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000513626.1|LUCAT1|ENSG00000248323.1|lung cancer associated transcript 1 (non-protein coding) 	ENST00000607854.1|RP11-213H15.4|ENSG00000271762.1|RP11-213H15.4
hg19_v2_chr22_+_42372764_42372868	0.0166701	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr3_+_193310969_193311053	0.0166565	SOX3_SOX2	ENST00000392437.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr17_+_68100989_68101026	0.0165385	SOX3_SOX2	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr11_-_9286627_9286657	0.0165356	SOX3_SOX2	ENST00000530044.1|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr16_-_28550348_28550495	0.0164436	SOX3_SOX2	ENST00000324873.6|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr4_+_83351715_83351786	0.0164377	SOX3_SOX2	ENST00000273920.3|ENOPH1|ENSG00000145293.10|enolase-phosphatase 1
hg19_v2_chr9_+_80912059_80912081	0.016287	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr8_-_6420565_6420659	0.0161996	SOX3_SOX2	ENST00000338312.6|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr11_+_7273181_7273223	0.0161638	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr8_-_6420777_6420784	0.0161576	SOX3_SOX2	ENST00000415216.1|ANGPT2|ENSG00000091879.9|angiopoietin 2
hg19_v2_chr3_-_93781750_93781831	0.0161125	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr10_-_61900762_61900779	0.0160776	SOX3_SOX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_+_27237615_27237667	0.0160497	SOX3_SOX2	ENST00000458529.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3 	ENST00000402218.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3
hg19_v2_chr6_-_112194484_112194662	0.0159037	SOX3_SOX2	ENST00000518295.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000484067.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000229470.5|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000356013.2|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000368678.4|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000523238.1|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES 	ENST00000354650.3|FYN|ENSG00000010810.13|FYN oncogene related to SRC, FGR, YES
hg19_v2_chrX_+_135252050_135252085	0.0158781	SOX3_SOX2	ENST00000449474.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1 	ENST00000345434.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr2_+_166428839_166428859	0.0158675	SOX3_SOX2	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr17_-_30668887_30668971	0.0158545	SOX3_SOX2	ENST00000581747.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000583334.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000580558.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr2_+_105050794_105050854	0.0158444	SOX3_SOX2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr16_-_30546141_30546240	0.0157748	SOX3_SOX2	ENST00000535210.1|ZNF747|ENSG00000169955.6|zinc finger protein 747 	ENST00000395094.3|ZNF747|ENSG00000169955.6|zinc finger protein 747
hg19_v2_chr15_-_73076030_73076126	0.0157373	SOX3_SOX2	ENST00000311669.8|ADPGK|ENSG00000159322.13|ADP-dependent glucokinase
hg19_v2_chr3_+_185304059_185304124	0.0156956	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr5_+_72112470_72112533	0.0156917	SOX3_SOX2	ENST00000447967.2|TNPO1|ENSG00000083312.13|transportin 1 	ENST00000523768.1|TNPO1|ENSG00000083312.13|transportin 1
hg19_v2_chr5_-_98262240_98262240	0.0156713	SOX3_SOX2	ENST00000284049.3|CHD1|ENSG00000153922.6|chromodomain helicase DNA binding protein 1
hg19_v2_chr20_+_58713514_58713554	0.0156263	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chrX_-_128657457_128657477	0.015529	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr14_+_52456193_52456320	0.0155274	SOX3_SOX2	ENST00000261700.3|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr1_-_154155675_154155709	0.0155133	SOX3_SOX2	ENST00000330188.9|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000341485.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr19_-_46476791_46476819	0.0155089	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr17_-_7145475_7145774	0.0154965	SOX3_SOX2	ENST00000571129.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000571253.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein 	ENST00000573928.1|GABARAP|ENSG00000170296.5|GABA(A) receptor-associated protein
hg19_v2_chr7_+_99613195_99613206	0.0154778	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr4_-_125633876_125633897	0.0153952	SOX3_SOX2	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr2_-_224810070_224810104	0.0153528	SOX3_SOX2	ENST00000429915.1|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1 	ENST00000233055.4|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1
hg19_v2_chr10_+_70320413_70320413	0.0153404	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr2_+_162272605_162272753	0.0153346	SOX3_SOX2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr1_-_9970383_9970421	0.0153289	SOX3_SOX2	ENST00000400904.3|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr1_+_66999268_66999313	0.0153155	SOX3_SOX2	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr14_-_21493123_21493448	0.0153153	SOX3_SOX2	ENST00000556147.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554489.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555657.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557274.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555158.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554833.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555384.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556420.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554893.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553503.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555733.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553867.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397856.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397855.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556008.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557182.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554483.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556688.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397853.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556329.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554143.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397851.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555142.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557676.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556924.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr1_+_167298281_167298319	0.0152708	SOX3_SOX2	ENST00000367862.5|POU2F1|ENSG00000143190.17|POU class 2 homeobox 1
