hg19_v2_chr5_-_119669160_119669197	1.00531	MSX1	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr7_+_106415457_106415522	0.788222	MSX1	ENST00000490162.2|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1	ENST00000470135.1|RP5-884M6.1|ENSG00000228742.5|RP5-884M6.1
hg19_v2_chr8_-_25281747_25281779	0.748905	MSX1	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr21_+_17792672_17792775	0.631102	MSX1	ENST00000602620.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr19_-_45457264_45457264	0.599248	MSX1	ENST00000591646.1|CTB-129P6.11|ENSG00000267114.1|Uncharacterized protein
hg19_v2_chr17_+_74729060_74729060	0.571478	MSX1	ENST00000587459.1|RP11-318A15.7|ENSG00000267168.1|Uncharacterized protein
hg19_v2_chr5_-_138739739_138739793	0.507488	MSX1	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr4_+_9446156_9446260	0.414366	MSX1	ENST00000334879.1|DEFB131|ENSG00000186146.1|defensin, beta 131
hg19_v2_chr22_-_32767017_32767063	0.331882	MSX1	ENST00000400234.1|RFPL3S|ENSG00000205853.6|RFPL3 antisense
hg19_v2_chr10_-_61899124_61899158	0.312006	MSX1	ENST00000373815.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_+_196313239_196313256	0.308464	MSX1	ENST00000413290.1|AC064834.1|ENSG00000224099.1|AC064834.1
hg19_v2_chr6_+_28249299_28249319	0.301677	MSX1	ENST00000405948.2|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr6_+_26020672_26020718	0.290366	MSX1	ENST00000357647.3|HIST1H3A|ENSG00000198366.5|histone cluster 1, H3a
hg19_v2_chr21_+_39668478_39668496	0.288081	MSX1	ENST00000398927.1|KCNJ15|ENSG00000157551.13|potassium inwardly-rectifying channel, subfamily J, member 15
hg19_v2_chr16_-_71518504_71518542	0.277683	MSX1	ENST00000565100.2|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr15_+_77713222_77713271	0.273967	MSX1	ENST00000558176.1|HMG20A|ENSG00000140382.10|high mobility group 20A
hg19_v2_chr13_-_81801115_81801122	0.272742	MSX1	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr7_-_16840820_16841011	0.269381	MSX1	ENST00000450569.1|AGR2|ENSG00000106541.7|anterior gradient 2
hg19_v2_chr11_-_85376121_85376181	0.259939	MSX1	ENST00000527447.1|CREBZF|ENSG00000137504.9|CREB/ATF bZIP transcription factor
hg19_v2_chr19_+_3762645_3762690	0.257478	MSX1	ENST00000330133.4|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr21_+_33671264_33671283	0.257416	MSX1	ENST00000339944.4|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr19_+_3762703_3762719	0.246088	MSX1	ENST00000589174.1|MRPL54|ENSG00000183617.4|mitochondrial ribosomal protein L54
hg19_v2_chr7_-_105332084_105332111	0.245623	MSX1	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr14_+_101293687_101293748	0.22867	MSX1	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr17_-_47786375_47786400	0.226327	MSX1	ENST00000511657.1|SLC35B1|ENSG00000121073.9|solute carrier family 35, member B1
hg19_v2_chr4_+_71384300_71384314	0.220185	MSX1	ENST00000504451.1|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr4_-_120243545_120243562	0.216669	MSX1	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr20_+_5731027_5731055	0.211896	MSX1	ENST00000378979.4|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000303142.6|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chrX_+_1710484_1710537	0.21048	MSX1	ENST00000313871.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A 	ENST00000381261.3|AKAP17A|ENSG00000197976.6|A kinase (PRKA) anchor protein 17A
hg19_v2_chr7_+_16793160_16793160	0.209907	MSX1	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr14_-_73997901_73997916	0.202337	MSX1	ENST00000557603.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4 	ENST00000556455.1|HEATR4|ENSG00000187105.4|HEAT repeat containing 4
hg19_v2_chr12_+_9066472_9066492	0.200615	MSX1	ENST00000538657.1|PHC1|ENSG00000111752.6|polyhomeotic homolog 1 (Drosophila)
