hg19_v2_chr5_-_42811986_42812001	0.667667	HNF4A	ENST00000511224.1|SEPP1|ENSG00000250722.1|selenoprotein P, plasma, 1 	ENST00000507920.1|SEPP1|ENSG00000250722.1|selenoprotein P, plasma, 1 	ENST00000510965.1|SEPP1|ENSG00000250722.1|selenoprotein P, plasma, 1
hg19_v2_chr2_-_222436988_222437031	0.591027	HNF4A	ENST00000409854.1|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000281821.2|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000392071.4|EPHA4|ENSG00000116106.7|EPH receptor A4 	ENST00000443796.1|EPHA4|ENSG00000116106.7|EPH receptor A4
hg19_v2_chr5_-_42812143_42812181	0.555546	HNF4A	ENST00000514985.1|SEPP1|ENSG00000250722.1|selenoprotein P, plasma, 1
hg19_v2_chr1_-_177939348_177939395	0.452393	HNF4A	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr19_+_45116921_45116940	0.413216	HNF4A	ENST00000402988.1|IGSF23|ENSG00000216588.4|immunoglobulin superfamily, member 23
hg19_v2_chr4_+_113152978_113152989	0.408846	HNF4A	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr1_+_23695680_23695743	0.402134	HNF4A	ENST00000454117.1|C1orf213|ENSG00000249087.3|chromosome 1 open reading frame 213 	ENST00000335648.3|C1orf213|ENSG00000249087.3|chromosome 1 open reading frame 213 	ENST00000518821.1|C1orf213|ENSG00000249087.3|chromosome 1 open reading frame 213 	ENST00000437367.2|C1orf213|ENSG00000249087.3|chromosome 1 open reading frame 213
hg19_v2_chr1_-_43751230_43751274	0.389747	HNF4A	ENST00000523677.1|C1orf210|ENSG00000253313.1|chromosome 1 open reading frame 210
hg19_v2_chr14_-_76447494_76447534	0.381067	HNF4A	ENST00000238682.3|TGFB3|ENSG00000119699.3|transforming growth factor, beta 3
hg19_v2_chr2_-_222437049_222437078	0.34636	HNF4A	ENST00000541600.1|EPHA4|ENSG00000116106.7|EPH receptor A4
hg19_v2_chr3_-_158390282_158390521	0.328881	HNF4A	ENST00000264265.3|LXN|ENSG00000079257.3|latexin
hg19_v2_chr17_+_73606766_73606791	0.328708	HNF4A	ENST00000578462.1|MYO15B|ENSG00000266714.2|myosin XVB pseudogene
hg19_v2_chr2_+_97454321_97454332	0.321647	HNF4A	ENST00000540067.1|CNNM4|ENSG00000158158.7|cyclin M4
hg19_v2_chr11_-_73720276_73720286	0.316308	HNF4A	ENST00000348534.4|UCP3|ENSG00000175564.8|uncoupling protein 3 (mitochondrial, proton carrier)
hg19_v2_chr17_+_4692230_4692265	0.305289	HNF4A	ENST00000331264.7|GLTPD2|ENSG00000182327.7|glycolipid transfer protein domain containing 2
hg19_v2_chr11_+_1856034_1856147	0.295147	HNF4A	ENST00000341958.3|SYT8|ENSG00000149043.12|synaptotagmin VIII
hg19_v2_chr12_-_95010147_95010196	0.288653	HNF4A	ENST00000548918.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr2_-_74648702_74648782	0.274258	HNF4A	ENST00000518863.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr6_+_31950150_31950150	0.26526	HNF4A	ENST00000537134.1|C4A|ENSG00000244731.3|complement component 4A (Rodgers blood group)
hg19_v2_chr2_+_14772810_14772853	0.244853	HNF4A	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr1_+_78511586_78511688	0.243047	HNF4A	ENST00000370759.3|GIPC2|ENSG00000137960.5|GIPC PDZ domain containing family, member 2
hg19_v2_chr1_+_94883991_94884011	0.242561	HNF4A	ENST00000370214.4|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3
hg19_v2_chr11_+_27076764_27076822	0.227364	HNF4A	ENST00000525090.1|BBOX1|ENSG00000129151.4|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
hg19_v2_chr1_+_6508100_6508152	0.226945	HNF4A	ENST00000461727.1|ESPN|ENSG00000187017.10|espin
hg19_v2_chr1_+_100435315_100435345	0.220511	HNF4A	ENST00000370155.3|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 	ENST00000465289.1|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chr2_-_74645669_74645765	0.213004	HNF4A	ENST00000518401.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr11_+_1855645_1855820	0.212937	HNF4A	ENST00000381968.3|SYT8|ENSG00000149043.12|synaptotagmin VIII 	ENST00000381978.3|SYT8|ENSG00000149043.12|synaptotagmin VIII
hg19_v2_chr15_-_100273544_100273649	0.206987	HNF4A	ENST00000409796.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000545021.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000344791.2|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000332728.4|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000450512.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4
hg19_v2_chr12_+_121163538_121163599	0.206672	HNF4A	ENST00000242592.4|ACADS|ENSG00000122971.4|acyl-CoA dehydrogenase, C-2 to C-3 short chain