hg19_v2_chr19_-_39264072_39264132	0.0152669	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr13_-_36920420_36920574	0.0151731	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr19_-_20844343_20844351	0.0151209	SOX3_SOX2	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr2_+_169923504_169923545	0.0150987	SOX3_SOX2	ENST00000357546.2|DHRS9|ENSG00000073737.12|dehydrogenase/reductase (SDR family) member 9
hg19_v2_chr12_+_16500037_16500076	0.0150734	SOX3_SOX2	ENST00000536371.1|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1 	ENST00000010404.2|MGST1|ENSG00000008394.8|microsomal glutathione S-transferase 1
hg19_v2_chr11_+_44117741_44117798	0.0150622	SOX3_SOX2	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chrX_-_19817869_19817922	0.0149764	SOX3_SOX2	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr1_-_156217829_156217867	0.0149687	SOX3_SOX2	ENST00000356983.2|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000335852.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000340183.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000540423.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr18_+_29027696_29027774	0.0149613	SOX3_SOX2	ENST00000257189.4|DSG3|ENSG00000134757.4|desmoglein 3
hg19_v2_chr4_-_157892498_157892546	0.0148503	SOX3_SOX2	ENST00000502773.1|PDGFC|ENSG00000145431.6|platelet derived growth factor C
hg19_v2_chr9_+_140032842_140032842	0.0147148	SOX3_SOX2	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr2_+_106361333_106361520	0.0147062	SOX3_SOX2	ENST00000233154.4|NCK2|ENSG00000071051.9|NCK adaptor protein 2 	ENST00000451463.2|NCK2|ENSG00000071051.9|NCK adaptor protein 2
hg19_v2_chr3_-_120170052_120170100	0.0146899	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr2_+_54684327_54684399	0.0146847	SOX3_SOX2	ENST00000389980.3|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr9_-_92051354_92051386	0.0145338	SOX3_SOX2	ENST00000418828.1|SEMA4D|ENSG00000187764.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
hg19_v2_chr6_-_2972075_2972090	0.0144792	SOX3_SOX2	ENST00000335686.5|SERPINB6|ENSG00000124570.13|serpin peptidase inhibitor, clade B (ovalbumin), member 6
hg19_v2_chr15_-_74659978_74660081	0.0140583	SOX3_SOX2	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr2_+_179316163_179316163	0.0140462	SOX3_SOX2	ENST00000409117.3|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr13_-_49975632_49975735	0.0140181	SOX3_SOX2	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr3_+_193310918_193310934	0.0139918	SOX3_SOX2	ENST00000361908.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000392438.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361510.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361715.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361828.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361150.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr12_-_49581152_49581241	0.0139005	SOX3_SOX2	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr17_-_56406117_56406165	0.0138861	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr18_+_11751493_11751507	0.0137347	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr16_-_25026641_25026698	0.0135933	SOX3_SOX2	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr8_+_42196000_42196021	0.0135763	SOX3_SOX2	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr9_-_74525658_74525658	0.0135422	SOX3_SOX2	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr1_-_6479963_6479986	0.0135345	SOX3_SOX2	ENST00000377836.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000487437.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000489730.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000377834.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2
hg19_v2_chr16_+_28722684_28722807	0.0135064	SOX3_SOX2	ENST00000331666.6|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000395587.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000569690.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C 	ENST00000564243.1|EIF3C|ENSG00000184110.10|eukaryotic translation initiation factor 3, subunit C
hg19_v2_chr11_-_18548426_18548500	0.0134836	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr8_-_101964832_101964852	0.0133913	SOX3_SOX2	ENST00000523131.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 	ENST00000418997.1|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr19_-_20150014_20150085	0.0133911	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr19_-_55691614_55691809	0.0133129	SOX3_SOX2	ENST00000592470.1|SYT5|ENSG00000129990.10|synaptotagmin V 	ENST00000354308.3|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr14_-_63974941_63974962	0.0132896	SOX3_SOX2	ENST00000422769.2|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chr11_+_125496400_125496464	0.0131951	SOX3_SOX2	ENST00000524737.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr5_+_137514834_137514910	0.0131658	SOX3_SOX2	ENST00000508792.1|KIF20A|ENSG00000112984.7|kinesin family member 20A 	ENST00000504621.1|KIF20A|ENSG00000112984.7|kinesin family member 20A
hg19_v2_chr22_-_38713428_38713446	0.0131597	SOX3_SOX2	ENST00000403904.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000405675.3|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr12_+_49297887_49297898	0.013067	SOX3_SOX2	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr16_-_66519747_66519747	0.0130341	SOX3_SOX2	ENST00000544589.1|AC132186.1|ENSG00000247270.2|CDNA FLJ27243 fis, clone SYN08134; Uncharacterized protein
hg19_v2_chr17_+_16284749_16284779	0.0130061	SOX3_SOX2	ENST00000578706.1|UBB|ENSG00000170315.9|ubiquitin B
hg19_v2_chr8_-_27468717_27468788	0.0130025	SOX3_SOX2	ENST00000520796.1|CLU|ENSG00000120885.15|clusterin 	ENST00000520491.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr6_+_108881012_108881038	0.012913	SOX3_SOX2	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr17_+_57297807_57297923	0.0129041	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr7_+_73868220_73868300	0.0129017	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr1_-_11024258_11024258	0.0128961	SOX3_SOX2	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr1_-_79472365_79472443	0.0127917	SOX3_SOX2	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr12_-_95945246_95945270	0.0127353	SOX3_SOX2	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr14_-_58618896_58618939	0.0127239	SOX3_SOX2	ENST00000267485.7|C14orf37|ENSG00000139971.11|chromosome 14 open reading frame 37
