hg19_v2_chr14_-_88200641_88200643	0.24269	MSX2	ENST00000556168.1|RP11-1152H15.1|ENSG00000258807.1|RP11-1152H15.1
hg19_v2_chr1_+_152943122_152943142	0.185511	MSX2	ENST00000328051.2|SPRR4|ENSG00000184148.3|small proline-rich protein 4
hg19_v2_chr3_-_180397256_180397301	0.111197	MSX2	ENST00000442201.2|CCDC39|ENSG00000145075.7|coiled-coil domain containing 39
hg19_v2_chr12_+_64798826_64798936	0.103349	MSX2	ENST00000540203.1|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr1_+_81001398_81001440	0.0960753	MSX2	ENST00000418041.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1	ENST00000443104.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1
hg19_v2_chr20_-_50418972_50419029	0.0873293	MSX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr3_-_112127981_112128034	0.0817131	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr7_-_2883650_2883775	0.0806231	MSX2	ENST00000544127.1|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr16_-_18923035_18923035	0.0805206	MSX2	ENST00000563836.1|SMG1|ENSG00000157106.12|SMG1 phosphatidylinositol 3-kinase-related kinase
hg19_v2_chr6_+_130339710_130339745	0.0792111	MSX2	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr12_-_9102224_9102331	0.0756279	MSX2	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr8_-_117886563_117886605	0.0725197	MSX2	ENST00000519837.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe) 	ENST00000522699.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr1_-_151762900_151762910	0.0702332	MSX2	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr16_+_58783542_58783581	0.0678412	MSX2	ENST00000500117.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2	ENST00000565722.1|RP11-410D17.2|ENSG00000245768.2|RP11-410D17.2
hg19_v2_chr10_-_99205607_99205779	0.0629502	MSX2	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr3_-_120400960_120401030	0.0621065	MSX2	ENST00000476082.2|HGD|ENSG00000113924.7|homogentisate 1,2-dioxygenase
hg19_v2_chr3_-_141747950_141748004	0.0597772	MSX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr11_+_17298543_17298588	0.0588061	MSX2	ENST00000533926.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr18_+_63273310_63273326	0.0557348	MSX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chr4_-_69434245_69434245	0.0550708	MSX2	ENST00000317746.2|UGT2B17|ENSG00000197888.2|UDP glucuronosyltransferase 2 family, polypeptide B17
hg19_v2_chr7_+_99717230_99717321	0.0527439	MSX2	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr1_+_44115814_44115849	0.0517781	MSX2	ENST00000372396.3|KDM4A|ENSG00000066135.8|lysine (K)-specific demethylase 4A
hg19_v2_chr19_+_41869894_41869961	0.0486106	MSX2	ENST00000413014.2|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr6_-_167040731_167040745	0.0468062	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr10_+_99205894_99205954	0.0466941	MSX2	ENST00000370854.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000393760.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000414567.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370846.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr7_-_2883928_2883993	0.0460412	MSX2	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr10_+_99205959_99205981	0.0446429	MSX2	ENST00000352634.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000353979.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370842.2|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000345745.5|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr17_-_43045439_43045439	0.0440708	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chrX_+_77154935_77155012	0.0420237	MSX2	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chr12_-_120315074_120315097	0.0406366	MSX2	ENST00000261833.7|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21) 	ENST00000392521.2|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21)
hg19_v2_chr3_-_120003941_120004083	0.0397207	MSX2	ENST00000464295.1|GPR156|ENSG00000175697.6|G protein-coupled receptor 156
hg19_v2_chr12_-_95397442_95397546	0.0387941	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr1_-_151762943_151763012	0.0379109	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr12_-_9102549_9102591	0.0377486	MSX2	ENST00000000412.3|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr6_-_116866773_116866854	0.0345404	MSX2	ENST00000368602.3|TRAPPC3L|ENSG00000173626.5|trafficking protein particle complex 3-like
hg19_v2_chr12_-_57039739_57039798	0.0342321	MSX2	ENST00000552959.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000551020.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000553007.2|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552919.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552104.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000262030.3|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
hg19_v2_chr3_+_113251143_113251263	0.0341911	MSX2	ENST00000264852.4|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1 	ENST00000393830.3|SIDT1|ENSG00000072858.6|SID1 transmembrane family, member 1
hg19_v2_chr15_-_37393406_37393528	0.0333872	MSX2	ENST00000338564.5|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000558313.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000340545.5|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr1_+_27158483_27158501	0.0327443	MSX2	ENST00000374141.2|ZDHHC18|ENSG00000204160.7|zinc finger, DHHC-type containing 18
hg19_v2_chr20_-_54967187_54967393	0.0326359	MSX2	ENST00000422322.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000371356.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000451915.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000347343.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395911.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395907.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000441357.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000456249.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000420474.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395909.4|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395914.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000312783.6|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395915.3|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395913.3|AURKA|ENSG00000087586.13|aurora kinase A
