hg19_v2_chr4_+_74606223_74606293	0.749475	HOXD9	ENST00000307407.3|IL8|ENSG00000169429.6|interleukin 8 	ENST00000401931.1|IL8|ENSG00000169429.6|interleukin 8
hg19_v2_chr22_-_30642728_30642754	0.535499	HOXD9	ENST00000403987.3|LIF|ENSG00000128342.4|leukemia inhibitory factor
hg19_v2_chr2_+_143635067_143635211	0.505074	HOXD9	ENST00000264170.4|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr18_+_61554932_61554993	0.479368	HOXD9	ENST00000299502.4|SERPINB2|ENSG00000197632.4|serpin peptidase inhibitor, clade B (ovalbumin), member 2 	ENST00000457692.1|SERPINB2|ENSG00000197632.4|serpin peptidase inhibitor, clade B (ovalbumin), member 2 	ENST00000413956.1|SERPINB2|ENSG00000197632.4|serpin peptidase inhibitor, clade B (ovalbumin), member 2
hg19_v2_chr1_+_152956549_152956566	0.472742	HOXD9	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr5_-_159766528_159766580	0.431489	HOXD9	ENST00000505287.2|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr4_+_71384300_71384314	0.399205	HOXD9	ENST00000504451.1|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr6_-_133055815_133055834	0.391787	HOXD9	ENST00000509351.1|VNN3|ENSG00000093134.9|vanin 3 	ENST00000417437.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000414302.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000423615.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000427187.2|VNN3|ENSG00000093134.9|vanin 3 	ENST00000275223.3|VNN3|ENSG00000093134.9|vanin 3 	ENST00000519686.2|VNN3|ENSG00000093134.9|vanin 3
hg19_v2_chr11_+_93754513_93754538	0.347561	HOXD9	ENST00000315765.9|HEPHL1|ENSG00000181333.11|hephaestin-like 1
hg19_v2_chr5_-_119669160_119669197	0.343618	HOXD9	ENST00000514240.1|CTC-552D5.1|ENSG00000251293.1|CTC-552D5.1
hg19_v2_chr1_+_149239529_149239531	0.339631	HOXD9	ENST00000457216.2|RP11-403I13.4|ENSG00000223779.4|RP11-403I13.4
hg19_v2_chr6_-_47445214_47445308	0.336384	HOXD9	ENST00000604014.1|RP11-385F7.1|ENSG00000270761.1|RP11-385F7.1
hg19_v2_chr5_+_147582348_147582361	0.330241	HOXD9	ENST00000514389.1|SPINK6|ENSG00000178172.2|serine peptidase inhibitor, Kazal type 6
hg19_v2_chr6_+_131958436_131958525	0.300966	HOXD9	ENST00000357639.3|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000543135.1|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000427148.2|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3 	ENST00000358229.5|ENPP3|ENSG00000154269.10|ectonucleotide pyrophosphatase/phosphodiesterase 3
hg19_v2_chr18_+_3466248_3466312	0.269522	HOXD9	ENST00000581029.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000581442.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4	ENST00000579007.1|RP11-838N2.4|ENSG00000266835.1|RP11-838N2.4
hg19_v2_chr18_-_5396271_5396333	0.269337	HOXD9	ENST00000579951.1|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3
hg19_v2_chr4_+_71384257_71384295	0.266073	HOXD9	ENST00000339336.4|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr19_-_5903714_5903809	0.24474	HOXD9	ENST00000586349.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000585661.1|AC024592.12|ENSG00000267740.1|Uncharacterized protein  	ENST00000308961.4|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000592634.1|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000418389.2|NDUFA11|ENSG00000174886.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa 	ENST00000252675.5|FUT5|ENSG00000130383.6|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)
hg19_v2_chr2_+_181988560_181988577	0.236732	HOXD9	ENST00000424170.1|AC104820.2|ENSG00000234663.1|AC104820.2	ENST00000435411.1|AC104820.2|ENSG00000234663.1|AC104820.2
hg19_v2_chr19_-_54618650_54618688	0.231684	HOXD9	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr12_-_7245152_7245203	0.22666	HOXD9	ENST00000542220.2|C1R|ENSG00000159403.11|complement component 1, r subcomponent
hg19_v2_chr13_-_81801115_81801122	0.220831	HOXD9	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr2_+_143635222_143635240	0.214621	HOXD9	ENST00000375773.2|KYNU|ENSG00000115919.10|kynureninase 	ENST00000409512.1|KYNU|ENSG00000115919.10|kynureninase 	ENST00000410015.2|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr8_-_71157595_71157616	0.209979	HOXD9	ENST00000519724.1|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr14_-_38028689_38028726	0.20937	HOXD9	ENST00000553425.1|RP11-356O9.2|ENSG00000259087.1|RP11-356O9.2
hg19_v2_chr1_+_81106951_81107001	0.206984	HOXD9	ENST00000443565.1|RP5-887A10.1|ENSG00000234184.1|RP5-887A10.1
hg19_v2_chr9_+_20927764_20927855	0.195897	HOXD9	ENST00000603044.1|FOCAD|ENSG00000188352.8|focadhesin 	ENST00000604254.1|FOCAD|ENSG00000188352.8|focadhesin
hg19_v2_chr17_+_60447579_60447579	0.193744	HOXD9	ENST00000450662.2|EFCAB3|ENSG00000172421.3|EF-hand calcium binding domain 3
hg19_v2_chr6_+_32812568_32812631	0.190777	HOXD9	ENST00000414474.1|PSMB9|ENSG00000240065.3|proteasome (prosome, macropain) subunit, beta type, 9
hg19_v2_chr11_-_105010320_105010516	0.185506	HOXD9	ENST00000532895.1|CARD18|ENSG00000255501.1|caspase recruitment domain family, member 18 	ENST00000530950.1|CARD18|ENSG00000255501.1|caspase recruitment domain family, member 18
hg19_v2_chr8_+_119294456_119294486	0.183921	HOXD9	ENST00000366457.2|AC023590.1|ENSG00000225885.2|Uncharacterized protein
hg19_v2_chr12_+_122880045_122880153	0.176537	HOXD9	ENST00000539034.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1	ENST00000535976.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1
hg19_v2_chr22_-_41682172_41682255	0.170682	HOXD9	ENST00000356244.3|RANGAP1|ENSG00000100401.15|Ran GTPase activating protein 1
hg19_v2_chr1_+_192127578_192127613	0.166163	HOXD9	ENST00000367460.3|RGS18|ENSG00000150681.5|regulator of G-protein signaling 18