hg19_v2_chr10_-_62149433_62149488	0.0126583	SOX3_SOX2	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr6_+_30689350_30689366	0.0126164	SOX3_SOX2	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr4_+_89444961_89445032	0.0125381	SOX3_SOX2	ENST00000513325.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3
hg19_v2_chr5_+_121465234_121465263	0.0125107	SOX3_SOX2	ENST00000504912.1|ZNF474|ENSG00000164185.4|zinc finger protein 474 	ENST00000505843.1|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr7_-_29234802_29234895	0.0125062	SOX3_SOX2	ENST00000449801.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like 	ENST00000409850.1|CPVL|ENSG00000106066.9|carboxypeptidase, vitellogenic-like
hg19_v2_chr15_+_64388166_64388225	0.0124841	SOX3_SOX2	ENST00000353874.4|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000261889.5|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000559844.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000561026.1|SNX1|ENSG00000028528.10|sorting nexin 1 	ENST00000558040.1|SNX1|ENSG00000028528.10|sorting nexin 1
hg19_v2_chr4_+_156680143_156680152	0.0123875	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr11_+_20044600_20044636	0.0123613	SOX3_SOX2	ENST00000311043.8|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr14_-_25519095_25519280	0.0122855	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr2_+_172949468_172949522	0.0122812	SOX3_SOX2	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr14_-_88459182_88459236	0.0122768	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr16_+_24741013_24741058	0.012144	SOX3_SOX2	ENST00000315183.7|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A 	ENST00000395799.3|TNRC6A|ENSG00000090905.13|trinucleotide repeat containing 6A
hg19_v2_chr11_-_94227029_94227074	0.0121251	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr3_-_33700933_33701085	0.012118	SOX3_SOX2	ENST00000480013.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr9_+_15422702_15422883	0.0118506	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr1_+_90460661_90460745	0.0117332	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr11_-_71810258_71810304	0.0116941	SOX3_SOX2	ENST00000544594.1|LAMTOR1|ENSG00000149357.5|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
hg19_v2_chr1_-_161168834_161168851	0.0116896	SOX3_SOX2	ENST00000367995.3|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4 	ENST00000367996.5|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4
hg19_v2_chr17_-_73127826_73127890	0.0116849	SOX3_SOX2	ENST00000582170.1|NT5C|ENSG00000125458.2|5', 3'-nucleotidase, cytosolic 	ENST00000245552.2|NT5C|ENSG00000125458.2|5', 3'-nucleotidase, cytosolic
hg19_v2_chr1_-_26231589_26231635	0.011599	SOX3_SOX2	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr3_+_23851928_23851951	0.0114698	SOX3_SOX2	ENST00000467766.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1 	ENST00000424381.1|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr14_-_103434869_103435038	0.0114683	SOX3_SOX2	ENST00000559043.1|CDC42BPB|ENSG00000198752.5|CDC42 binding protein kinase beta (DMPK-like)
hg19_v2_chr14_-_23446900_23446946	0.0114553	SOX3_SOX2	ENST00000556731.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr4_+_71768043_71768095	0.0114328	SOX3_SOX2	ENST00000502869.1|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000309395.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B 	ENST00000396051.2|MOB1B|ENSG00000173542.4|MOB kinase activator 1B
hg19_v2_chr2_-_74781061_74781088	0.0114055	SOX3_SOX2	ENST00000264094.3|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000393937.2|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3 	ENST00000409986.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr12_-_6715808_6715875	0.0113819	SOX3_SOX2	ENST00000545584.1|CHD4|ENSG00000111642.10|chromodomain helicase DNA binding protein 4
hg19_v2_chr7_+_87257854_87257931	0.0113741	SOX3_SOX2	ENST00000394654.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr15_-_88799948_88799978	0.0113402	SOX3_SOX2	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr10_-_113943447_113943536	0.0113274	SOX3_SOX2	ENST00000369425.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000348367.4|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial 	ENST00000423155.1|GPAM|ENSG00000119927.9|glycerol-3-phosphate acyltransferase, mitochondrial
hg19_v2_chr6_-_86352642_86352709	0.011327	SOX3_SOX2	ENST00000355238.6|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr1_+_213123976_213124009	0.0111793	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr16_+_27078219_27078229	0.0111142	SOX3_SOX2	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr22_-_38713394_38713416	0.0110831	SOX3_SOX2	ENST00000396832.1|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon 	ENST00000413574.2|CSNK1E|ENSG00000213923.6|casein kinase 1, epsilon
hg19_v2_chr8_+_12803176_12803195	0.0110495	SOX3_SOX2	ENST00000524591.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr2_-_207024233_207024327	0.0110472	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr19_+_12949251_12949370	0.010919	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr1_+_1266654_1266694	0.0108641	SOX3_SOX2	ENST00000339381.5|TAS1R3|ENSG00000169962.4|taste receptor, type 1, member 3
hg19_v2_chr12_+_49621658_49621709	0.0108413	SOX3_SOX2	ENST00000541364.1|TUBA1C|ENSG00000167553.10|tubulin, alpha 1c
hg19_v2_chr19_+_3224700_3224759	0.0107887	SOX3_SOX2	ENST00000292672.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5 	ENST00000541430.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5
hg19_v2_chr1_-_3447967_3448012	0.0107751	SOX3_SOX2	ENST00000294599.4|MEGF6|ENSG00000162591.11|multiple EGF-like-domains 6
hg19_v2_chr14_-_69619823_69619879	0.0107697	SOX3_SOX2	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr18_+_7946941_7946952	0.0107262	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr10_+_82298088_82298088	0.0107249	SOX3_SOX2	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr3_+_160473996_160474033	0.0107247	SOX3_SOX2	ENST00000498165.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr6_+_131958436_131958525	0.0107134	SOX3_SOX2	ENST00000357639.3|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000543135.1|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000427148.2|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000358229.5|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3
hg19_v2_chr4_+_128554081_128554121	0.0107021	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr13_-_30881621_30881675	0.0106885	SOX3_SOX2	ENST00000380615.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr17_+_8339189_8339285	0.0106698	SOX3_SOX2	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr16_-_75529273_75529293	0.0106559	SOX3_SOX2	ENST00000390664.2|CHST6|ENSG00000183196.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