hg19_v2_chr11_+_108535752_108535841	0.031277	MSX2	ENST00000322536.3|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr1_-_151965048_151965062	0.0312255	MSX2	ENST00000368809.1|S100A10|ENSG00000197747.4|S100 calcium binding protein A10
hg19_v2_chr5_-_31532238_31532303	0.0306273	MSX2	ENST00000507438.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr5_+_95998070_95998179	0.0298742	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr1_-_47779762_47779827	0.0292402	MSX2	ENST00000371877.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000360380.3|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000337817.5|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus 	ENST00000447475.2|STIL|ENSG00000123473.11|SCL/TAL1 interrupting locus
hg19_v2_chr5_-_132200477_132200477	0.0287851	MSX2	ENST00000296875.2|GDF9|ENSG00000164404.4|growth differentiation factor 9
hg19_v2_chr5_+_150639360_150639450	0.0284948	MSX2	ENST00000523004.1|GM2A|ENSG00000196743.4|GM2 ganglioside activator
hg19_v2_chr17_+_67759813_67759832	0.0282175	MSX2	ENST00000587241.1|AC003051.1|ENSG00000227517.2|AC003051.1
hg19_v2_chr20_+_54967663_54967740	0.0281161	MSX2	ENST00000452950.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chr1_-_151431674_151431691	0.0278301	MSX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr6_-_167040693_167040725	0.0276665	MSX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_-_68698197_68698214	0.0272423	MSX2	ENST00000370973.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000370971.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr9_+_34646624_34646649	0.0265867	MSX2	ENST00000450095.2|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase 	ENST00000556278.1|GALT|ENSG00000258728.1|Uncharacterized protein
hg19_v2_chr20_-_50418947_50418964	0.0264394	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr14_-_23504432_23504448	0.0260305	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr20_-_50722183_50722217	0.0256773	MSX2	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr11_-_124981475_124981659	0.0246813	MSX2	ENST00000532156.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000532407.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000279968.4|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527766.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529583.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000524373.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000527271.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000526175.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529609.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000533273.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000531909.1|TMEM218|ENSG00000150433.5|transmembrane protein 218 	ENST00000529530.1|TMEM218|ENSG00000150433.5|transmembrane protein 218
hg19_v2_chr7_+_100183927_100183957	0.0244109	MSX2	ENST00000241071.6|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000360609.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr2_-_200335983_200335994	0.0239466	MSX2	ENST00000457245.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr9_+_34646651_34646689	0.0237438	MSX2	ENST00000378842.3|GALT|ENSG00000213930.7|galactose-1-phosphate uridylyltransferase
hg19_v2_chr12_+_54718904_54718936	0.0235459	MSX2	ENST00000262061.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549043.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552218.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000553231.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000552362.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000455864.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000416254.2|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000549116.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1 	ENST00000551779.1|COPZ1|ENSG00000111481.5|coatomer protein complex, subunit zeta 1
hg19_v2_chr5_+_95997885_95997914	0.0227797	MSX2	ENST00000511097.2|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr17_-_12920907_12920987	0.0227077	MSX2	ENST00000609757.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000581499.2|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000580504.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2
hg19_v2_chr16_+_69345243_69345312	0.0218847	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr1_-_36916066_36916092	0.0202433	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chrX_-_48931648_48931730	0.0201041	MSX2	ENST00000376386.3|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2 	ENST00000376390.4|PRAF2|ENSG00000243279.2|PRA1 domain family, member 2
hg19_v2_chr17_+_12569306_12569344	0.0199898	MSX2	ENST00000425538.1|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr11_-_71823715_71823792	0.0195652	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr6_-_111927062_111927125	0.0195177	MSX2	ENST00000359831.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr1_-_151431647_151431669	0.0191655	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr5_-_31532160_31532221	0.017839	MSX2	ENST00000511367.2|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III 	ENST00000513349.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr17_-_9929581_9929626	0.017686	MSX2	ENST00000437099.2|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000396115.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr4_-_69536346_69536371	0.0173871	MSX2	ENST00000338206.5|UGT2B15|ENSG00000196620.4|UDP glucuronosyltransferase 2 family, polypeptide B15
hg19_v2_chr2_+_150187020_150187120	0.0172393	MSX2	ENST00000334166.4|LYPD6|ENSG00000187123.10|LY6/PLAUR domain containing 6
hg19_v2_chr1_-_158173659_158173674	0.0172138	MSX2	ENST00000415019.1|RP11-404O13.5|ENSG00000176320.2|RP11-404O13.5
hg19_v2_chr7_-_99716940_99716943	0.0172052	MSX2	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr14_-_23504337_23504369	0.0166996	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr7_+_134331550_134331593	0.0162062	MSX2	ENST00000344924.3|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000418040.1|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase 	ENST00000393132.2|BPGM|ENSG00000172331.7|2,3-bisphosphoglycerate mutase