hg19_v2_chr4_-_68749699_68749725	0.16598	HOXD9	ENST00000545541.1|TMPRSS11D|ENSG00000153802.7|transmembrane protease, serine 11D
hg19_v2_chr6_+_31021225_31021277	0.165847	HOXD9	ENST00000565192.1|HCG22|ENSG00000228789.2|HLA complex group 22 	ENST00000562344.1|HCG22|ENSG00000228789.2|HLA complex group 22
hg19_v2_chr2_-_118943930_118943963	0.164294	HOXD9	ENST00000449075.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000414886.1|AC093901.1|ENSG00000226856.1|AC093901.1	ENST00000449819.1|AC093901.1|ENSG00000226856.1|AC093901.1
hg19_v2_chr14_-_24733444_24733470	0.16258	HOXD9	ENST00000560478.1|TGM1|ENSG00000092295.7|transglutaminase 1 	ENST00000560443.1|TGM1|ENSG00000092295.7|transglutaminase 1
hg19_v2_chr15_+_66797627_66797684	0.161881	HOXD9	ENST00000565627.1|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein 	ENST00000564179.1|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein
hg19_v2_chr6_+_15401075_15401095	0.161564	HOXD9	ENST00000541660.1|JARID2|ENSG00000008083.9|jumonji, AT rich interactive domain 2
hg19_v2_chr11_+_89867803_89867906	0.158482	HOXD9	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr15_-_99789736_99789820	0.150093	HOXD9	ENST00000560235.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394132.2|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560860.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558078.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394136.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000262074.4|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000558613.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000394130.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23 	ENST00000560772.1|TTC23|ENSG00000103852.8|tetratricopeptide repeat domain 23
hg19_v2_chr5_+_147582387_147582404	0.146539	HOXD9	ENST00000325630.2|SPINK6|ENSG00000178172.2|serine peptidase inhibitor, Kazal type 6
hg19_v2_chr3_+_111393501_111393538	0.145385	HOXD9	ENST00000393934.3|PLCXD2|ENSG00000240891.2|phosphatidylinositol-specific phospholipase C, X domain containing 2
hg19_v2_chr15_-_39486510_39486531	0.14262	HOXD9	ENST00000560743.1|RP11-265N7.1|ENSG00000259450.1|RP11-265N7.1
hg19_v2_chr12_-_110486348_110486370	0.140409	HOXD9	ENST00000547573.1|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76 	ENST00000546651.2|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76 	ENST00000551185.2|C12orf76|ENSG00000174456.9|chromosome 12 open reading frame 76
hg19_v2_chr12_-_11002063_11002081	0.139888	HOXD9	ENST00000544994.1|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal) 	ENST00000228811.4|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal) 	ENST00000540107.1|PRR4|ENSG00000111215.7|proline rich 4 (lacrimal)
hg19_v2_chr16_+_67927147_67927180	0.138731	HOXD9	ENST00000291041.5|PSKH1|ENSG00000159792.5|protein serine kinase H1
hg19_v2_chr14_+_23709555_23709555	0.138566	HOXD9	ENST00000430154.2|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chr2_+_27282134_27282228	0.13794	HOXD9	ENST00000441931.1|AGBL5|ENSG00000084693.11|ATP/GTP binding protein-like 5
hg19_v2_chr9_-_127358087_127358170	0.135663	HOXD9	ENST00000475178.1|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr2_+_54342533_54342547	0.134276	HOXD9	ENST00000406041.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chrX_+_48620147_48620164	0.133776	HOXD9	ENST00000303227.6|GLOD5|ENSG00000171433.7|glyoxalase domain containing 5
hg19_v2_chr1_+_45140400_45140427	0.131337	HOXD9	ENST00000453711.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr22_-_19466643_19466667	0.128557	HOXD9	ENST00000474226.1|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast)
hg19_v2_chr11_-_128457446_128457461	0.125608	HOXD9	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr14_-_81425828_81425857	0.125339	HOXD9	ENST00000555529.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa 	ENST00000556042.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa 	ENST00000556981.1|CEP128|ENSG00000100629.12|centrosomal protein 128kDa
hg19_v2_chr5_+_158654712_158654727	0.121923	HOXD9	ENST00000520323.1|CTB-11I22.2|ENSG00000253315.1|CTB-11I22.2
hg19_v2_chr6_+_131894284_131894378	0.121081	HOXD9	ENST00000368087.3|ARG1|ENSG00000118520.9|arginase 1 	ENST00000356962.2|ARG1|ENSG00000118520.9|arginase 1
hg19_v2_chr10_+_86184676_86184714	0.120342	HOXD9	ENST00000543283.1|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr9_-_130889990_130890038	0.120146	HOXD9	ENST00000449878.1|PTGES2|ENSG00000148334.10|prostaglandin E synthase 2
hg19_v2_chr5_+_140248518_140248689	0.119612	HOXD9	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr7_+_123469037_123469037	0.111814	HOXD9	ENST00000489978.1|HYAL4|ENSG00000106302.5|hyaluronoglucosaminidase 4
hg19_v2_chr11_+_12115543_12115572	0.111774	HOXD9	ENST00000537344.1|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2 	ENST00000532179.1|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2 	ENST00000526065.1|MICAL2|ENSG00000133816.9|microtubule associated monooxygenase, calponin and LIM domain containing 2
hg19_v2_chr16_+_4545853_4545864	0.111466	HOXD9	ENST00000575129.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000398595.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000414777.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr15_-_66797172_66797221	0.110665	HOXD9	ENST00000569438.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000569696.1|RPL4|ENSG00000174444.10|ribosomal protein L4 	ENST00000307961.6|RPL4|ENSG00000174444.10|ribosomal protein L4
hg19_v2_chr15_-_49913126_49913158	0.110656	HOXD9	ENST00000561064.1|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B 	ENST00000299338.6|FAM227B|ENSG00000166262.11|family with sequence similarity 227, member B