hg19_v2_chr19_-_56904799_56904919	0.0105561	SOX3_SOX2	ENST00000589895.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000589143.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000301310.4|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000586929.1|ZNF582|ENSG00000018869.12|zinc finger protein 582
hg19_v2_chr5_+_102201509_102201528	0.0104971	SOX3_SOX2	ENST00000348126.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000379787.4|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr8_-_27469196_27469294	0.0104735	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr3_+_160473343_160473400	0.0104601	SOX3_SOX2	ENST00000497343.1|PPM1L|ENSG00000163590.9|protein phosphatase, Mg2+/Mn2+ dependent, 1L
hg19_v2_chr17_+_7477040_7477257	0.0103121	SOX3_SOX2	ENST00000581384.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1 	ENST00000577929.1|EIF4A1|ENSG00000161960.10|eukaryotic translation initiation factor 4A1
hg19_v2_chr10_-_13390021_13390040	0.0102746	SOX3_SOX2	ENST00000537130.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr12_-_22063787_22063912	0.0101606	SOX3_SOX2	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr12_-_100378006_100378049	0.0101201	SOX3_SOX2	ENST00000547776.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000329257.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000547010.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr16_+_28985542_28985642	0.0100882	SOX3_SOX2	ENST00000567771.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila) 	ENST00000568388.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila)
hg19_v2_chr2_+_228736321_228736332	0.0100543	SOX3_SOX2	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr17_-_48207157_48207246	0.00999282	SOX3_SOX2	ENST00000330175.4|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14 	ENST00000503131.1|SAMD14|ENSG00000167100.10|sterile alpha motif domain containing 14
hg19_v2_chr12_-_122712038_122712081	0.0099631	SOX3_SOX2	ENST00000413918.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein 	ENST00000443649.3|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr12_+_58937907_58937907	0.00987076	SOX3_SOX2	ENST00000546977.1|RP11-362K2.2|ENSG00000258231.1|Protein LOC100506869
hg19_v2_chr22_+_25595817_25595840	0.0098614	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr19_-_52150053_52150151	0.00984588	SOX3_SOX2	ENST00000599649.1|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000360844.6|SIGLEC14|ENSG00000254415.3|sialic acid binding Ig-like lectin 14 	ENST00000429354.3|SIGLEC5|ENSG00000268500.1|SIGLEC5	ENST00000222107.4|SIGLEC5|ENSG00000105501.7|sialic acid binding Ig-like lectin 5
hg19_v2_chr15_-_35088340_35088340	0.0098431	SOX3_SOX2	ENST00000290378.4|ACTC1|ENSG00000159251.6|actin, alpha, cardiac muscle 1
hg19_v2_chr9_+_96338860_96338939	0.0097853	SOX3_SOX2	ENST00000375376.4|PHF2|ENSG00000197724.6|PHD finger protein 2
hg19_v2_chr7_-_137028534_137028611	0.00978373	SOX3_SOX2	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr12_+_19358228_19358259	0.00978124	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr16_+_28303804_28303864	0.00975447	SOX3_SOX2	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chrX_-_73072534_73072588	0.00973095	SOX3_SOX2	ENST00000429829.1|XIST|ENSG00000229807.5|X inactive specific transcript (non-protein coding)
hg19_v2_chr8_+_82644669_82644738	0.00965942	SOX3_SOX2	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr22_-_46450024_46450110	0.00955098	SOX3_SOX2	ENST00000396008.2|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26 	ENST00000333761.1|C22orf26|ENSG00000182257.5|chromosome 22 open reading frame 26
hg19_v2_chr4_+_150999418_150999433	0.00953236	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr5_-_33892204_33892297	0.00953157	SOX3_SOX2	ENST00000504830.1|ADAMTS12|ENSG00000151388.6|ADAM metallopeptidase with thrombospondin type 1 motif, 12
hg19_v2_chr19_+_15052301_15052301	0.00947558	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chr14_-_100772767_100772790	0.00938968	SOX3_SOX2	ENST00000392908.3|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 	ENST00000539621.1|SLC25A29|ENSG00000197119.8|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
hg19_v2_chr20_+_47835884_47835920	0.00931321	SOX3_SOX2	ENST00000371764.4|DDX27|ENSG00000124228.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
hg19_v2_chr10_-_18948208_18948219	0.00928344	SOX3_SOX2	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr3_-_12587055_12587055	0.00918511	SOX3_SOX2	ENST00000564146.3|C3orf83|ENSG00000225526.4|chromosome 3 open reading frame 83
hg19_v2_chr16_+_15068916_15068944	0.00910665	SOX3_SOX2	ENST00000455313.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr1_-_93645818_93645918	0.00901757	SOX3_SOX2	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr2_-_197791441_197791525	0.00898606	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr4_+_175204865_175204915	0.00890807	SOX3_SOX2	ENST00000505124.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr2_-_183387283_183387304	0.00888098	SOX3_SOX2	ENST00000435564.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr1_-_173020056_173020103	0.00887976	SOX3_SOX2	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr13_+_111855414_111855417	0.00872866	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr19_-_14785674_14785685	0.00866367	SOX3_SOX2	ENST00000253673.5|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chrX_+_135251783_135251813	0.00859979	SOX3_SOX2	ENST00000394153.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr18_-_7117813_7117843	0.00857445	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr17_+_79761997_79762034	0.00849883	SOX3_SOX2	ENST00000400723.3|GCGR|ENSG00000215644.5|glucagon receptor 	ENST00000570996.1|GCGR|ENSG00000215644.5|glucagon receptor
hg19_v2_chr15_-_40331115_40331251	0.00845033	SOX3_SOX2	ENST00000558720.1|SRP14|ENSG00000140319.6|signal recognition particle 14kDa (homologous Alu RNA binding protein)
hg19_v2_chr12_-_58145604_58145660	0.00844592	SOX3_SOX2	ENST00000552254.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4
hg19_v2_chr8_-_144674284_144674339	0.00844397	SOX3_SOX2	ENST00000528519.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr3_+_9958870_9959000	0.00828574	SOX3_SOX2	ENST00000413608.1|IL17RC|ENSG00000163702.14|interleukin 17 receptor C
hg19_v2_chr19_+_42041702_42041734	0.00816898	SOX3_SOX2	ENST00000487420.2|AC006129.4|ENSG00000270164.1|AC006129.4