hg19_v2_chr1_-_161207875_161207901	0.204342	HNF4A	ENST00000512372.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000437437.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000442691.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000412844.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000428574.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000505005.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000508740.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000508387.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000504010.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000511676.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000502985.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367981.3|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000515621.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000511944.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000511748.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367984.4|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367985.3|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr1_+_94883931_94883980	0.200005	HNF4A	ENST00000394233.2|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3 	ENST00000454898.2|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3 	ENST00000536817.1|ABCD3|ENSG00000117528.7|ATP-binding cassette, sub-family D (ALD), member 3
hg19_v2_chr10_-_116444371_116444414	0.197846	HNF4A	ENST00000533213.2|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369252.4|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr17_+_1646130_1646320	0.195806	HNF4A	ENST00000453066.1|SERPINF2|ENSG00000167711.9|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 	ENST00000324015.3|SERPINF2|ENSG00000167711.9|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 	ENST00000450523.2|SERPINF2|ENSG00000167711.9|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 	ENST00000453723.1|SERPINF2|ENSG00000167711.9|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2 	ENST00000382061.4|SERPINF2|ENSG00000167711.9|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2
hg19_v2_chr1_+_100435535_100435597	0.186795	HNF4A	ENST00000427993.2|SLC35A3|ENSG00000117620.8|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
hg19_v2_chr1_-_161208013_161208092	0.183428	HNF4A	ENST00000515452.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367983.4|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr12_+_56114151_56114185	0.180133	HNF4A	ENST00000547072.1|RDH5|ENSG00000135437.5|retinol dehydrogenase 5 (11-cis/9-cis) 	ENST00000552930.1|RDH5|ENSG00000135437.5|retinol dehydrogenase 5 (11-cis/9-cis) 	ENST00000257895.5|RDH5|ENSG00000135437.5|retinol dehydrogenase 5 (11-cis/9-cis)
hg19_v2_chr6_-_30080876_30080883	0.179817	HNF4A	ENST00000376734.3|TRIM31|ENSG00000204616.6|tripartite motif containing 31
hg19_v2_chr6_+_30882108_30882159	0.177114	HNF4A	ENST00000541562.1|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial 	ENST00000421263.1|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr12_-_7125770_7125835	0.17402	HNF4A	ENST00000261407.4|LPCAT3|ENSG00000111684.6|lysophosphatidylcholine acyltransferase 3
hg19_v2_chr10_-_96829246_96829259	0.172631	HNF4A	ENST00000371270.3|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8 	ENST00000535898.1|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8 	ENST00000539050.1|CYP2C8|ENSG00000138115.9|cytochrome P450, family 2, subfamily C, polypeptide 8
hg19_v2_chr3_+_37284824_37284833	0.16667	HNF4A	ENST00000431105.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr22_+_27068704_27068763	0.165156	HNF4A	ENST00000444388.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000450963.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000449017.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr8_+_70404996_70405088	0.162951	HNF4A	ENST00000402687.4|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000419716.3|SULF1|ENSG00000137573.9|sulfatase 1
hg19_v2_chr5_-_79950371_79950493	0.161189	HNF4A	ENST00000511032.1|DHFR|ENSG00000228716.2|dihydrofolate reductase 	ENST00000504396.1|DHFR|ENSG00000228716.2|dihydrofolate reductase 	ENST00000505337.1|DHFR|ENSG00000228716.2|dihydrofolate reductase
hg19_v2_chr19_-_49339080_49339129	0.158932	HNF4A	ENST00000595764.1|HSD17B14|ENSG00000087076.4|hydroxysteroid (17-beta) dehydrogenase 14
hg19_v2_chr20_+_36661910_36661968	0.157708	HNF4A	ENST00000373433.4|RPRD1B|ENSG00000101413.7|regulation of nuclear pre-mRNA domain containing 1B
hg19_v2_chr20_-_36156264_36156288	0.157704	HNF4A	ENST00000445723.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000414080.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr12_-_118810688_118810750	0.155763	HNF4A	ENST00000542532.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000392533.3|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr4_-_10023095_10023109	0.152532	HNF4A	ENST00000264784.3|SLC2A9|ENSG00000109667.7|solute carrier family 2 (facilitated glucose transporter), member 9
hg19_v2_chr3_+_37284668_37284771	0.151237	HNF4A	ENST00000361924.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000444882.1|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000356847.4|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000450863.2|GOLGA4|ENSG00000144674.12|golgin A4 	ENST00000429018.1|GOLGA4|ENSG00000144674.12|golgin A4