hg19_v2_chr7_-_92777606_92777723	0.108857	HOXD9	ENST00000437805.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000446959.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000439952.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000414791.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000446033.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000411955.1|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like 	ENST00000318238.4|SAMD9L|ENSG00000177409.7|sterile alpha motif domain containing 9-like
hg19_v2_chr6_+_46761118_46761132	0.107895	HOXD9	ENST00000230588.4|MEP1A|ENSG00000112818.5|meprin A, alpha (PABA peptide hydrolase)
hg19_v2_chr1_+_67632083_67632169	0.107507	HOXD9	ENST00000347310.5|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000371002.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr22_-_19466683_19466730	0.102612	HOXD9	ENST00000399523.1|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast) 	ENST00000421968.2|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast) 	ENST00000447868.1|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast)
hg19_v2_chr8_-_25281747_25281779	0.0997845	HOXD9	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr12_-_118628315_118628348	0.0996287	HOXD9	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr18_-_22932080_22932170	0.0989736	HOXD9	ENST00000584787.1|ZNF521|ENSG00000198795.6|zinc finger protein 521 	ENST00000361524.3|ZNF521|ENSG00000198795.6|zinc finger protein 521 	ENST00000538137.2|ZNF521|ENSG00000198795.6|zinc finger protein 521
hg19_v2_chr19_-_54619006_54619055	0.0989062	HOXD9	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr6_+_13272904_13272989	0.0983432	HOXD9	ENST00000379335.3|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1 	ENST00000379329.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr11_+_92085262_92085262	0.0967112	HOXD9	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr19_-_19739321_19739366	0.0948789	HOXD9	ENST00000588461.1|LPAR2|ENSG00000064547.9|lysophosphatidic acid receptor 2
hg19_v2_chrX_-_109590174_109590203	0.0936322	HOXD9	ENST00000372054.1|GNG5P2|ENSG00000133136.3|guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2
hg19_v2_chr4_-_68829226_68829237	0.0935201	HOXD9	ENST00000396188.2|TMPRSS11A|ENSG00000187054.10|transmembrane protease, serine 11A
hg19_v2_chr2_-_128284020_128284091	0.0933237	HOXD9	ENST00000295321.4|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae) 	ENST00000455721.2|IWS1|ENSG00000163166.9|IWS1 homolog (S. cerevisiae)
hg19_v2_chr2_-_163695128_163695158	0.0932605	HOXD9	ENST00000332142.5|KCNH7|ENSG00000184611.7|potassium voltage-gated channel, subfamily H (eag-related), member 7
hg19_v2_chr2_+_33661382_33661445	0.0909537	HOXD9	ENST00000402538.3|RASGRP3|ENSG00000152689.13|RAS guanyl releasing protein 3 (calcium and DAG-regulated)
hg19_v2_chr5_+_142286887_142286918	0.0908455	HOXD9	ENST00000451259.1|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr17_+_61086917_61086921	0.0901348	HOXD9	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr14_+_32963433_32963487	0.0897813	HOXD9	ENST00000554410.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr5_-_65018834_65018863	0.089358	HOXD9	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr11_+_69924639_69924664	0.0891904	HOXD9	ENST00000538023.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000398543.2|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr3_+_10312604_10312604	0.0883613	HOXD9	ENST00000426850.1|TATDN2|ENSG00000157014.6|TatD DNase domain containing 2
hg19_v2_chr17_+_68071458_68071481	0.0882279	HOXD9	ENST00000589377.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr12_+_9980069_9980087	0.0880143	HOXD9	ENST00000354855.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000324214.4|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1 	ENST00000279544.3|KLRF1|ENSG00000150045.7|killer cell lectin-like receptor subfamily F, member 1
hg19_v2_chrX_+_36053908_36053908	0.0876205	HOXD9	ENST00000378660.2|CHDC2|ENSG00000176034.8|calponin homology domain containing 2
hg19_v2_chr6_-_32634425_32634479	0.0856708	HOXD9	ENST00000399082.3|HLA-DQB1|ENSG00000179344.12|major histocompatibility complex, class II, DQ beta 1 	ENST00000399079.3|HLA-DQB1|ENSG00000179344.12|major histocompatibility complex, class II, DQ beta 1 	ENST00000374943.4|HLA-DQB1|ENSG00000179344.12|major histocompatibility complex, class II, DQ beta 1 	ENST00000434651.2|HLA-DQB1|ENSG00000179344.12|major histocompatibility complex, class II, DQ beta 1
hg19_v2_chr1_-_21377383_21377395	0.0850469	HOXD9	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr12_-_9268707_9268758	0.0847559	HOXD9	ENST00000318602.7|A2M|ENSG00000175899.10|alpha-2-macroglobulin
hg19_v2_chr22_-_19466732_19466743	0.0831054	HOXD9	ENST00000263202.10|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast) 	ENST00000360834.4|UFD1L|ENSG00000070010.14|ubiquitin fusion degradation 1 like (yeast)
hg19_v2_chr8_-_102181718_102181857	0.0824181	HOXD9	ENST00000565617.1|KB-1460A1.5|ENSG00000261087.1|KB-1460A1.5
hg19_v2_chr14_+_23654525_23654545	0.0808701	HOXD9	ENST00000399910.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164 	ENST00000492621.1|C14orf164|ENSG00000215277.4|chromosome 14 open reading frame 164
hg19_v2_chr17_+_68071389_68071426	0.0804138	HOXD9	ENST00000283936.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392671.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr4_-_68829144_68829224	0.0800296	HOXD9	ENST00000508048.1|TMPRSS11A|ENSG00000187054.10|transmembrane protease, serine 11A
hg19_v2_chr5_+_61874562_61874685	0.0799931	HOXD9	ENST00000334994.5|LRRC70|ENSG00000186105.7|leucine rich repeat containing 70 	ENST00000409534.1|IPO11|ENSG00000086200.12|importin 11