hg19_v2_chr3_-_21792838_21792927	0.197653	MSX1	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr3_-_180397256_180397301	0.195822	MSX1	ENST00000442201.2|CCDC39|ENSG00000145075.7|coiled-coil domain containing 39
hg19_v2_chr8_-_121824374_121824391	0.195752	MSX1	ENST00000517992.1|SNTB1|ENSG00000172164.9|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
hg19_v2_chr9_-_70465758_70465758	0.195459	MSX1	ENST00000489273.1|CBWD5|ENSG00000147996.12|COBW domain containing 5
hg19_v2_chr12_-_10978957_10978957	0.195326	MSX1	ENST00000240619.2|TAS2R10|ENSG00000121318.2|taste receptor, type 2, member 10
hg19_v2_chr5_+_121647386_121647464	0.190275	MSX1	ENST00000542191.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000506272.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000508681.1|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000509154.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr6_-_109776901_109776994	0.181337	MSX1	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr14_-_101295407_101295537	0.176484	MSX1	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr2_-_219031709_219031720	0.172068	MSX1	ENST00000295683.2|CXCR1|ENSG00000163464.7|chemokine (C-X-C motif) receptor 1
hg19_v2_chr6_+_118869452_118869475	0.16214	MSX1	ENST00000357525.5|PLN|ENSG00000198523.5|phospholamban
hg19_v2_chr7_+_141408153_141408153	0.160671	MSX1	ENST00000397541.2|WEE2|ENSG00000214102.3|WEE1 homolog 2 (S. pombe)
hg19_v2_chr22_+_51176624_51176663	0.157116	MSX1	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr6_+_108616243_108616405	0.1528	MSX1	ENST00000421954.1|LACE1|ENSG00000135537.12|lactation elevated 1
hg19_v2_chr9_+_44868935_44868935	0.150077	MSX1	ENST00000448436.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr19_+_18303992_18304039	0.148742	MSX1	ENST00000599612.2|MPV17L2|ENSG00000254858.5|MPV17 mitochondrial membrane protein-like 2
hg19_v2_chr16_-_66583994_66584010	0.147485	MSX1	ENST00000564917.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr11_-_102401469_102401488	0.147355	MSX1	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr3_+_187957646_187957656	0.147207	MSX1	ENST00000457242.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr13_-_52733980_52734002	0.146997	MSX1	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr3_-_47555167_47555251	0.145503	MSX1	ENST00000296149.4|ELP6|ENSG00000163832.11|elongator acetyltransferase complex subunit 6
hg19_v2_chr14_+_50291993_50291993	0.145228	MSX1	ENST00000595378.1|AL627171.2|ENSG00000269832.1|HCG1786899; PRO2610; Uncharacterized protein
hg19_v2_chr12_+_105380073_105380122	0.144949	MSX1	ENST00000552951.1|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45 	ENST00000280749.5|C12orf45|ENSG00000151131.5|chromosome 12 open reading frame 45
hg19_v2_chr18_-_70532906_70532934	0.143131	MSX1	ENST00000299430.2|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1 	ENST00000397929.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr4_-_186696425_186696452	0.141689	MSX1	ENST00000430503.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319454.6|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000450341.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr2_+_242498135_242498136	0.141496	MSX1	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr6_+_130339710_130339745	0.14026	MSX1	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr19_-_39805976_39805976	0.140177	MSX1	ENST00000248668.4|LRFN1|ENSG00000128011.4|leucine rich repeat and fibronectin type III domain containing 1
hg19_v2_chr16_+_28985542_28985642	0.137772	MSX1	ENST00000567771.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila) 	ENST00000568388.1|SPNS1|ENSG00000169682.13|spinster homolog 1 (Drosophila)
hg19_v2_chr17_-_55162360_55162385	0.132718	MSX1	ENST00000576871.1|RP11-166P13.3|ENSG00000263004.1|RP11-166P13.3	ENST00000576313.1|RP11-166P13.3|ENSG00000263004.1|RP11-166P13.3