hg19_v2_chr1_-_211848899_211848981	0.150716	HNF4A	ENST00000366998.3|NEK2|ENSG00000117650.8|NIMA-related kinase 2 	ENST00000540251.1|NEK2|ENSG00000117650.8|NIMA-related kinase 2 	ENST00000366999.4|NEK2|ENSG00000117650.8|NIMA-related kinase 2
hg19_v2_chr1_-_23694794_23694879	0.150476	HNF4A	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chr14_+_101295948_101296031	0.149618	HNF4A	ENST00000452514.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr12_-_53594227_53594242	0.148577	HNF4A	ENST00000550743.2|ITGB7|ENSG00000139626.11|integrin, beta 7
hg19_v2_chr18_-_61034743_61034768	0.148276	HNF4A	ENST00000406396.3|KDSR|ENSG00000119537.11|3-ketodihydrosphingosine reductase
hg19_v2_chr16_-_3350614_3350614	0.148058	HNF4A	ENST00000268674.2|TIGD7|ENSG00000140993.6|tigger transposable element derived 7
hg19_v2_chr13_+_50656307_50656405	0.14731	HNF4A	ENST00000378180.4|DLEU1|ENSG00000176124.7|deleted in lymphocytic leukemia 1 (non-protein coding)
hg19_v2_chr17_-_28618867_28618944	0.14627	HNF4A	ENST00000394819.3|BLMH|ENSG00000108578.10|bleomycin hydrolase 	ENST00000577623.1|BLMH|ENSG00000108578.10|bleomycin hydrolase
hg19_v2_chr12_+_56114189_56114208	0.142024	HNF4A	ENST00000548082.1|RDH5|ENSG00000135437.5|retinol dehydrogenase 5 (11-cis/9-cis)
hg19_v2_chr12_+_121163602_121163682	0.140411	HNF4A	ENST00000411593.2|ACADS|ENSG00000122971.4|acyl-CoA dehydrogenase, C-2 to C-3 short chain
hg19_v2_chr2_+_159313452_159313624	0.139416	HNF4A	ENST00000389757.3|PKP4|ENSG00000144283.17|plakophilin 4 	ENST00000389759.3|PKP4|ENSG00000144283.17|plakophilin 4
hg19_v2_chr3_-_194072019_194072074	0.133261	HNF4A	ENST00000429275.1|CPN2|ENSG00000178772.6|carboxypeptidase N, polypeptide 2 	ENST00000323830.3|CPN2|ENSG00000178772.6|carboxypeptidase N, polypeptide 2
hg19_v2_chr2_+_191792376_191792426	0.133099	HNF4A	ENST00000409428.1|GLS|ENSG00000115419.8|glutaminase 	ENST00000409215.1|GLS|ENSG00000115419.8|glutaminase
hg19_v2_chr1_-_177939041_177939053	0.130449	HNF4A	ENST00000308284.6|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr4_+_159593271_159593295	0.129817	HNF4A	ENST00000512251.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase 	ENST00000511912.1|ETFDH|ENSG00000171503.7|electron-transferring-flavoprotein dehydrogenase
hg19_v2_chr9_-_27005686_27005695	0.125963	HNF4A	ENST00000380055.5|LRRC19|ENSG00000184434.7|leucine rich repeat containing 19
hg19_v2_chr2_-_219433014_219433100	0.125811	HNF4A	ENST00000418019.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000454775.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000338465.5|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000415516.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000258399.3|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37
hg19_v2_chr19_-_42758040_42758064	0.124944	HNF4A	ENST00000593944.1|ERF|ENSG00000105722.5|Ets2 repressor factor
hg19_v2_chr4_-_120243545_120243562	0.123423	HNF4A	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr5_+_14664762_14664868	0.122427	HNF4A	ENST00000284274.4|FAM105B|ENSG00000154124.4|family with sequence similarity 105, member B
hg19_v2_chr15_-_41120896_41120922	0.120356	HNF4A	ENST00000299174.5|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D 	ENST00000427255.2|PPP1R14D|ENSG00000166143.5|protein phosphatase 1, regulatory (inhibitor) subunit 14D
hg19_v2_chr18_-_54318353_54318505	0.120038	HNF4A	ENST00000590954.1|TXNL1|ENSG00000091164.8|thioredoxin-like 1 	ENST00000540155.1|TXNL1|ENSG00000091164.8|thioredoxin-like 1
hg19_v2_chr11_-_63536113_63536286	0.117946	HNF4A	ENST00000433688.1|C11orf95|ENSG00000188070.8|chromosome 11 open reading frame 95 	ENST00000546282.2|RP11-466C23.4|ENSG00000255651.2|RP11-466C23.4
hg19_v2_chr17_-_36105009_36105060	0.117274	HNF4A	ENST00000560016.1|HNF1B|ENSG00000108753.8|HNF1 homeobox B 	ENST00000427275.2|HNF1B|ENSG00000108753.8|HNF1 homeobox B 	ENST00000561193.1|HNF1B|ENSG00000108753.8|HNF1 homeobox B
hg19_v2_chr12_+_67663056_67663067	0.117136	HNF4A	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr3_-_125775629_125775681	0.116235	HNF4A	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr6_+_80341000_80341025	0.11593	HNF4A	ENST00000369838.4|SH3BGRL2|ENSG00000198478.6|SH3 domain binding glutamic acid-rich protein like 2
hg19_v2_chr1_-_161207986_161208000	0.115878	HNF4A	ENST00000506209.1|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3 	ENST00000367980.2|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr3_+_63898275_63898396	0.115224	HNF4A	ENST00000538065.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr12_-_95009837_95009854	0.114112	HNF4A	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr5_+_133842243_133842269	0.113749	HNF4A	ENST00000515627.2|AC005355.2|ENSG00000251169.2|AC005355.2