hg19_v2_chr8_-_80942061_80942086	0.0795679	HOXD9	ENST00000519386.1|MRPS28|ENSG00000147586.5|mitochondrial ribosomal protein S28
hg19_v2_chr7_+_120629653_120629833	0.0785828	HOXD9	ENST00000450913.2|CPED1|ENSG00000106034.13|cadherin-like and PC-esterase domain containing 1 	ENST00000340646.5|CPED1|ENSG00000106034.13|cadherin-like and PC-esterase domain containing 1
hg19_v2_chr11_-_78052923_78052949	0.0785608	HOXD9	ENST00000340149.2|GAB2|ENSG00000033327.8|GRB2-associated binding protein 2
hg19_v2_chr12_+_26348246_26348310	0.0781529	HOXD9	ENST00000422622.2|SSPN|ENSG00000123096.7|sarcospan
hg19_v2_chr11_+_63606373_63606418	0.0771782	HOXD9	ENST00000402010.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000315032.8|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377809.4|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000413835.2|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2 	ENST00000377810.3|MARK2|ENSG00000072518.16|MAP/microtubule affinity-regulating kinase 2
hg19_v2_chr13_+_76413852_76413884	0.0766116	HOXD9	ENST00000533809.2|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr1_+_181057638_181057692	0.0748642	HOXD9	ENST00000367577.4|IER5|ENSG00000162783.8|immediate early response 5
hg19_v2_chr2_-_202562774_202562794	0.0722186	HOXD9	ENST00000396886.3|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENST00000409143.1|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
hg19_v2_chr6_+_53948328_53948338	0.0720959	HOXD9	ENST00000370876.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr19_-_56826157_56826294	0.0716665	HOXD9	ENST00000592509.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000592679.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000588442.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000593106.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000587492.1|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A 	ENST00000254165.3|ZSCAN5A|ENSG00000131848.5|zinc finger and SCAN domain containing 5A
hg19_v2_chr11_-_102401469_102401488	0.0704633	HOXD9	ENST00000260227.4|MMP7|ENSG00000137673.4|matrix metallopeptidase 7 (matrilysin, uterine)
hg19_v2_chr4_-_84035868_84035897	0.0674133	HOXD9	ENST00000426923.2|PLAC8|ENSG00000145287.6|placenta-specific 8 	ENST00000509973.1|PLAC8|ENSG00000145287.6|placenta-specific 8
hg19_v2_chr2_+_1418154_1418194	0.0658187	HOXD9	ENST00000423320.1|TPO|ENSG00000115705.16|thyroid peroxidase 	ENST00000382198.1|TPO|ENSG00000115705.16|thyroid peroxidase
hg19_v2_chr12_-_91546926_91546972	0.0645733	HOXD9	ENST00000550758.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr10_-_28623368_28623415	0.0637143	HOXD9	ENST00000441595.2|MPP7|ENSG00000150054.14|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
hg19_v2_chr1_+_16083098_16083119	0.0632735	HOXD9	ENST00000496928.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000508310.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr1_+_197237352_197237543	0.062937	HOXD9	ENST00000538660.1|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367400.3|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila) 	ENST00000367399.2|CRB1|ENSG00000134376.10|crumbs homolog 1 (Drosophila)
hg19_v2_chr8_-_66701319_66701330	0.0623909	HOXD9	ENST00000379419.4|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_-_202562716_202562727	0.0613229	HOXD9	ENST00000428900.2|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
hg19_v2_chr1_-_238108575_238108575	0.0608344	HOXD9	ENST00000604646.1|MTRNR2L11|ENSG00000270188.1|MT-RNR2-like 11 (pseudogene)
hg19_v2_chr12_+_58176525_58176601	0.0607035	HOXD9	ENST00000543727.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000540550.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000323833.8|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000350762.5|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000550559.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000548851.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000434359.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial 	ENST00000457189.1|TSFM|ENSG00000123297.12|Ts translation elongation factor, mitochondrial
hg19_v2_chr17_-_10452929_10452946	0.0605582	HOXD9	ENST00000532183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000397183.2|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult 	ENST00000420805.1|MYH2|ENSG00000125414.14|myosin, heavy chain 2, skeletal muscle, adult
hg19_v2_chr4_+_71108300_71108323	0.0587196	HOXD9	ENST00000304954.3|CSN3|ENSG00000171209.3|casein kappa
hg19_v2_chr4_-_144826682_144826716	0.0570396	HOXD9	ENST00000358615.4|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group) 	ENST00000437468.2|GYPE|ENSG00000197465.9|glycophorin E (MNS blood group)
hg19_v2_chr19_+_54619125_54619189	0.0568541	HOXD9	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr17_-_54893250_54893278	0.0566449	HOXD9	ENST00000397862.2|C17orf67|ENSG00000214226.4|chromosome 17 open reading frame 67
hg19_v2_chr3_+_102153859_102153877	0.0564079	HOXD9	ENST00000306176.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1 	ENST00000466937.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr5_-_147211226_147211349	0.0550282	HOXD9	ENST00000296695.5|SPINK1|ENSG00000164266.6|serine peptidase inhibitor, Kazal type 1
hg19_v2_chr14_+_92789498_92789537	0.0545835	HOXD9	ENST00000531433.1|SLC24A4|ENSG00000140090.13|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
hg19_v2_chr12_-_95510743_95510753	0.0543256	HOXD9	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr8_+_7801144_7801144	0.0542986	HOXD9	ENST00000443676.1|ZNF705B|ENSG00000215356.3|zinc finger protein 705B