hg19_v2_chr15_+_41136586_41136725	0.00813285	SOX3_SOX2	ENST00000431806.1|SPINT1|ENSG00000166145.10|serine peptidase inhibitor, Kunitz type 1
hg19_v2_chr5_+_121647924_121647940	0.00812714	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr17_-_18585541_18585572	0.00810774	SOX3_SOX2	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr3_+_177159744_177159791	0.00803245	SOX3_SOX2	ENST00000439009.1|LINC00578|ENSG00000228221.1|long intergenic non-protein coding RNA 578
hg19_v2_chrX_+_2924654_2924654	0.00800432	SOX3_SOX2	ENST00000381130.2|ARSH|ENSG00000205667.2|arylsulfatase family, member H
hg19_v2_chr17_-_62308087_62308116	0.00798767	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr17_-_73127778_73127821	0.00795246	SOX3_SOX2	ENST00000578407.1|NT5C|ENSG00000125458.2|5', 3'-nucleotidase, cytosolic
hg19_v2_chr10_+_11047259_11047351	0.00792765	SOX3_SOX2	ENST00000379261.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000416382.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr10_+_70939983_70940044	0.00787332	SOX3_SOX2	ENST00000359655.4|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae) 	ENST00000422378.1|SUPV3L1|ENSG00000156502.9|suppressor of var1, 3-like 1 (S. cerevisiae)
hg19_v2_chr19_+_47105309_47105329	0.00784142	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr1_-_95392635_95392834	0.00781708	SOX3_SOX2	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chrX_-_13835398_13835442	0.0077506	SOX3_SOX2	ENST00000475307.1|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr1_+_27113963_27114072	0.00771522	SOX3_SOX2	ENST00000430292.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr3_+_73045936_73046128	0.0076863	SOX3_SOX2	ENST00000356692.5|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000488810.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000394284.3|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000295862.9|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2 	ENST00000495566.1|PPP4R2|ENSG00000163605.10|protein phosphatase 4, regulatory subunit 2
hg19_v2_chr7_+_105603699_105603732	0.00762428	SOX3_SOX2	ENST00000478080.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr15_+_78730622_78730646	0.00758657	SOX3_SOX2	ENST00000560440.1|IREB2|ENSG00000136381.8|iron-responsive element binding protein 2
hg19_v2_chr11_-_61582579_61582763	0.00751858	SOX3_SOX2	ENST00000539419.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545245.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545405.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000542506.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1
hg19_v2_chr3_+_14860469_14860469	0.00750774	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr15_+_93447675_93447703	0.00738696	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr5_-_137514333_137514367	0.00730838	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr7_+_16700806_16700897	0.00726732	SOX3_SOX2	ENST00000446596.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000438834.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2
hg19_v2_chr7_+_7196565_7196714	0.00722518	SOX3_SOX2	ENST00000429911.1|C1GALT1|ENSG00000106392.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
hg19_v2_chr1_+_32739733_32739746	0.00722069	SOX3_SOX2	ENST00000333070.4|LCK|ENSG00000182866.12|lymphocyte-specific protein tyrosine kinase
hg19_v2_chr1_-_51796987_51797018	0.00720925	SOX3_SOX2	ENST00000262676.5|TTC39A|ENSG00000085831.11|tetratricopeptide repeat domain 39A
hg19_v2_chr19_+_36132631_36132695	0.0072071	SOX3_SOX2	ENST00000379026.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000379023.4|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000402764.2|ETV2|ENSG00000105672.10|ets variant 2 	ENST00000479824.1|ETV2|ENSG00000105672.10|ets variant 2
hg19_v2_chr4_-_90757364_90757396	0.00717766	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr8_+_124194752_124194835	0.00716451	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr12_-_13248705_13248710	0.00713873	SOX3_SOX2	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr2_+_208576355_208576475	0.00713392	SOX3_SOX2	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr14_+_39644425_39644470	0.00708059	SOX3_SOX2	ENST00000556530.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr8_-_29939933_29939949	0.00703204	SOX3_SOX2	ENST00000522794.1|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr8_-_38386175_38386180	0.00702982	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr13_-_99667960_99668068	0.00702776	SOX3_SOX2	ENST00000448493.2|DOCK9|ENSG00000088387.13|dedicator of cytokinesis 9
hg19_v2_chr19_-_14785622_14785667	0.00697843	SOX3_SOX2	ENST00000443157.2|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr19_+_1105110_1105259	0.00689466	SOX3_SOX2	ENST00000587648.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chrX_-_128977781_128977869	0.00681044	SOX3_SOX2	ENST00000357166.6|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr14_-_25519317_25519503	0.00680912	SOX3_SOX2	ENST00000323944.5|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr14_-_69619291_69619326	0.00680825	SOX3_SOX2	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr12_-_13248732_13248744	0.00670774	SOX3_SOX2	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chrX_-_135962923_135962943	0.00666612	SOX3_SOX2	ENST00000565438.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr20_-_48184638_48184694	0.00662296	SOX3_SOX2	ENST00000244043.4|PTGIS|ENSG00000124212.5|prostaglandin I2 (prostacyclin) synthase
hg19_v2_chr11_-_62369291_62369351	0.00657578	SOX3_SOX2	ENST00000278823.2|MTA2|ENSG00000149480.2|metastasis associated 1 family, member 2
hg19_v2_chr12_-_45307711_45307922	0.00654221	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr20_-_30458019_30458083	0.00652024	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr8_-_18541603_18541650	0.00650636	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_+_101419187_101419313	0.00645144	SOX3_SOX2	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr17_-_27278304_27278408	0.0063152	SOX3_SOX2	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr1_-_169555709_169555730	0.00629635	SOX3_SOX2	ENST00000546081.1|F5|ENSG00000198734.6|coagulation factor V (proaccelerin, labile factor)
hg19_v2_chrX_-_17878827_17878846	0.00624595	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr2_+_202098203_202098256	0.00621286	SOX3_SOX2	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr9_+_71819927_71820053	0.00617574	SOX3_SOX2	ENST00000535702.1|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr1_-_110155671_110155685	0.00612959	SOX3_SOX2	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr4_+_41540160_41540196	0.00612584	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr13_-_28545276_28545276	0.00602845	SOX3_SOX2	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr20_-_44718538_44718612	0.00597123	SOX3_SOX2	ENST00000290231.6|NCOA5|ENSG00000124160.7|nuclear receptor coactivator 5 	ENST00000372291.3|NCOA5|ENSG00000124160.7|nuclear receptor coactivator 5