hg19_v2_chr17_-_7082861_7082883	0.113589	HNF4A	ENST00000269299.3|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1
hg19_v2_chr14_-_76447336_76447358	0.112943	HNF4A	ENST00000556285.1|TGFB3|ENSG00000119699.3|transforming growth factor, beta 3
hg19_v2_chr16_+_21244986_21245042	0.111002	HNF4A	ENST00000311620.5|ANKS4B|ENSG00000175311.5|ankyrin repeat and sterile alpha motif domain containing 4B
hg19_v2_chr2_+_219433588_219433608	0.106387	HNF4A	ENST00000295701.5|RQCD1|ENSG00000144580.9|RCD1 required for cell differentiation1 homolog (S. pombe)
hg19_v2_chr4_+_113152881_113152912	0.105066	HNF4A	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr19_+_10197463_10197530	0.104522	HNF4A	ENST00000590378.1|C19orf66|ENSG00000130813.13|chromosome 19 open reading frame 66 	ENST00000397881.3|C19orf66|ENSG00000130813.13|chromosome 19 open reading frame 66
hg19_v2_chr5_-_16509101_16509113	0.104254	HNF4A	ENST00000399793.2|FAM134B|ENSG00000154153.9|family with sequence similarity 134, member B
hg19_v2_chr6_-_30080863_30080872	0.103282	HNF4A	ENST00000540829.1|TRIM31|ENSG00000204616.6|tripartite motif containing 31
hg19_v2_chrX_-_77041685_77041716	0.100931	HNF4A	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr2_-_180871780_180871851	0.100566	HNF4A	ENST00000410053.3|CWC22|ENSG00000163510.9|CWC22 spliceosome-associated protein homolog (S. cerevisiae) 	ENST00000295749.6|CWC22|ENSG00000163510.9|CWC22 spliceosome-associated protein homolog (S. cerevisiae) 	ENST00000404136.2|CWC22|ENSG00000163510.9|CWC22 spliceosome-associated protein homolog (S. cerevisiae)
hg19_v2_chr10_-_21186144_21186247	0.0964468	HNF4A	ENST00000377119.1|NEBL|ENSG00000078114.14|nebulette
hg19_v2_chr20_+_62694461_62694585	0.0962644	HNF4A	ENST00000343484.5|TCEA2|ENSG00000171703.12|transcription elongation factor A (SII), 2 	ENST00000395053.3|TCEA2|ENSG00000171703.12|transcription elongation factor A (SII), 2
hg19_v2_chr3_+_63897605_63897797	0.0938008	HNF4A	ENST00000487717.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr9_-_136605042_136605082	0.0927748	HNF4A	ENST00000371872.4|SARDH|ENSG00000123453.12|sarcosine dehydrogenase 	ENST00000298628.5|SARDH|ENSG00000123453.12|sarcosine dehydrogenase 	ENST00000422262.2|SARDH|ENSG00000123453.12|sarcosine dehydrogenase
hg19_v2_chr3_-_125313934_125313934	0.0926222	HNF4A	ENST00000296220.5|OSBPL11|ENSG00000144909.7|oxysterol binding protein-like 11
hg19_v2_chr19_+_4639514_4639575	0.0912419	HNF4A	ENST00000327473.4|TNFAIP8L1|ENSG00000185361.4|tumor necrosis factor, alpha-induced protein 8-like 1
hg19_v2_chr1_-_161207953_161207975	0.0899573	HNF4A	ENST00000367982.4|NR1I3|ENSG00000143257.7|nuclear receptor subfamily 1, group I, member 3
hg19_v2_chr6_+_30881982_30882080	0.0895564	HNF4A	ENST00000321897.5|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial 	ENST00000416670.2|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial 	ENST00000542001.1|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial 	ENST00000428017.1|VARS2|ENSG00000137411.12|valyl-tRNA synthetase 2, mitochondrial
hg19_v2_chr19_+_7660716_7660802	0.0893662	HNF4A	ENST00000160298.4|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3 	ENST00000446248.2|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3
hg19_v2_chr8_+_96037255_96037318	0.0861934	HNF4A	ENST00000286687.4|NDUFAF6|ENSG00000156170.8|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
hg19_v2_chr16_+_66600294_66600417	0.0859259	HNF4A	ENST00000535705.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000332695.7|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000336328.6|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000528324.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000531885.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000529506.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000457188.2|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000533666.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000533953.1|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000379500.2|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1 	ENST00000328020.6|CMTM1|ENSG00000089505.13|CKLF-like MARVEL transmembrane domain containing 1
hg19_v2_chr14_-_23446003_23446019	0.0857536	HNF4A	ENST00000553911.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr16_-_88752889_88752921	0.0846587	HNF4A	ENST00000332281.5|SNAI3|ENSG00000185669.5|snail family zinc finger 3
hg19_v2_chr10_+_102106829_102106881	0.0827639	HNF4A	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr12_-_54121261_54121529	0.0814961	HNF4A	ENST00000549784.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000262059.4|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1
hg19_v2_chr15_+_81489213_81489228	0.0799572	HNF4A	ENST00000559383.1|IL16|ENSG00000172349.12|interleukin 16 	ENST00000394660.2|IL16|ENSG00000172349.12|interleukin 16