hg19_v2_chr7_-_92855762_92855837	0.0539958	HOXD9	ENST00000453812.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2 	ENST00000394468.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2
hg19_v2_chr3_+_158787041_158787074	0.0535371	HOXD9	ENST00000471575.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000476809.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough 	ENST00000485419.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chrX_-_68385354_68385369	0.0530324	HOXD9	ENST00000361478.1|PJA1|ENSG00000181191.11|praja ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chrX_-_77150911_77150960	0.0525476	HOXD9	ENST00000373336.3|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr2_+_185463093_185463181	0.0523623	HOXD9	ENST00000302277.6|ZNF804A|ENSG00000170396.6|zinc finger protein 804A
hg19_v2_chr17_-_29645836_29645853	0.0520354	HOXD9	ENST00000578584.1|CTD-2370N5.3|ENSG00000265118.1|CTD-2370N5.3
hg19_v2_chr10_+_104614008_104614042	0.0519547	HOXD9	ENST00000369883.3|C10orf32|ENSG00000166275.11|chromosome 10 open reading frame 32
hg19_v2_chr7_+_18536090_18536130	0.0516239	HOXD9	ENST00000441986.1|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr9_-_138391692_138391741	0.0515366	HOXD9	ENST00000429260.2|C9orf116|ENSG00000160345.8|chromosome 9 open reading frame 116
hg19_v2_chr2_+_114647504_114647557	0.0514999	HOXD9	ENST00000263238.2|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr3_-_139258521_139258671	0.0507465	HOXD9	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr1_+_45140360_45140399	0.0506277	HOXD9	ENST00000418644.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000458657.2|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000441519.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000535358.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000445071.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr2_-_228244013_228244027	0.0490001	HOXD9	ENST00000304568.3|TM4SF20|ENSG00000168955.3|transmembrane 4 L six family member 20
hg19_v2_chr4_-_84035905_84035955	0.0485784	HOXD9	ENST00000311507.4|PLAC8|ENSG00000145287.6|placenta-specific 8
hg19_v2_chr5_+_140180635_140180783	0.0484074	HOXD9	ENST00000522353.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3 	ENST00000532566.2|PCDHA3|ENSG00000255408.2|protocadherin alpha 3
hg19_v2_chr4_-_76944621_76944671	0.0483898	HOXD9	ENST00000306602.1|CXCL10|ENSG00000169245.4|chemokine (C-X-C motif) ligand 10
hg19_v2_chr15_+_66797455_66797483	0.0477789	HOXD9	ENST00000446801.2|ZWILCH|ENSG00000174442.7|zwilch kinetochore protein
hg19_v2_chr17_-_39646116_39646164	0.0469411	HOXD9	ENST00000328119.6|KRT36|ENSG00000126337.9|keratin 36
hg19_v2_chr1_-_213020991_213020991	0.046753	HOXD9	ENST00000332912.3|C1orf227|ENSG00000185523.6|chromosome 1 open reading frame 227
hg19_v2_chr1_-_165414414_165414433	0.0463891	HOXD9	ENST00000359842.5|RXRG|ENSG00000143171.8|retinoid X receptor, gamma
hg19_v2_chr4_-_68749745_68749756	0.0455887	HOXD9	ENST00000283916.6|TMPRSS11D|ENSG00000153802.7|transmembrane protease, serine 11D
hg19_v2_chr22_+_19118321_19118321	0.0455208	HOXD9	ENST00000399635.2|TSSK2|ENSG00000206203.3|testis-specific serine kinase 2
hg19_v2_chr3_+_2933893_2933921	0.045095	HOXD9	ENST00000397459.2|CNTN4|ENSG00000144619.10|contactin 4
hg19_v2_chr13_-_47012325_47012366	0.0446811	HOXD9	ENST00000409879.2|KIAA0226L|ENSG00000102445.14|KIAA0226-like
hg19_v2_chr19_-_9237626_9237626	0.0445342	HOXD9	ENST00000305444.2|OR7G3|ENSG00000170920.2|olfactory receptor, family 7, subfamily G, member 3
hg19_v2_chr1_+_207262881_207262901	0.0445041	HOXD9	ENST00000451804.2|C4BPB|ENSG00000123843.8|complement component 4 binding protein, beta
hg19_v2_chr15_-_45493289_45493373	0.043717	HOXD9	ENST00000561278.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F 	ENST00000290894.8|SHF|ENSG00000138606.15|Src homology 2 domain containing F
hg19_v2_chr7_+_90012986_90013035	0.0404728	HOXD9	ENST00000416322.1|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr11_+_34999328_34999334	0.0403295	HOXD9	ENST00000526309.1|PDHX|ENSG00000110435.7|pyruvate dehydrogenase complex, component X
hg19_v2_chr7_-_121944491_121944705	0.0402558	HOXD9	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr11_-_104827425_104827425	0.0400355	HOXD9	ENST00000393150.3|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr20_-_20693131_20693268	0.0397061	HOXD9	ENST00000202677.7|RALGAPA2|ENSG00000188559.9|Ral GTPase activating protein, alpha subunit 2 (catalytic)
hg19_v2_chr1_+_15668240_15668263	0.0395334	HOXD9	ENST00000444385.1|FHAD1|ENSG00000142621.15|forkhead-associated (FHA) phosphopeptide binding domain 1
hg19_v2_chr17_-_73389737_73389765	0.0393679	HOXD9	ENST00000392563.1|GRB2|ENSG00000177885.9|growth factor receptor-bound protein 2
hg19_v2_chr5_+_140588269_140588299	0.0390991	HOXD9	ENST00000541609.1|PCDHB12|ENSG00000120328.4|protocadherin beta 12 	ENST00000239450.2|PCDHB12|ENSG00000120328.4|protocadherin beta 12
hg19_v2_chr4_+_15341442_15341589	0.0382105	HOXD9	ENST00000397700.2|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000295297.4|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr6_-_31632962_31632997	0.0381205	HOXD9	ENST00000456540.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1 	ENST00000445768.1|GPANK1|ENSG00000204438.6|G patch domain and ankyrin repeats 1
hg19_v2_chr18_+_616672_616681	0.0380998	HOXD9	ENST00000338387.7|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr15_-_55562582_55562617	0.0374792	HOXD9	ENST00000396307.2|RAB27A|ENSG00000069974.11|RAB27A, member RAS oncogene family
hg19_v2_chr4_+_69962185_69962202	0.0373284	HOXD9	ENST00000305231.7|UGT2B7|ENSG00000171234.9|UDP glucuronosyltransferase 2 family, polypeptide B7