hg19_v2_chr5_-_177207634_177207677	0.131836	MSX1	ENST00000513554.1|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A 	ENST00000440605.3|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A
hg19_v2_chr11_-_128894053_128894123	0.128929	MSX1	ENST00000392657.3|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chr17_+_72931876_72931897	0.127851	MSX1	ENST00000328801.4|OTOP3|ENSG00000182938.4|otopetrin 3
hg19_v2_chr12_-_52604607_52604639	0.127766	MSX1	ENST00000551894.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80 	ENST00000553017.1|C12orf80|ENSG00000257137.1|chromosome 12 open reading frame 80
hg19_v2_chr5_+_121465207_121465216	0.125651	MSX1	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr19_+_107471_107471	0.124622	MSX1	ENST00000585993.1|OR4F17|ENSG00000176695.5|olfactory receptor, family 4, subfamily F, member 17
hg19_v2_chr5_+_140220769_140220907	0.123749	MSX1	ENST00000531613.1|PCDHA8|ENSG00000204962.4|protocadherin alpha 8 	ENST00000378123.3|PCDHA8|ENSG00000204962.4|protocadherin alpha 8
hg19_v2_chrX_+_23928500_23928500	0.1225	MSX1	ENST00000435707.1|CXorf58|ENSG00000165182.6|chromosome X open reading frame 58
hg19_v2_chr13_-_52733670_52733760	0.121624	MSX1	ENST00000550841.1|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr6_+_28092338_28092412	0.120268	MSX1	ENST00000340487.4|ZSCAN16|ENSG00000196812.4|zinc finger and SCAN domain containing 16
hg19_v2_chr6_-_32908765_32908786	0.119899	MSX1	ENST00000416244.2|HLA-DMB|ENSG00000242574.4|major histocompatibility complex, class II, DM beta
hg19_v2_chr6_-_150212029_150212170	0.118778	MSX1	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr9_+_12695702_12695720	0.11857	MSX1	ENST00000381136.2|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr11_+_58695096_58695118	0.116593	MSX1	ENST00000525608.1|GLYATL1|ENSG00000166840.9|glycine-N-acyltransferase-like 1 	ENST00000526351.1|GLYATL1|ENSG00000166840.9|glycine-N-acyltransferase-like 1
hg19_v2_chr4_-_186570679_186570760	0.11627	MSX1	ENST00000451974.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr6_+_28249332_28249391	0.114968	MSX1	ENST00000259883.3|PGBD1|ENSG00000137338.4|piggyBac transposable element derived 1
hg19_v2_chr1_-_54405773_54405874	0.113276	MSX1	ENST00000371376.1|HSPB11|ENSG00000081870.7|heat shock protein family B (small), member 11
hg19_v2_chr2_-_31361543_31361592	0.112678	MSX1	ENST00000349752.5|GALNT14|ENSG00000158089.10|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
hg19_v2_chr6_-_109777128_109777203	0.112328	MSX1	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr21_+_30502806_30502989	0.111641	MSX1	ENST00000399928.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like 	ENST00000399926.1|MAP3K7CL|ENSG00000156265.11|MAP3K7 C-terminal like
hg19_v2_chr16_-_66584059_66584315	0.110911	MSX1	ENST00000417693.3|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000544898.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000569718.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000527284.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000299697.7|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000451102.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr17_+_55162453_55162594	0.109444	MSX1	ENST00000575322.1|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000337714.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1 	ENST00000314126.3|AKAP1|ENSG00000121057.8|A kinase (PRKA) anchor protein 1
hg19_v2_chr5_-_147162078_147162106	0.106717	MSX1	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr21_+_33671160_33671172	0.103546	MSX1	ENST00000303645.5|MRAP|ENSG00000170262.8|melanocortin 2 receptor accessory protein