hg19_v2_chr4_+_144312659_144312668	0.0785596	HNF4A	ENST00000509992.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr2_-_43019698_43019739	0.078451	HNF4A	ENST00000431905.1|HAAO|ENSG00000162882.10|3-hydroxyanthranilate 3,4-dioxygenase 	ENST00000294973.6|HAAO|ENSG00000162882.10|3-hydroxyanthranilate 3,4-dioxygenase
hg19_v2_chr2_+_48796120_48796159	0.0784345	HNF4A	ENST00000394754.1|STON1-GTF2A1L|ENSG00000068781.16|STON1-GTF2A1L readthrough
hg19_v2_chr17_-_38256973_38256990	0.0744088	HNF4A	ENST00000246672.3|NR1D1|ENSG00000126368.5|nuclear receptor subfamily 1, group D, member 1
hg19_v2_chr17_-_27503770_27503796	0.0739452	HNF4A	ENST00000533112.1|MYO18A|ENSG00000196535.10|myosin XVIIIA
hg19_v2_chr20_+_44486246_44486267	0.0717006	HNF4A	ENST00000255152.2|ZSWIM3|ENSG00000132801.5|zinc finger, SWIM-type containing 3 	ENST00000454862.2|ZSWIM3|ENSG00000132801.5|zinc finger, SWIM-type containing 3
hg19_v2_chr10_+_96698406_96698428	0.0701232	HNF4A	ENST00000260682.6|CYP2C9|ENSG00000138109.9|cytochrome P450, family 2, subfamily C, polypeptide 9
hg19_v2_chr9_-_15307200_15307358	0.0701113	HNF4A	ENST00000506891.1|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B 	ENST00000541445.1|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B 	ENST00000512701.2|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B 	ENST00000380850.4|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B 	ENST00000297615.5|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B 	ENST00000355694.2|TTC39B|ENSG00000155158.16|tetratricopeptide repeat domain 39B
hg19_v2_chr15_+_101142722_101142816	0.0698793	HNF4A	ENST00000332783.7|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7 	ENST00000558747.1|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7 	ENST00000343276.4|ASB7|ENSG00000183475.8|ankyrin repeat and SOCS box containing 7
hg19_v2_chr15_+_50716576_50716624	0.0695129	HNF4A	ENST00000560297.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000307179.4|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000396444.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000433963.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000425032.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8
hg19_v2_chr3_-_141868293_141868355	0.0683244	HNF4A	ENST00000317104.7|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000494358.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr12_-_54121212_54121254	0.065279	HNF4A	ENST00000548263.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000430117.2|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000550804.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000549173.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000551900.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000546619.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000548177.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1 	ENST00000549349.1|CALCOCO1|ENSG00000012822.11|calcium binding and coiled-coil domain 1
hg19_v2_chrX_+_65382433_65382486	0.064139	HNF4A	ENST00000374727.3|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr6_+_31691121_31691162	0.0623375	HNF4A	ENST00000480039.1|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375810.4|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375805.2|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375809.3|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375804.2|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375814.3|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25 	ENST00000375806.2|C6orf25|ENSG00000204420.4|chromosome 6 open reading frame 25
hg19_v2_chr7_+_100663353_100663373	0.0620594	HNF4A	ENST00000306151.4|MUC17|ENSG00000169876.9|mucin 17, cell surface associated
hg19_v2_chrX_+_65382381_65382392	0.0612673	HNF4A	ENST00000519389.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr11_-_64660916_64660922	0.06034	HNF4A	ENST00000413053.1|MIR194-2|ENSG00000229719.2|microRNA 194-2
hg19_v2_chr18_+_34124507_34124520	0.0598908	HNF4A	ENST00000591635.1|FHOD3|ENSG00000134775.11|formin homology 2 domain containing 3
hg19_v2_chr17_+_41857793_41857814	0.0598353	HNF4A	ENST00000449302.3|C17orf105|ENSG00000231256.3|chromosome 17 open reading frame 105
hg19_v2_chr6_+_31949801_31949845	0.0578958	HNF4A	ENST00000428956.2|C4A|ENSG00000244731.3|complement component 4A (Rodgers blood group) 	ENST00000498271.1|C4A|ENSG00000244731.3|complement component 4A (Rodgers blood group)
hg19_v2_chr2_-_39348137_39348212	0.057564	HNF4A	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr4_-_120225600_120225600	0.0574259	HNF4A	ENST00000399075.4|C4orf3|ENSG00000164096.10|chromosome 4 open reading frame 3
hg19_v2_chr19_+_39881951_39882064	0.0558296	HNF4A	ENST00000315588.5|MED29|ENSG00000063322.9|mediator complex subunit 29 	ENST00000594368.1|MED29|ENSG00000063322.9|mediator complex subunit 29 	ENST00000599213.2|MED29|ENSG00000063322.9|mediator complex subunit 29 	ENST00000596297.1|MED29|ENSG00000063322.9|mediator complex subunit 29