hg19_v2_chr17_-_38020379_38020390	0.0371811	HOXD9	ENST00000351680.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000346243.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000350532.3|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000467757.1|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos) 	ENST00000439016.2|IKZF3|ENSG00000161405.12|IKAROS family zinc finger 3 (Aiolos)
hg19_v2_chr9_+_124103625_124103625	0.0370673	HOXD9	ENST00000594963.1|AL161784.1|ENSG00000267987.1|Uncharacterized protein
hg19_v2_chr12_-_7656357_7656489	0.0366049	HOXD9	ENST00000396620.3|CD163|ENSG00000177575.8|CD163 molecule 	ENST00000432237.2|CD163|ENSG00000177575.8|CD163 molecule 	ENST00000359156.4|CD163|ENSG00000177575.8|CD163 molecule
hg19_v2_chr1_+_197881592_197881635	0.0365254	HOXD9	ENST00000367391.1|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367390.3|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr2_+_25015968_25016029	0.0361045	HOXD9	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr7_-_36764004_36764059	0.0360215	HOXD9	ENST00000431169.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr9_-_28670283_28670283	0.0358587	HOXD9	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chr6_+_72926145_72926245	0.0341285	HOXD9	ENST00000425662.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000453976.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr2_+_145425573_145425654	0.0332399	HOXD9	ENST00000600064.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597670.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000414256.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000599187.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000451774.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000599072.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000596589.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000597893.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr1_-_111061797_111061797	0.033116	HOXD9	ENST00000369771.2|KCNA10|ENSG00000143105.5|potassium voltage-gated channel, shaker-related subfamily, member 10
hg19_v2_chr2_-_176046391_176046445	0.0326228	HOXD9	ENST00000392541.3|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) 	ENST00000409194.1|ATP5G3|ENSG00000154518.5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
hg19_v2_chr4_+_118955500_118955612	0.0322586	HOXD9	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr6_+_73076432_73076455	0.0320308	HOXD9	ENST00000414192.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr4_-_150736962_150736980	0.0316198	HOXD9	ENST00000502345.1|RP11-526A4.1|ENSG00000234828.3|RP11-526A4.1	ENST00000510975.1|RP11-526A4.1|ENSG00000234828.3|RP11-526A4.1	ENST00000511993.1|RP11-526A4.1|ENSG00000234828.3|RP11-526A4.1
hg19_v2_chr3_-_112564797_112564797	0.0315843	HOXD9	ENST00000398214.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like 	ENST00000448932.1|CD200R1L|ENSG00000206531.6|CD200 receptor 1-like
hg19_v2_chr2_+_36923901_36923928	0.0313459	HOXD9	ENST00000457137.2|VIT|ENSG00000205221.8|vitrin
hg19_v2_chr6_-_49712123_49712134	0.0312596	HOXD9	ENST00000263045.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chrX_+_135730297_135730352	0.0311729	HOXD9	ENST00000370629.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chrX_+_135730373_135730399	0.0311424	HOXD9	ENST00000370628.2|CD40LG|ENSG00000102245.3|CD40 ligand
hg19_v2_chr7_-_107880508_107880522	0.0305605	HOXD9	ENST00000425651.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr9_+_96846740_96846767	0.0300679	HOXD9	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr2_-_213293960_213293978	0.0296574	HOXD9	ENST00000435846.1|ERBB4|ENSG00000178568.9|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4
hg19_v2_chr4_-_76928641_76928668	0.0294657	HOXD9	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr1_+_38022513_38022571	0.0285768	HOXD9	ENST00000296218.7|DNALI1|ENSG00000163879.9|dynein, axonemal, light intermediate chain 1
hg19_v2_chr3_-_157221380_157221415	0.028454	HOXD9	ENST00000468233.1|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr15_-_54025300_54025380	0.0281667	HOXD9	ENST00000559418.1|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr1_-_39339777_39339777	0.0279785	HOXD9	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr9_-_215744_215893	0.0273659	HOXD9	ENST00000382387.2|C9orf66|ENSG00000183784.5|chromosome 9 open reading frame 66
hg19_v2_chr17_+_7155819_7155942	0.0270319	HOXD9	ENST00000570322.1|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5 	ENST00000576496.1|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5 	ENST00000574841.2|ELP5|ENSG00000170291.10|elongator acetyltransferase complex subunit 5
hg19_v2_chr6_-_39399087_39399150	0.0266058	HOXD9	ENST00000229913.5|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000541946.1|KIF6|ENSG00000164627.13|kinesin family member 6 	ENST00000394362.1|KIF6|ENSG00000164627.13|kinesin family member 6
hg19_v2_chr5_+_140207536_140207650	0.0264726	HOXD9	ENST00000529310.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6 	ENST00000527624.1|PCDHA6|ENSG00000081842.13|protocadherin alpha 6
hg19_v2_chr2_-_238305397_238305460	0.0264355	HOXD9	ENST00000409809.1|COL6A3|ENSG00000163359.11|collagen, type VI, alpha 3
hg19_v2_chr4_+_88529681_88529681	0.0260241	HOXD9	ENST00000399271.1|DSPP|ENSG00000152591.8|dentin sialophosphoprotein
hg19_v2_chr8_+_86089460_86089483	0.0254805	HOXD9	ENST00000418930.2|E2F5|ENSG00000133740.6|E2F transcription factor 5, p130-binding
hg19_v2_chr14_+_94385235_94385258	0.0249391	HOXD9	ENST00000557719.1|FAM181A|ENSG00000140067.6|family with sequence similarity 181, member A 	ENST00000267594.5|FAM181A|ENSG00000140067.6|family with sequence similarity 181, member A
hg19_v2_chr2_+_36923830_36923874	0.024242	HOXD9	ENST00000379242.3|VIT|ENSG00000205221.8|vitrin 	ENST00000389975.3|VIT|ENSG00000205221.8|vitrin