hg19_v2_chr4_+_119809984_119810024	0.103169	MSX1	ENST00000307142.4|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000448416.2|SYNPO2|ENSG00000172403.6|synaptopodin 2 	ENST00000429713.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr14_+_68086515_68086595	0.101574	MSX1	ENST00000261783.3|ARG2|ENSG00000081181.3|arginase 2
hg19_v2_chr16_-_66583701_66583783	0.101411	MSX1	ENST00000527800.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000525974.1|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial 	ENST00000563369.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr4_+_5526883_5526883	0.101304	MSX1	ENST00000195455.2|C4orf6|ENSG00000082929.4|chromosome 4 open reading frame 6
hg19_v2_chr6_-_31830655_31830683	0.0998662	MSX1	ENST00000375631.4|NEU1|ENSG00000204386.6|sialidase 1 (lysosomal sialidase)
hg19_v2_chr2_+_32502952_32503025	0.0988323	MSX1	ENST00000238831.4|YIPF4|ENSG00000119820.6|Yip1 domain family, member 4
hg19_v2_chr3_-_123339418_123339473	0.0952735	MSX1	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr6_-_32095968_32096032	0.0945774	MSX1	ENST00000375203.3|ATF6B|ENSG00000213676.6|activating transcription factor 6 beta 	ENST00000375201.4|ATF6B|ENSG00000213676.6|activating transcription factor 6 beta
hg19_v2_chr18_+_61637159_61637483	0.0933012	MSX1	ENST00000397985.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000353706.2|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000542677.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000397988.3|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8 	ENST00000448851.1|SERPINB8|ENSG00000166401.9|serpin peptidase inhibitor, clade B (ovalbumin), member 8
hg19_v2_chr6_-_76072719_76072770	0.0928636	MSX1	ENST00000370020.1|FILIP1|ENSG00000118407.10|filamin A interacting protein 1
hg19_v2_chr1_+_160160283_160160292	0.0894989	MSX1	ENST00000368079.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr12_+_7864021_7864050	0.0893341	MSX1	ENST00000345088.2|DPPA3|ENSG00000187569.2|developmental pluripotency associated 3
hg19_v2_chrX_-_119149501_119149662	0.0878832	MSX1	ENST00000454625.1|GS1-421I3.2|ENSG00000234493.1|GS1-421I3.2
hg19_v2_chr16_-_66584015_66584035	0.0876632	MSX1	ENST00000545043.2|TK2|ENSG00000166548.11|thymidine kinase 2, mitochondrial
hg19_v2_chr4_+_5527117_5527117	0.0837564	MSX1	ENST00000505296.1|C4orf6|ENSG00000082929.4|chromosome 4 open reading frame 6
hg19_v2_chr11_-_66964638_66964638	0.0836542	MSX1	ENST00000444002.2|AP001885.1|ENSG00000179038.7|AP001885.1
hg19_v2_chr2_+_7073174_7073194	0.0818593	MSX1	ENST00000416587.1|RNF144A|ENSG00000151692.10|ring finger protein 144A
hg19_v2_chr3_-_123339343_123339401	0.0811861	MSX1	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr1_+_160160346_160160401	0.0802342	MSX1	ENST00000368078.3|CASQ1|ENSG00000143318.8|calsequestrin 1 (fast-twitch, skeletal muscle)
hg19_v2_chr8_+_1993152_1993168	0.0802244	MSX1	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr10_-_101380121_101380235	0.0802046	MSX1	ENST00000370495.4|SLC25A28|ENSG00000155287.6|solute carrier family 25 (mitochondrial iron transporter), member 28
hg19_v2_chr9_-_23779367_23779378	0.0794181	MSX1	ENST00000440102.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr8_+_97597148_97597173	0.0781879	MSX1	ENST00000521590.1|SDC2|ENSG00000169439.7|syndecan 2
hg19_v2_chr8_-_72274095_72274116	0.078149	MSX1	ENST00000303824.7|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr9_-_128246769_128246780	0.0777962	MSX1	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr12_+_9980069_9980087	0.0776811	MSX1	ENST00000354855.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000324214.4|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000279544.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1
hg19_v2_chr12_-_11150474_11150474	0.0766482	MSX1	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chrX_-_103499602_103499617	0.0763697	MSX1	ENST00000372588.4|ESX1|ENSG00000123576.5|ESX homeobox 1