hg19_v2_chr1_-_11863171_11863302	0.0551849	HNF4A	ENST00000376592.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr2_-_21266816_21266849	0.0547248	HNF4A	ENST00000399256.4|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr14_+_23790655_23790680	0.0544857	HNF4A	ENST00000397276.2|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr17_-_7082668_7082725	0.0543602	HNF4A	ENST00000573083.1|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1 	ENST00000574388.1|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1
hg19_v2_chr22_+_27068766_27068819	0.0530356	HNF4A	ENST00000435162.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000437071.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000440816.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000421253.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr1_+_180601139_180601180	0.0528045	HNF4A	ENST00000367590.4|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1 	ENST00000367589.3|XPR1|ENSG00000143324.9|xenotropic and polytropic retrovirus receptor 1
hg19_v2_chr1_-_15911510_15911605	0.0517777	HNF4A	ENST00000375826.3|AGMAT|ENSG00000116771.5|agmatine ureohydrolase (agmatinase)
hg19_v2_chr6_+_31982539_31982623	0.0512275	HNF4A	ENST00000435363.2|C4B|ENSG00000224389.4|complement component 4B (Chido blood group) 	ENST00000425700.2|C4B|ENSG00000224389.4|complement component 4B (Chido blood group)
hg19_v2_chr1_+_113217309_113217333	0.0508467	HNF4A	ENST00000544796.1|MOV10|ENSG00000155363.14|Mov10, Moloney leukemia virus 10, homolog (mouse) 	ENST00000369644.1|MOV10|ENSG00000155363.14|Mov10, Moloney leukemia virus 10, homolog (mouse)
hg19_v2_chr15_-_101142362_101142395	0.0502884	HNF4A	ENST00000559577.1|LINS|ENSG00000140471.12|lines homolog (Drosophila) 	ENST00000561308.1|LINS|ENSG00000140471.12|lines homolog (Drosophila) 	ENST00000560133.1|LINS|ENSG00000140471.12|lines homolog (Drosophila) 	ENST00000560941.1|LINS|ENSG00000140471.12|lines homolog (Drosophila) 	ENST00000559736.1|LINS|ENSG00000140471.12|lines homolog (Drosophila) 	ENST00000560272.1|LINS|ENSG00000140471.12|lines homolog (Drosophila)
hg19_v2_chr15_+_63340775_63340789	0.0497941	HNF4A	ENST00000559281.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha) 	ENST00000317516.7|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr15_+_63340858_63341012	0.0497811	HNF4A	ENST00000560615.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr12_-_121973974_121974155	0.0495376	HNF4A	ENST00000538379.1|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B 	ENST00000541318.1|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B 	ENST00000541511.1|KDM2B|ENSG00000089094.12|lysine (K)-specific demethylase 2B
hg19_v2_chr5_+_136070614_136070625	0.0486625	HNF4A	ENST00000502421.1|CTB-1I21.1|ENSG00000250284.1|CTB-1I21.1
hg19_v2_chr19_+_1205740_1205792	0.0478147	HNF4A	ENST00000326873.7|STK11|ENSG00000118046.10|serine/threonine kinase 11
hg19_v2_chr8_-_98290087_98290197	0.047678	HNF4A	ENST00000322128.3|TSPYL5|ENSG00000180543.3|TSPY-like 5
hg19_v2_chr14_+_23352374_23352440	0.0473217	HNF4A	ENST00000267396.4|REM2|ENSG00000139890.5|RAS (RAD and GEM)-like GTP binding 2 	ENST00000536884.1|REM2|ENSG00000139890.5|RAS (RAD and GEM)-like GTP binding 2
hg19_v2_chr12_-_6665200_6665255	0.0461475	HNF4A	ENST00000336604.4|IFFO1|ENSG00000010295.15|intermediate filament family orphan 1 	ENST00000396840.2|IFFO1|ENSG00000010295.15|intermediate filament family orphan 1 	ENST00000356896.4|IFFO1|ENSG00000010295.15|intermediate filament family orphan 1
hg19_v2_chr11_-_64163297_64163310	0.0460843	HNF4A	ENST00000457725.1|AP003774.6|ENSG00000231680.1|AP003774.6
hg19_v2_chr10_+_81065975_81066052	0.0443191	HNF4A	ENST00000446377.2|ZMIZ1|ENSG00000108175.12|zinc finger, MIZ-type containing 1
hg19_v2_chr19_-_12886327_12886434	0.0441582	HNF4A	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr13_+_52586517_52586559	0.0437998	HNF4A	ENST00000523764.1|ALG11|ENSG00000253710.1|ALG11, alpha-1,2-mannosyltransferase 	ENST00000521508.1|ALG11|ENSG00000253710.1|ALG11, alpha-1,2-mannosyltransferase
hg19_v2_chr17_+_4853442_4853485	0.0433874	HNF4A	ENST00000522301.1|ENO3|ENSG00000108515.13|enolase 3 (beta, muscle)
hg19_v2_chr12_-_46384334_46384367	0.0422404	HNF4A	ENST00000369367.3|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000266589.6|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395453.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11 	ENST00000395454.2|SCAF11|ENSG00000139218.13|SR-related CTD-associated factor 11
hg19_v2_chr12_+_121416489_121416552	0.0414849	HNF4A	ENST00000541395.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A 	ENST00000544413.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A