hg19_v2_chr2_+_210518057_210518117	0.0238466	HOXD9	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr1_-_26231589_26231635	0.0237121	HOXD9	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr10_-_29084886_29085042	0.0234592	HOXD9	ENST00000608061.1|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837 	ENST00000443246.2|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837 	ENST00000446012.1|LINC00837|ENSG00000235824.3|long intergenic non-protein coding RNA 837
hg19_v2_chr22_-_36236265_36236481	0.0233775	HOXD9	ENST00000414461.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000416721.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000449924.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000262829.7|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENST00000397305.3|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr12_-_90049828_90049847	0.023301	HOXD9	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr3_+_186435065_186435126	0.0231321	HOXD9	ENST00000287611.2|KNG1|ENSG00000113889.7|kininogen 1 	ENST00000265023.4|KNG1|ENSG00000113889.7|kininogen 1
hg19_v2_chr1_+_172745006_172745045	0.0228049	HOXD9	ENST00000432694.2|RP1-15D23.2|ENSG00000224228.2|RP1-15D23.2
hg19_v2_chr4_+_175839551_175839567	0.0225377	HOXD9	ENST00000404450.4|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000514159.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr8_-_86253888_86253944	0.022481	HOXD9	ENST00000522389.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000432364.2|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517618.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr18_-_70532906_70532934	0.02238	HOXD9	ENST00000299430.2|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1 	ENST00000397929.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr3_-_157221128_157221216	0.0221401	HOXD9	ENST00000392833.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1 	ENST00000362010.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr5_+_135496675_135496725	0.0217986	HOXD9	ENST00000507637.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr4_+_37455536_37455610	0.0215424	HOXD9	ENST00000381980.4|C4orf19|ENSG00000154274.10|chromosome 4 open reading frame 19 	ENST00000508175.1|C4orf19|ENSG00000154274.10|chromosome 4 open reading frame 19
hg19_v2_chr1_+_44870866_44870960	0.0205201	HOXD9	ENST00000355387.2|RNF220|ENSG00000187147.13|ring finger protein 220 	ENST00000361799.2|RNF220|ENSG00000187147.13|ring finger protein 220
hg19_v2_chr18_+_21452804_21452910	0.0198177	HOXD9	ENST00000269217.6|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr18_+_616711_616720	0.0197871	HOXD9	ENST00000579494.1|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr2_-_158182322_158182358	0.0195322	HOXD9	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr1_+_16083154_16083168	0.0189772	HOXD9	ENST00000375771.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr2_+_143886877_143886888	0.0187312	HOXD9	ENST00000295095.6|ARHGAP15|ENSG00000075884.8|Rho GTPase activating protein 15
hg19_v2_chr10_-_105845536_105845581	0.0185683	HOXD9	ENST00000393211.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr12_-_30887948_30887997	0.0185052	HOXD9	ENST00000433722.2|CAPRIN2|ENSG00000110888.13|caprin family member 2
hg19_v2_chr17_-_71223839_71223887	0.0179377	HOXD9	ENST00000579872.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000580032.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A
hg19_v2_chr2_+_28824786_28824791	0.0178253	HOXD9	ENST00000541605.1|PLB1|ENSG00000163803.8|phospholipase B1
hg19_v2_chr17_+_75181292_75181298	0.0173452	HOXD9	ENST00000431431.2|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae)
hg19_v2_chr4_+_69313145_69313167	0.0172549	HOXD9	ENST00000305363.4|TMPRSS11E|ENSG00000087128.5|transmembrane protease, serine 11E
hg19_v2_chr5_+_177435986_177435986	0.0170801	HOXD9	ENST00000398106.2|FAM153C|ENSG00000204677.6|family with sequence similarity 153, member C
hg19_v2_chr3_+_62936098_62936146	0.0164314	HOXD9	ENST00000475886.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465684.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000465262.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698 	ENST00000468072.1|LINC00698|ENSG00000244342.1|long intergenic non-protein coding RNA 698
hg19_v2_chr7_+_16793160_16793160	0.0157582	HOXD9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr6_+_118869452_118869475	0.0156225	HOXD9	ENST00000357525.5|PLN|ENSG00000198523.5|phospholamban
hg19_v2_chr3_+_158787098_158787117	0.0154781	HOXD9	ENST00000397832.2|IQCJ|ENSG00000214216.6|IQ motif containing J 	ENST00000451172.1|IQCJ|ENSG00000214216.6|IQ motif containing J 	ENST00000482126.1|IQCJ|ENSG00000214216.6|IQ motif containing J
hg19_v2_chr2_+_210517895_210518021	0.0154223	HOXD9	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr12_-_10607084_10607284	0.0150286	HOXD9	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr20_-_39928756_39928766	0.014964	HOXD9	ENST00000432768.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chrX_-_10645724_10645735	0.0147987	HOXD9	ENST00000413894.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr12_-_15104040_15104114	0.0139534	HOXD9	ENST00000541644.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta 	ENST00000545895.1|ARHGDIB|ENSG00000111348.4|Rho GDP dissociation inhibitor (GDI) beta
hg19_v2_chr4_-_164534657_164534701	0.0138682	HOXD9	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr8_-_10512569_10512612	0.0137706	HOXD9	ENST00000382483.3|RP1L1|ENSG00000183638.5|retinitis pigmentosa 1-like 1