hg19_v2_chr3_+_190105909_190105966	0.0763592	MSX1	ENST00000456423.1|CLDN16|ENSG00000113946.3|claudin 16
hg19_v2_chr12_+_14561422_14561431	0.0753315	MSX1	ENST00000541056.1|ATF7IP|ENSG00000171681.8|activating transcription factor 7 interacting protein
hg19_v2_chr19_+_55043977_55044008	0.0747107	MSX1	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr20_+_34129770_34129879	0.0744866	MSX1	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr5_+_150404904_150404928	0.0743538	MSX1	ENST00000521632.1|GPX3|ENSG00000211445.7|glutathione peroxidase 3 (plasma)
hg19_v2_chr4_+_119810134_119810192	0.0727491	MSX1	ENST00000434046.2|SYNPO2|ENSG00000172403.6|synaptopodin 2
hg19_v2_chr1_-_109935819_109935979	0.0705672	MSX1	ENST00000538502.1|SORT1|ENSG00000134243.7|sortilin 1
hg19_v2_chr1_-_19426149_19426221	0.0692013	MSX1	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr8_+_1993173_1993199	0.0690139	MSX1	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr1_-_114429997_114430077	0.0660266	MSX1	ENST00000471267.1|BCL2L15|ENSG00000188761.7|BCL2-like 15 	ENST00000393320.3|BCL2L15|ENSG00000188761.7|BCL2-like 15
hg19_v2_chr1_-_167487758_167487792	0.0629693	MSX1	ENST00000362089.5|CD247|ENSG00000198821.6|CD247 molecule
hg19_v2_chr18_-_3874271_3874337	0.0617011	MSX1	ENST00000400149.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400155.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1 	ENST00000400150.3|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr18_-_3874247_3874262	0.0616865	MSX1	ENST00000581699.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr10_+_90346519_90346519	0.0610721	MSX1	ENST00000371939.3|LIPJ|ENSG00000204022.5|lipase, family member J
hg19_v2_chr11_+_92085262_92085262	0.0605182	MSX1	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr10_-_29923893_29923907	0.0600215	MSX1	ENST00000355867.4|SVIL|ENSG00000197321.10|supervillin
hg19_v2_chr15_-_76304731_76304785	0.0596362	MSX1	ENST00000394907.3|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr9_+_133539981_133539981	0.0595221	MSX1	ENST00000253008.2|PRDM12|ENSG00000130711.3|PR domain containing 12
hg19_v2_chr18_-_5396271_5396333	0.0589885	MSX1	ENST00000579951.1|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3
hg19_v2_chr11_+_61197572_61197620	0.0589242	MSX1	ENST00000542074.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000534878.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000537782.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2 	ENST00000543265.1|SDHAF2|ENSG00000167985.2|succinate dehydrogenase complex assembly factor 2
hg19_v2_chr8_+_117963190_117963224	0.0588069	MSX1	ENST00000427715.2|SLC30A8|ENSG00000164756.8|solute carrier family 30 (zinc transporter), member 8
hg19_v2_chr3_+_108308513_108308558	0.058204	MSX1	ENST00000361582.3|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr2_+_202098203_202098256	0.0580767	MSX1	ENST00000450491.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000440732.1|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase 	ENST00000392258.3|CASP8|ENSG00000064012.17|caspase 8, apoptosis-related cysteine peptidase
hg19_v2_chr1_-_72566613_72566642	0.0574604	MSX1	ENST00000306821.3|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr7_-_32338917_32338946	0.0572842	MSX1	ENST00000396193.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr11_+_12132117_12132160	0.0572527	MSX1	ENST00000256194.4|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2
hg19_v2_chr7_+_36450169_36450224	0.056815	MSX1	ENST00000428612.1|ANLN|ENSG00000011426.6|anillin, actin binding protein
hg19_v2_chr1_-_35450897_35450954	0.0558706	MSX1	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chrX_-_110507098_110507117	0.0557124	MSX1	ENST00000541758.1|CAPN6|ENSG00000077274.7|calpain 6