hg19_v2_chr6_+_30687978_30688141	0.0151714	MSX2	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr17_+_12569472_12569506	0.0144542	MSX2	ENST00000343344.4|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chrX_+_70752917_70752933	0.0143335	MSX2	ENST00000373719.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr11_+_17298342_17298378	0.0142166	MSX2	ENST00000530964.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr1_+_151735431_151735446	0.0140685	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr22_-_30960876_30960901	0.0133813	MSX2	ENST00000401975.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000428682.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000423299.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr3_+_186353756_186353761	0.0128129	MSX2	ENST00000431018.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000450521.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000539949.1|FETUB|ENSG00000090512.7|fetuin B
hg19_v2_chr9_+_74729511_74729525	0.0127217	MSX2	ENST00000545168.1|GDA|ENSG00000119125.12|guanine deaminase
hg19_v2_chr20_+_30467600_30467641	0.0123931	MSX2	ENST00000375934.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9 	ENST00000375922.4|TTLL9|ENSG00000131044.12|tubulin tyrosine ligase-like family, member 9
hg19_v2_chr4_-_109684120_109684217	0.012308	MSX2	ENST00000512646.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000411864.2|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000296486.3|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000510706.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase
hg19_v2_chr1_-_23694794_23694879	0.011973	MSX2	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chr1_-_94050668_94050724	0.0115685	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chrX_+_70752945_70752973	0.0107073	MSX2	ENST00000373701.3|OGT|ENSG00000147162.9|O-linked N-acetylglucosamine (GlcNAc) transferase
hg19_v2_chr6_-_31830655_31830683	0.0107034	MSX2	ENST00000375631.4|NEU1|ENSG00000204386.6|sialidase 1 (lysosomal sialidase)
hg19_v2_chr7_+_130794846_130794873	0.0103719	MSX2	ENST00000421797.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr15_+_80351910_80351955	0.0103718	MSX2	ENST00000261749.6|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000561060.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr3_-_48672859_48672926	0.00957524	MSX2	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr20_+_49126881_49126936	0.00927099	MSX2	ENST00000371621.3|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1 	ENST00000541713.1|PTPN1|ENSG00000196396.5|protein tyrosine phosphatase, non-receptor type 1
hg19_v2_chr6_+_160183492_160183523	0.00819974	MSX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr11_-_71823796_71823826	0.00790444	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr4_-_138453606_138453673	0.00790443	MSX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr19_+_17378278_17378311	0.00733325	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr1_-_21377383_21377395	0.00626103	MSX2	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr8_+_38831683_38831702	0.00625061	MSX2	ENST00000302495.4|HTRA4|ENSG00000169495.4|HtrA serine peptidase 4
hg19_v2_chr1_-_68698222_68698266	0.00618147	MSX2	ENST00000370976.3|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000354777.2|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000262348.4|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator 	ENST00000540432.1|WLS|ENSG00000116729.9|wntless Wnt ligand secretion mediator
hg19_v2_chr10_-_56561022_56561051	0.00607224	MSX2	ENST00000373965.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000414778.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395438.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000409834.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395445.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395446.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395442.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395440.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395432.2|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000361849.3|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395433.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000320301.6|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000395430.1|PCDH15|ENSG00000150275.13|protocadherin-related 15 	ENST00000437009.1|PCDH15|ENSG00000150275.13|protocadherin-related 15
hg19_v2_chr3_-_114866084_114866118	0.00583322	MSX2	ENST00000357258.3|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr13_-_103389159_103389159	0.00500781	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr1_-_151431909_151431987	0.00476776	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr2_-_98280383_98280570	0.00457842	MSX2	ENST00000289228.5|ACTR1B|ENSG00000115073.6|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)
hg19_v2_chr20_+_56964169_56964182	0.00444419	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr9_+_80912059_80912081	0.00381994	MSX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr11_-_71823266_71823325	0.00260017	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr1_-_8877692_8877732	0.00220617	MSX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr4_-_171012844_171012850	0.00198702	MSX2	ENST00000502392.1|AADAT|ENSG00000109576.9|aminoadipate aminotransferase
hg19_v2_chr8_+_1993173_1993199	0.00188303	MSX2	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr2_+_187371440_187371567	0.00179904	MSX2	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr11_+_108535849_108535863	0.00161596	MSX2	ENST00000526794.1|DDX10|ENSG00000178105.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
hg19_v2_chr11_+_33061543_33061585	0.0013084	MSX2	ENST00000432887.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000528898.1|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1 	ENST00000531632.2|TCP11L1|ENSG00000176148.11|t-complex 11, testis-specific-like 1
hg19_v2_chr9_-_5339873_5339881	0.00108053	MSX2	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr8_+_1993152_1993168	0.000742408	MSX2	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr19_+_11485333_11485367	0.000245113	MSX2	ENST00000312423.2|SWSAP1|ENSG00000173928.2|SWIM-type zinc finger 7 associated protein 1