hg19_v2_chr12_+_19358192_19358212	0.0136921	HOXD9	ENST00000538305.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr17_+_61151306_61151320	0.0136808	HOXD9	ENST00000580068.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000580466.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr6_-_74231444_74231623	0.0136082	HOXD9	ENST00000331523.2|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1 	ENST00000356303.2|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1
hg19_v2_chr17_+_54230819_54230871	0.0135309	HOXD9	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr21_-_31588365_31588398	0.0130817	HOXD9	ENST00000399899.1|CLDN8|ENSG00000156284.4|claudin 8
hg19_v2_chr17_+_9479944_9479965	0.0127495	HOXD9	ENST00000396219.3|WDR16|ENSG00000166596.10|WD repeat domain 16 	ENST00000352665.5|WDR16|ENSG00000166596.10|WD repeat domain 16
hg19_v2_chr6_+_4087664_4087683	0.0119515	HOXD9	ENST00000430835.2|C6orf201|ENSG00000185689.11|chromosome 6 open reading frame 201
hg19_v2_chr15_-_90222642_90222658	0.0119487	HOXD9	ENST00000430628.2|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr2_-_175712270_175712316	0.0113487	HOXD9	ENST00000295497.7|CHN1|ENSG00000128656.9|chimerin 1 	ENST00000444394.1|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr19_+_45843994_45844015	0.0110359	HOXD9	ENST00000391946.2|KLC3|ENSG00000104892.12|kinesin light chain 3
hg19_v2_chrX_+_135388147_135388181	0.0109923	HOXD9	ENST00000394141.1|GPR112|ENSG00000156920.6|G protein-coupled receptor 112
hg19_v2_chr1_-_9953295_9953320	0.0107763	HOXD9	ENST00000377258.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr1_+_50459990_50459990	0.00912611	HOXD9	ENST00000448346.1|AL645730.2|ENSG00000227839.1|AL645730.2
hg19_v2_chr10_+_115511213_115511272	0.00890214	HOXD9	ENST00000361048.1|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr2_+_145780739_145780759	0.00839584	HOXD9	ENST00000597173.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000602108.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding) 	ENST00000420472.1|TEX41|ENSG00000226674.4|testis expressed 41 (non-protein coding)
hg19_v2_chr2_+_109237717_109237729	0.00793744	HOXD9	ENST00000409441.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr3_-_116163830_116163855	0.0078812	HOXD9	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr2_-_228497888_228498036	0.00769335	HOXD9	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr15_+_52155001_52155035	0.00697972	HOXD9	ENST00000544199.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr4_+_71019903_71019914	0.00685436	HOXD9	ENST00000344526.5|C4orf40|ENSG00000187533.9|chromosome 4 open reading frame 40
hg19_v2_chr4_-_88244010_88244045	0.00627599	HOXD9	ENST00000302219.6|HSD17B13|ENSG00000170509.7|hydroxysteroid (17-beta) dehydrogenase 13
hg19_v2_chr3_+_158991025_158991083	0.00618544	HOXD9	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr5_-_177207634_177207677	0.00536247	HOXD9	ENST00000513554.1|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A 	ENST00000440605.3|FAM153A|ENSG00000170074.15|family with sequence similarity 153, member A
hg19_v2_chrX_+_71401570_71401644	0.00532344	HOXD9	ENST00000496835.2|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) 	ENST00000446576.1|PIN4|ENSG00000102309.8|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
hg19_v2_chr12_-_118628350_118628371	0.00497625	HOXD9	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr4_-_100065419_100065434	0.00495767	HOXD9	ENST00000504125.1|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENST00000505590.1|ADH4|ENSG00000198099.4|alcohol dehydrogenase 4 (class II), pi polypeptide
hg19_v2_chr4_-_88244049_88244073	0.00428845	HOXD9	ENST00000328546.4|HSD17B13|ENSG00000170509.7|hydroxysteroid (17-beta) dehydrogenase 13
hg19_v2_chr2_-_166060382_166060411	0.00424726	HOXD9	ENST00000409101.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr12_-_122879969_122879982	0.00398179	HOXD9	ENST00000540304.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr5_+_121465234_121465263	0.00332014	HOXD9	ENST00000504912.1|ZNF474|ENSG00000164185.4|zinc finger protein 474 	ENST00000505843.1|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr15_+_58430567_58430589	0.00304812	HOXD9	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr2_-_231989808_231989832	0.00291437	HOXD9	ENST00000258400.3|HTR2B|ENSG00000135914.5|5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled
hg19_v2_chr3_+_169539710_169539710	0.00251028	HOXD9	ENST00000340806.6|LRRIQ4|ENSG00000188306.6|leucine-rich repeats and IQ motif containing 4
hg19_v2_chr14_-_68000442_68000456	0.00238787	HOXD9	ENST00000554278.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr4_-_39640513_39640529	0.00222342	HOXD9	ENST00000511809.1|SMIM14|ENSG00000163683.7|small integral membrane protein 14 	ENST00000505729.1|SMIM14|ENSG00000163683.7|small integral membrane protein 14
hg19_v2_chr4_-_144940477_144940541	0.00180936	HOXD9	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr3_+_145782358_145782358	0.00175772	HOXD9	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chr17_+_66521936_66522026	0.00151381	HOXD9	ENST00000592800.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr9_-_123812542_123812560	0.00128133	HOXD9	ENST00000223642.1|C5|ENSG00000106804.6|complement component 5
hg19_v2_chr13_-_33924755_33924822	0.000923415	HOXD9	ENST00000439831.1|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13 	ENST00000567873.1|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr15_-_90222610_90222634	0.000604162	HOXD9	ENST00000300055.5|PLIN1|ENSG00000166819.7|perilipin 1
hg19_v2_chr1_+_109255279_109255279	0.000264619	HOXD9	ENST00000370017.3|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr7_+_138943265_138943265	0.00017113	HOXD9	ENST00000483726.1|UBN2|ENSG00000157741.10|ubinuclein 2