hg19_v2_chr8_+_24241969_24241999	0.0555666	MSX1	ENST00000522298.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr5_-_75919217_75919250	0.0555533	MSX1	ENST00000504899.1|F2RL2|ENSG00000164220.6|coagulation factor II (thrombin) receptor-like 2
hg19_v2_chr7_+_7811992_7811992	0.0551788	MSX1	ENST00000406829.1|RPA3-AS1|ENSG00000219545.5|RPA3 antisense RNA 1
hg19_v2_chr3_+_171561127_171561306	0.0550331	MSX1	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chrX_+_134654540_134654591	0.0547131	MSX1	ENST00000370752.4|DDX26B|ENSG00000165359.10|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
hg19_v2_chr12_-_82752565_82752579	0.054679	MSX1	ENST00000256151.7|CCDC59|ENSG00000133773.7|coiled-coil domain containing 59
hg19_v2_chr1_+_8021954_8022038	0.052515	MSX1	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr20_+_5731083_5731100	0.0523054	MSX1	ENST00000445603.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196 	ENST00000442185.1|C20orf196|ENSG00000171984.10|chromosome 20 open reading frame 196
hg19_v2_chr5_+_102594403_102594445	0.0521516	MSX1	ENST00000319933.2|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr11_+_60681346_60681431	0.0512995	MSX1	ENST00000227525.3|TMEM109|ENSG00000110108.5|transmembrane protein 109
hg19_v2_chr10_+_97709725_97709725	0.0510257	MSX1	ENST00000472454.2|RP11-248J23.6|ENSG00000269948.1|Protein LOC100652732
hg19_v2_chr2_-_136288113_136288301	0.0507492	MSX1	ENST00000401392.1|ZRANB3|ENSG00000121988.13|zinc finger, RAN-binding domain containing 3
hg19_v2_chr9_+_75229616_75229616	0.0505054	MSX1	ENST00000340019.3|TMC1|ENSG00000165091.11|transmembrane channel-like 1
hg19_v2_chr13_+_50570019_50570028	0.0483092	MSX1	ENST00000442421.1|TRIM13|ENSG00000204977.5|tripartite motif containing 13
hg19_v2_chr8_+_24241789_24241802	0.0481752	MSX1	ENST00000256412.4|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1 	ENST00000538205.1|ADAMDEC1|ENSG00000134028.10|ADAM-like, decysin 1
hg19_v2_chr6_+_131894284_131894378	0.0478291	MSX1	ENST00000368087.3|ARG1|ENSG00000118520.9|arginase 1 	ENST00000356962.2|ARG1|ENSG00000118520.9|arginase 1
hg19_v2_chr1_-_167487808_167487847	0.0473529	MSX1	ENST00000392122.3|CD247|ENSG00000198821.6|CD247 molecule
hg19_v2_chr1_+_76540386_76540445	0.046227	MSX1	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr13_-_88323218_88323434	0.0453137	MSX1	ENST00000436290.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000453832.2|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding) 	ENST00000606590.1|MIR4500HG|ENSG00000228824.2|MIR4500 host gene (non-protein coding)
hg19_v2_chr12_-_10541575_10541616	0.0443486	MSX1	ENST00000540818.1|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr15_+_79166065_79166163	0.0441894	MSX1	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chr1_-_2461684_2461710	0.0428632	MSX1	ENST00000378453.3|HES5|ENSG00000197921.5|hes family bHLH transcription factor 5
hg19_v2_chr21_+_43619796_43619811	0.041266	MSX1	ENST00000398457.2|ABCG1|ENSG00000160179.14|ATP-binding cassette, sub-family G (WHITE), member 1
hg19_v2_chr10_-_43892668_43892794	0.0405797	MSX1	ENST00000544000.1|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr15_+_77712993_77713081	0.0384135	MSX1	ENST00000336216.4|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000381714.3|HMG20A|ENSG00000140382.10|high mobility group 20A 	ENST00000558651.1|HMG20A|ENSG00000140382.10|high mobility group 20A
hg19_v2_chr4_+_113568207_113568367	0.0349888	MSX1	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr13_-_45048386_45048415	0.0345126	MSX1	ENST00000472477.1|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr9_-_15510287_15510309	0.0332359	MSX1	ENST00000397519.2|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1
hg19_v2_chr10_+_32873190_32873190	0.0331234	MSX1	ENST00000375025.4|C10orf68|ENSG00000150076.18|Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 5, mRNA.