hg19_v2_chr7_+_86273952_86274090	0.0059198	SOX3_SOX2	ENST00000536043.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr14_-_23904861_23904927	0.00591663	SOX3_SOX2	ENST00000355349.3|MYH7|ENSG00000092054.12|myosin, heavy chain 7, cardiac muscle, beta
hg19_v2_chr11_+_19799327_19799472	0.00585505	SOX3_SOX2	ENST00000540292.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr11_+_369804_369804	0.00585405	SOX3_SOX2	ENST00000329962.6|B4GALNT4|ENSG00000182272.7|beta-1,4-N-acetyl-galactosaminyl transferase 4
hg19_v2_chr22_+_42372970_42372994	0.0058116	SOX3_SOX2	ENST00000291236.11|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr6_-_42981651_42981706	0.00576896	SOX3_SOX2	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr6_+_44355257_44355315	0.00575049	SOX3_SOX2	ENST00000371477.3|CDC5L|ENSG00000096401.7|cell division cycle 5-like
hg19_v2_chr9_+_136325149_136325171	0.00573435	SOX3_SOX2	ENST00000542192.1|CACFD1|ENSG00000160325.10|calcium channel flower domain containing 1
hg19_v2_chr6_+_30687978_30688141	0.00572277	SOX3_SOX2	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr20_-_34252847_34252878	0.00567794	SOX3_SOX2	ENST00000317619.3|CPNE1|ENSG00000214078.7|copine I 	ENST00000397446.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397445.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000397443.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000430570.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000439806.2|CPNE1|ENSG00000214078.7|copine I 	ENST00000435161.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12 	ENST00000437340.1|CPNE1|ENSG00000214078.7|copine I 	ENST00000431148.1|RBM12|ENSG00000244462.3|RNA binding motif protein 12
hg19_v2_chr4_-_174256276_174256303	0.00555776	SOX3_SOX2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr19_+_10765003_10765058	0.00548663	SOX3_SOX2	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr1_-_151431647_151431669	0.00545039	SOX3_SOX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr19_+_52839515_52839572	0.00535384	SOX3_SOX2	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr1_+_109256067_109256067	0.00524027	SOX3_SOX2	ENST00000271311.2|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr15_-_50647274_50647336	0.00522801	SOX3_SOX2	ENST00000543881.1|GABPB1|ENSG00000104064.12|GA binding protein transcription factor, beta subunit 1
hg19_v2_chr3_-_141747459_141747507	0.00517539	SOX3_SOX2	ENST00000477292.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000478006.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000495310.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000486111.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr7_-_140178726_140178774	0.00506155	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr2_-_128568721_128568766	0.00503715	SOX3_SOX2	ENST00000322313.4|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000393006.1|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000409658.3|WDR33|ENSG00000136709.7|WD repeat domain 33 	ENST00000436787.1|WDR33|ENSG00000136709.7|WD repeat domain 33
hg19_v2_chr17_-_76713100_76713122	0.00502096	SOX3_SOX2	ENST00000585509.1|CYTH1|ENSG00000108669.12|cytohesin 1
hg19_v2_chr2_-_74648702_74648782	0.00494744	SOX3_SOX2	ENST00000518863.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr20_+_49126881_49126936	0.00488302	SOX3_SOX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr6_-_91006627_91006641	0.00486987	SOX3_SOX2	ENST00000537989.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr6_-_31620095_31620135	0.00480157	SOX3_SOX2	ENST00000424176.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456622.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr12_+_49212261_49212319	0.00479466	SOX3_SOX2	ENST00000547818.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547392.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr15_-_72564906_72564931	0.00476405	SOX3_SOX2	ENST00000566844.1|PARP6|ENSG00000137817.12|poly (ADP-ribose) polymerase family, member 6
hg19_v2_chr15_-_88799661_88799755	0.00472837	SOX3_SOX2	ENST00000360948.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000357724.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000355254.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000317501.3|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr20_+_34556488_34556545	0.00471021	SOX3_SOX2	ENST00000373973.3|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000349339.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000538900.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2
hg19_v2_chr22_-_17640110_17640185	0.0044713	SOX3_SOX2	ENST00000399852.3|CECR5|ENSG00000069998.8|cat eye syndrome chromosome region, candidate 5 	ENST00000336737.4|CECR5|ENSG00000069998.8|cat eye syndrome chromosome region, candidate 5
hg19_v2_chr11_-_62689046_62689279	0.00446146	SOX3_SOX2	ENST00000306960.3|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1 	ENST00000543973.1|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1
hg19_v2_chr17_-_9939935_9939990	0.00436356	SOX3_SOX2	ENST00000580043.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr14_-_24553834_24553850	0.004354	SOX3_SOX2	ENST00000397002.2|NRL|ENSG00000129535.8|neural retina leucine zipper
hg19_v2_chr14_+_96505659_96505664	0.00430906	SOX3_SOX2	ENST00000555004.1|C14orf132|ENSG00000227051.4|chromosome 14 open reading frame 132
hg19_v2_chr12_-_122907091_122907186	0.00423808	SOX3_SOX2	ENST00000358808.2|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000361654.4|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000539080.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1 	ENST00000537178.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr8_-_66546373_66546428	0.00418602	SOX3_SOX2	ENST00000518908.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000458464.2|ARMC1|ENSG00000104442.5|armadillo repeat containing 1 	ENST00000519352.1|ARMC1|ENSG00000104442.5|armadillo repeat containing 1
hg19_v2_chr12_-_120907459_120907596	0.004147	SOX3_SOX2	ENST00000229390.3|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr11_-_105948040_105948082	0.00401999	SOX3_SOX2	ENST00000534815.1|KBTBD3|ENSG00000182359.10|kelch repeat and BTB (POZ) domain containing 3