hg19_v2_chr16_+_19429018_19429065	0.0413828	HNF4A	ENST00000542583.2|TMC5|ENSG00000103534.12|transmembrane channel-like 5
hg19_v2_chr19_+_10196981_10197034	0.0412525	HNF4A	ENST00000591813.1|C19orf66|ENSG00000130813.13|chromosome 19 open reading frame 66
hg19_v2_chr11_-_71750865_71750883	0.0412394	HNF4A	ENST00000544129.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr7_+_33765593_33765593	0.0404029	HNF4A	ENST00000311067.3|RP11-89N17.1|ENSG00000173862.3|HCG1643653; Uncharacterized protein
hg19_v2_chr14_+_39735411_39735502	0.0390822	HNF4A	ENST00000603904.1|RP11-407N17.3|ENSG00000258941.2|cTAGE family member 5 isoform 4
hg19_v2_chr12_+_53497263_53497311	0.0389714	HNF4A	ENST00000551896.1|SOAT2|ENSG00000167780.7|sterol O-acyltransferase 2 	ENST00000301466.3|SOAT2|ENSG00000167780.7|sterol O-acyltransferase 2
hg19_v2_chr14_+_23790690_23790752	0.0381907	HNF4A	ENST00000556821.1|PABPN1|ENSG00000100836.6|poly(A) binding protein, nuclear 1
hg19_v2_chr6_+_43028182_43028300	0.0380543	HNF4A	ENST00000394058.1|KLC4|ENSG00000137171.10|kinesin light chain 4
hg19_v2_chr14_+_77647966_77648103	0.0377058	HNF4A	ENST00000554766.1|TMEM63C|ENSG00000165548.6|transmembrane protein 63C
hg19_v2_chr3_-_120400960_120401030	0.0351778	HNF4A	ENST00000476082.2|HGD|ENSG00000113924.7|homogentisate 1,2-dioxygenase
hg19_v2_chr5_-_32444828_32444872	0.0346469	HNF4A	ENST00000265069.8|ZFR|ENSG00000056097.11|zinc finger RNA binding protein
hg19_v2_chr15_+_63340734_63340769	0.0322951	HNF4A	ENST00000560959.1|TPM1|ENSG00000140416.15|tropomyosin 1 (alpha)
hg19_v2_chr11_+_119056178_119056200	0.0318599	HNF4A	ENST00000525131.1|PDZD3|ENSG00000172367.11|PDZ domain containing 3 	ENST00000531114.1|PDZD3|ENSG00000172367.11|PDZ domain containing 3 	ENST00000355547.5|PDZD3|ENSG00000172367.11|PDZ domain containing 3 	ENST00000322712.4|PDZD3|ENSG00000172367.11|PDZ domain containing 3
hg19_v2_chr10_-_103815874_103815953	0.0311411	HNF4A	ENST00000370033.4|C10orf76|ENSG00000120029.8|chromosome 10 open reading frame 76 	ENST00000311122.5|C10orf76|ENSG00000120029.8|chromosome 10 open reading frame 76
hg19_v2_chr19_-_35625765_35625776	0.0311138	HNF4A	ENST00000591633.1|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4
hg19_v2_chr1_-_43751276_43751293	0.0305993	HNF4A	ENST00000423420.1|C1orf210|ENSG00000253313.1|chromosome 1 open reading frame 210
hg19_v2_chr8_+_104831554_104831615	0.0301683	HNF4A	ENST00000408894.2|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr10_+_70320413_70320413	0.0300155	HNF4A	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr11_-_71781096_71781147	0.0289637	HNF4A	ENST00000535087.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1 	ENST00000535838.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr1_+_113217073_113217127	0.0277586	HNF4A	ENST00000369645.1|MOV10|ENSG00000155363.14|Mov10, Moloney leukemia virus 10, homolog (mouse)
hg19_v2_chr1_-_41131326_41131400	0.0264182	HNF4A	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr12_+_121416437_121416479	0.0261486	HNF4A	ENST00000402929.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A 	ENST00000535955.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A 	ENST00000538626.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A 	ENST00000543427.1|HNF1A|ENSG00000135100.13|HNF1 homeobox A
hg19_v2_chr6_+_32146131_32146230	0.0254752	HNF4A	ENST00000375094.3|RNF5|ENSG00000204308.6|ring finger protein 5, E3 ubiquitin protein ligase
hg19_v2_chr2_+_219135115_219135261	0.024411	HNF4A	ENST00000248451.3|PNKD|ENSG00000127838.9|paroxysmal nonkinesigenic dyskinesia 	ENST00000273077.4|PNKD|ENSG00000127838.9|paroxysmal nonkinesigenic dyskinesia
hg19_v2_chr17_-_2614927_2615027	0.0233461	HNF4A	ENST00000435359.1|CLUH|ENSG00000132361.12|clustered mitochondria (cluA/CLU1) homolog
hg19_v2_chr1_+_241695670_241695705	0.0233122	HNF4A	ENST00000366557.4|KMO|ENSG00000117009.7|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
hg19_v2_chr19_-_48867171_48867204	0.02321	HNF4A	ENST00000377431.2|TMEM143|ENSG00000161558.6|transmembrane protein 143 	ENST00000436660.2|TMEM143|ENSG00000161558.6|transmembrane protein 143 	ENST00000541566.1|TMEM143|ENSG00000161558.6|transmembrane protein 143
hg19_v2_chr7_+_143080063_143080093	0.0213735	HNF4A	ENST00000446634.1|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr19_+_46806856_46806883	0.0208671	HNF4A	ENST00000300862.3|HIF3A|ENSG00000124440.11|hypoxia inducible factor 3, alpha subunit
hg19_v2_chr1_-_29508321_29508444	0.0194534	HNF4A	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr9_-_35685452_35685516	0.0191548	HNF4A	ENST00000607559.1|TPM2|ENSG00000198467.9|tropomyosin 2 (beta)
hg19_v2_chr17_-_44896047_44896126	0.0188237	HNF4A	ENST00000225512.5|WNT3|ENSG00000108379.5|wingless-type MMTV integration site family, member 3