hg19_v2_chr6_-_32784687_32784839	0.033047	MSX1	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr5_+_175490540_175490540	0.0309656	MSX1	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr8_-_99057742_99057818	0.030776	MSX1	ENST00000521291.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000396070.2|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000523172.1|RPL30|ENSG00000156482.6|ribosomal protein L30 	ENST00000287038.3|RPL30|ENSG00000156482.6|ribosomal protein L30
hg19_v2_chr15_+_67813406_67813492	0.0283416	MSX1	ENST00000342683.4|C15orf61|ENSG00000189227.4|chromosome 15 open reading frame 61
hg19_v2_chr17_-_37934466_37934481	0.0277937	MSX1	ENST00000583368.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr4_+_159442878_159442977	0.027785	MSX1	ENST00000307765.5|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1 	ENST00000423548.1|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chr3_+_93781728_93781760	0.0245868	MSX1	ENST00000314622.4|NSUN3|ENSG00000178694.5|NOP2/Sun domain family, member 3
hg19_v2_chr17_-_30228678_30228784	0.0245135	MSX1	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr10_+_135204338_135204338	0.0233448	MSX1	ENST00000468317.2|RP11-108K14.8|ENSG00000254536.1|Mitochondrial GTPase 1
hg19_v2_chr3_+_114012819_114012833	0.0221335	MSX1	ENST00000383671.3|TIGIT|ENSG00000181847.7|T cell immunoreceptor with Ig and ITIM domains
hg19_v2_chr4_+_159443024_159443056	0.021616	MSX1	ENST00000448688.2|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chr1_-_209792111_209792143	0.0215647	MSX1	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chrX_-_122756660_122756696	0.0211298	MSX1	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr6_+_136172820_136172846	0.0209648	MSX1	ENST00000308191.6|PDE7B|ENSG00000171408.9|phosphodiesterase 7B
hg19_v2_chr22_+_41697520_41697613	0.0199543	MSX1	ENST00000352645.4|ZC3H7B|ENSG00000100403.10|zinc finger CCCH-type containing 7B
hg19_v2_chrX_+_73164149_73164166	0.0198995	MSX1	ENST00000602938.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602294.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602920.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602737.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding) 	ENST00000602772.1|JPX|ENSG00000225470.2|JPX transcript, XIST activator (non-protein coding)
hg19_v2_chr16_+_69345243_69345312	0.0184003	MSX1	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr15_-_77712429_77712473	0.017981	MSX1	ENST00000564328.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1 	ENST00000558305.1|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr1_+_44514040_44514064	0.0158644	MSX1	ENST00000431800.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4	ENST00000437643.1|RP5-1198O20.4|ENSG00000230615.2|RP5-1198O20.4
hg19_v2_chr11_+_22694123_22694154	0.015488	MSX1	ENST00000534801.1|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr1_+_46805832_46805874	0.0151035	MSX1	ENST00000474844.1|NSUN4|ENSG00000117481.6|NOP2/Sun domain family, member 4
hg19_v2_chr15_+_51669444_51669479	0.0147544	MSX1	ENST00000396399.2|GLDN|ENSG00000186417.9|gliomedin
hg19_v2_chr17_-_42441204_42441243	0.0144392	MSX1	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr8_+_30244580_30244749	0.0139116	MSX1	ENST00000523115.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing 	ENST00000519647.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing
hg19_v2_chr5_+_140762268_140762467	0.0131175	MSX1	ENST00000518325.1|PCDHGA7|ENSG00000253537.1|protocadherin gamma subfamily A, 7
hg19_v2_chr15_-_42500351_42500523	0.0122728	MSX1	ENST00000348544.4|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae) 	ENST00000318006.5|VPS39|ENSG00000166887.11|vacuolar protein sorting 39 homolog (S. cerevisiae)
hg19_v2_chr2_-_169746878_169746970	0.0116232	MSX1	ENST00000282074.2|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr3_-_123512688_123512717	0.00978133	MSX1	ENST00000475616.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr20_+_56964169_56964182	0.00956677	MSX1	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr14_+_55595960_55595978	0.00814196	MSX1	ENST00000554715.1|LGALS3|ENSG00000131981.11|lectin, galactoside-binding, soluble, 3
hg19_v2_chr2_-_145278475_145278621	0.00411031	MSX1	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr2_+_158114051_158114110	0.000956706	MSX1	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr13_+_103459704_103459704	0.00016791	MSX1	ENST00000602836.1|BIVM-ERCC5|ENSG00000270181.1|BIVM-ERCC5 readthrough