hg19_v2_chr6_-_167040731_167040745	0.00392441	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr3_+_123813543_123813587	0.0038942	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr1_-_117210290_117210376	0.00389287	SOX3_SOX2	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr3_-_52719912_52719995	0.00386686	SOX3_SOX2	ENST00000420148.1|PBRM1|ENSG00000163939.14|polybromo 1
hg19_v2_chr9_+_90112741_90112761	0.00386575	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chrX_-_110654147_110654194	0.00379591	SOX3_SOX2	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr1_-_209975494_209975511	0.00375321	SOX3_SOX2	ENST00000456314.1|IRF6|ENSG00000117595.6|interferon regulatory factor 6
hg19_v2_chrX_+_135251835_135251887	0.00373179	SOX3_SOX2	ENST00000456445.1|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr11_+_66045634_66045710	0.00369591	SOX3_SOX2	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr19_-_12992244_12992272	0.0036737	SOX3_SOX2	ENST00000538460.1|DNASE2|ENSG00000105612.4|deoxyribonuclease II, lysosomal
hg19_v2_chr6_-_80247105_80247133	0.00360661	SOX3_SOX2	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr12_-_45269769_45269799	0.00357921	SOX3_SOX2	ENST00000548826.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_-_97200772_97200919	0.00355748	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr17_-_73775839_73775868	0.00355737	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr14_-_21567009_21567173	0.00354629	SOX3_SOX2	ENST00000556174.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000554478.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000553980.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000421093.2|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr8_+_124194875_124194921	0.00353765	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr2_-_160568529_160568563	0.00353616	SOX3_SOX2	ENST00000418770.1|AC009961.3|ENSG00000226266.2|AC009961.3
hg19_v2_chr6_+_72596406_72596454	0.00349012	SOX3_SOX2	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr3_-_121740969_121741106	0.00348556	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr19_-_42348692_42348771	0.00340404	SOX3_SOX2	ENST00000330743.3|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4 	ENST00000601246.1|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4
hg19_v2_chr12_-_54694807_54694905	0.00339329	SOX3_SOX2	ENST00000435572.2|NFE2|ENSG00000123405.9|nuclear factor, erythroid 2
hg19_v2_chr7_-_23571586_23571660	0.00336897	SOX3_SOX2	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr12_-_52887034_52887049	0.00332731	SOX3_SOX2	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr2_-_198540751_198540790	0.00325103	SOX3_SOX2	ENST00000429081.1|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr11_-_71753188_71753200	0.00323877	SOX3_SOX2	ENST00000543009.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr6_+_72596604_72596727	0.00320485	SOX3_SOX2	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr2_-_224467093_224467221	0.00313553	SOX3_SOX2	ENST00000305409.2|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr10_-_123274693_123274769	0.00312187	SOX3_SOX2	ENST00000429361.1|FGFR2|ENSG00000066468.16|fibroblast growth factor receptor 2
hg19_v2_chr13_+_113656022_113656041	0.00311691	SOX3_SOX2	ENST00000423482.2|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr8_+_32579271_32579316	0.00307125	SOX3_SOX2	ENST00000518084.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr3_+_112930387_112930431	0.00306935	SOX3_SOX2	ENST00000485230.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr14_-_106322288_106322325	0.0030691	SOX3_SOX2	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr8_+_9911945_9912011	0.00301768	SOX3_SOX2	ENST00000518255.1|MSRA|ENSG00000175806.10|methionine sulfoxide reductase A
hg19_v2_chr16_+_15068955_15068991	0.00295437	SOX3_SOX2	ENST00000396410.4|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000569715.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000450288.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr3_-_125775629_125775681	0.00289776	SOX3_SOX2	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr11_+_35198243_35198260	0.00288372	SOX3_SOX2	ENST00000528455.1|CD44|ENSG00000026508.12|CD44 molecule (Indian blood group)
hg19_v2_chr3_-_149688655_149688737	0.00286317	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr19_-_14785698_14785810	0.00286179	SOX3_SOX2	ENST00000344373.4|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3 	ENST00000595472.1|EMR3|ENSG00000131355.10|egf-like module containing, mucin-like, hormone receptor-like 3
hg19_v2_chr21_-_27423339_27423352	0.00285317	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr12_+_4758264_4758314	0.00281876	SOX3_SOX2	ENST00000266544.5|NDUFA9|ENSG00000139180.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa
hg19_v2_chr10_+_24498060_24498102	0.00276894	SOX3_SOX2	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr14_-_23451467_23451713	0.00269813	SOX3_SOX2	ENST00000555074.1|RP11-298I3.5|ENSG00000259132.1|RP11-298I3.5	ENST00000361265.4|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr6_-_165989936_165989936	0.0026028	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr3_-_107596910_107596940	0.00257399	SOX3_SOX2	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr2_-_190649082_190649102	0.00257325	SOX3_SOX2	ENST00000392350.3|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae) 	ENST00000392349.4|ORMDL1|ENSG00000128699.9|ORM1-like 1 (S. cerevisiae)
hg19_v2_chr10_-_62060232_62060246	0.00256406	SOX3_SOX2	ENST00000503925.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr19_+_42041537_42041547	0.0025538	SOX3_SOX2	ENST00000597199.1|AC006129.4|ENSG00000270164.1|AC006129.4
hg19_v2_chr8_-_108510224_108510283	0.00254905	SOX3_SOX2	ENST00000517746.1|ANGPT1|ENSG00000154188.5|angiopoietin 1 	ENST00000297450.3|ANGPT1|ENSG00000154188.5|angiopoietin 1
hg19_v2_chr22_+_20105012_20105085	0.002532	SOX3_SOX2	ENST00000331821.3|RANBP1|ENSG00000099901.12|RAN binding protein 1 	ENST00000411892.1|RANBP1|ENSG00000099901.12|RAN binding protein 1
hg19_v2_chr9_-_130639997_130640022	0.00246668	SOX3_SOX2	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr4_+_699537_699600	0.00242324	SOX3_SOX2	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr5_+_55033845_55033870	0.00229882	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr1_+_32084641_32084641	0.00228548	SOX3_SOX2	ENST00000373706.5|HCRTR1|ENSG00000121764.7|hypocretin (orexin) receptor 1
hg19_v2_chr3_-_169530574_169530774	0.00216998	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr3_+_107241882_107241904	0.0021592	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr16_-_69390209_69390209	0.00212203	SOX3_SOX2	ENST00000563634.1|RP11-343C2.9|ENSG00000260371.1|Uncharacterized protein