hg19_v2_chr22_+_19950060_19950096	0.0166458	HNF4A	ENST00000449653.1|COMT|ENSG00000093010.7|catechol-O-methyltransferase
hg19_v2_chr6_-_33385823_33385852	0.0155445	HNF4A	ENST00000494751.1|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli) 	ENST00000374496.3|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli)
hg19_v2_chr20_-_36156293_36156333	0.0153551	HNF4A	ENST00000373537.2|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000414542.2|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr2_-_21266935_21266951	0.013886	HNF4A	ENST00000233242.1|APOB|ENSG00000084674.9|apolipoprotein B
hg19_v2_chr1_+_241695424_241695440	0.0133121	HNF4A	ENST00000366558.3|KMO|ENSG00000117009.7|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 	ENST00000366559.4|KMO|ENSG00000117009.7|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
hg19_v2_chr12_-_39837192_39837206	0.0132183	HNF4A	ENST00000361961.3|KIF21A|ENSG00000139116.13|kinesin family member 21A 	ENST00000395670.3|KIF21A|ENSG00000139116.13|kinesin family member 21A
hg19_v2_chr3_+_9745510_9745528	0.0129994	HNF4A	ENST00000383831.3|CPNE9|ENSG00000144550.8|copine family member IX
hg19_v2_chr6_+_147527103_147527118	0.0123137	HNF4A	ENST00000179882.6|STXBP5|ENSG00000164506.10|syntaxin binding protein 5 (tomosyn)
hg19_v2_chr3_+_123813509_123813528	0.0119673	HNF4A	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr1_+_113217345_113217367	0.0118276	HNF4A	ENST00000357443.2|MOV10|ENSG00000155363.14|Mov10, Moloney leukemia virus 10, homolog (mouse)
hg19_v2_chr1_-_26197744_26197744	0.0112936	HNF4A	ENST00000374296.3|PAQR7|ENSG00000182749.5|progestin and adipoQ receptor family member VII
hg19_v2_chr4_+_109541740_109541761	0.01122	HNF4A	ENST00000394665.1|RPL34|ENSG00000109475.12|ribosomal protein L34
hg19_v2_chr1_-_151138323_151138395	0.0105837	HNF4A	ENST00000368908.5|LYSMD1|ENSG00000163155.7|LysM, putative peptidoglycan-binding, domain containing 1
hg19_v2_chr3_+_46919235_46919242	0.00959234	HNF4A	ENST00000449590.1|PTH1R|ENSG00000160801.9|parathyroid hormone 1 receptor
hg19_v2_chr20_-_36156125_36156250	0.00957062	HNF4A	ENST00000397135.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein 	ENST00000397137.1|BLCAP|ENSG00000166619.8|bladder cancer associated protein
hg19_v2_chr1_+_113217043_113217070	0.00945632	HNF4A	ENST00000413052.2|MOV10|ENSG00000155363.14|Mov10, Moloney leukemia virus 10, homolog (mouse)
hg19_v2_chr1_-_41131106_41131117	0.00841013	HNF4A	ENST00000372683.1|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr3_-_52002194_52002250	0.00808046	HNF4A	ENST00000466412.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr6_+_143999072_143999170	0.00753279	HNF4A	ENST00000440869.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000367582.3|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2 	ENST00000451827.2|PHACTR2|ENSG00000112419.10|phosphatase and actin regulator 2
hg19_v2_chr17_+_48423453_48423505	0.00693704	HNF4A	ENST00000017003.2|XYLT2|ENSG00000015532.5|xylosyltransferase II 	ENST00000509778.1|XYLT2|ENSG00000015532.5|xylosyltransferase II 	ENST00000507602.1|XYLT2|ENSG00000015532.5|xylosyltransferase II
hg19_v2_chr11_-_10315741_10315773	0.00585691	HNF4A	ENST00000256190.8|SBF2|ENSG00000133812.10|SET binding factor 2
hg19_v2_chr16_-_11692320_11692356	0.00522619	HNF4A	ENST00000571627.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr2_+_74648848_74648894	0.0044244	HNF4A	ENST00000409791.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000426787.1|WDR54|ENSG00000005448.12|WD repeat domain 54 	ENST00000348227.4|WDR54|ENSG00000005448.12|WD repeat domain 54
hg19_v2_chr14_+_77648167_77648183	0.00305656	HNF4A	ENST00000554346.1|TMEM63C|ENSG00000165548.6|transmembrane protein 63C 	ENST00000298351.4|TMEM63C|ENSG00000165548.6|transmembrane protein 63C
hg19_v2_chr6_+_30594619_30594665	0.00274181	HNF4A	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr12_-_109219937_109220062	0.00260835	HNF4A	ENST00000546697.1|SSH1|ENSG00000084112.10|slingshot protein phosphatase 1
hg19_v2_chr2_-_150444116_150444299	0.00168639	HNF4A	ENST00000428879.1|MMADHC|ENSG00000168288.8|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENST00000422782.2|MMADHC|ENSG00000168288.8|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
hg19_v2_chr19_-_35626104_35626161	0.00163891	HNF4A	ENST00000310123.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4 	ENST00000392225.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4
hg19_v2_chr22_-_31063782_31063879	0.0007514	HNF4A	ENST00000404885.1|DUSP18|ENSG00000167065.9|dual specificity phosphatase 18 	ENST00000403268.1|DUSP18|ENSG00000167065.9|dual specificity phosphatase 18 	ENST00000407308.1|DUSP18|ENSG00000167065.9|dual specificity phosphatase 18 	ENST00000342474.4|DUSP18|ENSG00000167065.9|dual specificity phosphatase 18 	ENST00000334679.3|DUSP18|ENSG00000167065.9|dual specificity phosphatase 18