hg19_v2_chr7_+_86273700_86273716	0.00209133	SOX3_SOX2	ENST00000546348.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr6_+_146350267_146350419	0.00208483	SOX3_SOX2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr4_-_143227088_143227105	0.00204751	SOX3_SOX2	ENST00000511838.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr2_+_207024306_207024392	0.00202076	SOX3_SOX2	ENST00000236957.5|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392221.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000392222.2|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2 	ENST00000445505.1|EEF1B2|ENSG00000114942.9|eukaryotic translation elongation factor 1 beta 2
hg19_v2_chr2_-_216257849_216257907	0.00200786	SOX3_SOX2	ENST00000456923.1|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chr14_+_24641820_24641937	0.00194987	SOX3_SOX2	ENST00000560501.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr12_+_101188718_101188745	0.00191934	SOX3_SOX2	ENST00000299222.9|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392977.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr12_-_11548496_11548505	0.00184708	SOX3_SOX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr11_-_70672645_70672711	0.00175802	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr15_-_88799384_88799430	0.00165364	SOX3_SOX2	ENST00000540489.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000557856.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000558676.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr5_+_14143728_14143829	0.00164621	SOX3_SOX2	ENST00000344204.4|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor 	ENST00000537187.1|TRIO|ENSG00000038382.13|trio Rho guanine nucleotide exchange factor
hg19_v2_chr12_-_16759711_16759734	0.00163332	SOX3_SOX2	ENST00000447609.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr8_-_41754231_41754281	0.00149146	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr4_-_143226979_143226990	0.00144391	SOX3_SOX2	ENST00000514525.1|INPP4B|ENSG00000109452.8|inositol polyphosphate-4-phosphatase, type II, 105kDa
hg19_v2_chr13_+_98795434_98795480	0.00140298	SOX3_SOX2	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr10_-_125853200_125853208	0.00137782	SOX3_SOX2	ENST00000421115.1|CHST15|ENSG00000182022.13|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
hg19_v2_chr14_+_60712463_60712475	0.00131132	SOX3_SOX2	ENST00000325642.3|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A 	ENST00000529574.1|PPM1A|ENSG00000100614.13|protein phosphatase, Mg2+/Mn2+ dependent, 1A
hg19_v2_chr7_+_117120106_117120149	0.00126106	SOX3_SOX2	ENST00000426809.1|CFTR|ENSG00000001626.10|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
hg19_v2_chr4_+_88343952_88343970	0.00117819	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr5_+_162930114_162930125	0.00112391	SOX3_SOX2	ENST00000280969.5|MAT2B|ENSG00000038274.12|methionine adenosyltransferase II, beta
hg19_v2_chr3_-_116164306_116164380	0.00110122	SOX3_SOX2	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr5_+_121647877_121647913	0.00106881	SOX3_SOX2	ENST00000514497.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000261367.7|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr8_+_67405438_67405450	0.00106243	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr7_+_95401877_95401948	0.00101168	SOX3_SOX2	ENST00000524053.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000324972.6|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000537881.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000437599.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000359388.4|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000413338.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr5_-_179072047_179072047	0.000971231	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr14_-_77923897_77923983	0.000904606	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr9_+_135906375_135906404	0.000878196	SOX3_SOX2	ENST00000372099.6|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000372095.5|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000372108.5|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000342018.8|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa 	ENST00000439697.1|GTF3C5|ENSG00000148308.13|general transcription factor IIIC, polypeptide 5, 63kDa
hg19_v2_chr2_+_113816685_113816777	0.000850773	SOX3_SOX2	ENST00000393200.2|IL36RN|ENSG00000136695.10|interleukin 36 receptor antagonist
hg19_v2_chr2_-_20550416_20550463	0.00081749	SOX3_SOX2	ENST00000403432.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2 	ENST00000424110.1|PUM2|ENSG00000055917.11|pumilio RNA-binding family member 2
hg19_v2_chr6_+_12749657_12749699	0.000811831	SOX3_SOX2	ENST00000406205.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr20_-_50418972_50419029	0.000734566	SOX3_SOX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr20_+_55205825_55205938	0.000661324	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr1_-_154150651_154150691	0.00057624	SOX3_SOX2	ENST00000302206.5|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr3_+_189507432_189507459	0.00056581	SOX3_SOX2	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr19_+_57640011_57640011	0.000561102	SOX3_SOX2	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr3_+_54157480_54157547	0.000555065	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr1_-_68698222_68698266	0.000430249	SOX3_SOX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr12_+_94071341_94071493	0.000350312	SOX3_SOX2	ENST00000542893.2|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr1_-_156217875_156217885	0.00032603	SOX3_SOX2	ENST00000292291.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr10_-_97175444_97175481	0.000322508	SOX3_SOX2	ENST00000486141.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr14_-_21994337_21994442	0.000302863	SOX3_SOX2	ENST00000537235.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2 	ENST00000450879.2|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr14_-_21562648_21562659	0.000280533	SOX3_SOX2	ENST00000555270.1|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr7_-_122840015_122840040	0.00025485	SOX3_SOX2	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr6_+_155538093_155538109	0.000249594	SOX3_SOX2	ENST00000462408.2|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr2_+_210444142_210444194	9.80061e-05	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr1_-_155942086_155942145	2.96734e-05	SOX3_SOX2	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
