hg19_v2_chr14_+_94577074_94577161	1.801	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr1_-_153433120_153433177	1.79837	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr20_+_44637526_44637554	1.34247	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr12_+_113354341_113354422	1.05343	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr7_-_41742697_41742714	0.93922	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr20_+_62327996_62328021	0.929536	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr11_+_69061594_69061635	0.892067	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr5_-_150460914_150460997	0.815108	GLI3	ENST00000389378.2|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr22_-_50970566_50970644	0.803842	GLI3	ENST00000405135.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000401779.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr1_+_152956549_152956566	0.739387	GLI3	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr16_+_2880157_2880210	0.727361	GLI3	ENST00000382280.3|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr7_+_76101379_76101379	0.71314	GLI3	ENST00000429179.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila)
hg19_v2_chr16_+_3115611_3115813	0.712686	GLI3	ENST00000530890.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000444393.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000533097.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000008180.9|IL32|ENSG00000008517.12|interleukin 32 	ENST00000396890.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525228.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548652.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525377.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000530538.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000549213.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552936.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548476.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552664.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552356.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000551513.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000382213.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548246.1|IL32|ENSG00000008517.12|interleukin 32
hg19_v2_chr8_-_42065187_42065242	0.693065	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr6_-_29648887_29648944	0.662211	GLI3	ENST00000376883.1|ZFP57|ENSG00000204644.5|ZFP57 zinc finger protein
hg19_v2_chr5_-_150460539_150460640	0.631302	GLI3	ENST00000520931.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000520695.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000521591.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1 	ENST00000518977.1|TNIP1|ENSG00000145901.10|TNFAIP3 interacting protein 1
hg19_v2_chr22_+_31489344_31489371	0.595333	GLI3	ENST00000404574.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr6_-_133084580_133084605	0.577207	GLI3	ENST00000525270.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000530536.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000524919.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr20_+_62185491_62185539	0.574582	GLI3	ENST00000370097.1|C20orf195|ENSG00000125531.5|chromosome 20 open reading frame 195
hg19_v2_chr7_-_155437075_155437113	0.565399	GLI3	ENST00000401694.1|AC009403.2|ENSG00000216895.4|Protein LOC100506302
hg19_v2_chr16_+_58033450_58033483	0.563598	GLI3	ENST00000561743.1|USB1|ENSG00000103005.7|U6 snRNA biogenesis 1
hg19_v2_chr22_-_50970919_50971009	0.558989	GLI3	ENST00000329363.4|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000437588.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr14_+_103592636_103592664	0.555469	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr9_-_5339873_5339881	0.55321	GLI3	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chr17_+_6659354_6659398	0.542841	GLI3	ENST00000574907.1|XAF1|ENSG00000132530.12|XIAP associated factor 1
hg19_v2_chr17_+_41158742_41158822	0.539075	GLI3	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr19_+_2096868_2096922	0.518108	GLI3	ENST00000395296.1|IZUMO4|ENSG00000099840.9|IZUMO family member 4 	ENST00000395301.3|IZUMO4|ENSG00000099840.9|IZUMO family member 4
hg19_v2_chr4_+_74735102_74735121	0.516712	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr19_-_42931567_42931581	0.510651	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr20_-_36793663_36793735	0.496189	GLI3	ENST00000536701.1|TGM2|ENSG00000198959.7|transglutaminase 2 	ENST00000536724.1|TGM2|ENSG00000198959.7|transglutaminase 2
hg19_v2_chr6_+_43968306_43968377	0.480054	GLI3	ENST00000442114.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000336600.5|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000439969.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223
hg19_v2_chr4_+_187812086_187812123	0.476933	GLI3	ENST00000507644.2|RP11-11N5.1|ENSG00000250829.2|RP11-11N5.1
hg19_v2_chr7_-_994302_994333	0.473873	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr1_+_152881014_152881031	0.473233	GLI3	ENST00000368764.3|IVL|ENSG00000163207.5|involucrin 	ENST00000392667.2|IVL|ENSG00000163207.5|involucrin
hg19_v2_chr8_-_145642267_145642279	0.464449	GLI3	ENST00000301305.3|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chrX_+_115567767_115567790	0.447864	GLI3	ENST00000371900.4|SLC6A14|ENSG00000087916.7|solute carrier family 6 (amino acid transporter), member 14
hg19_v2_chr17_-_79304150_79304215	0.435293	GLI3	ENST00000574093.1|TMEM105|ENSG00000185332.2|transmembrane protein 105
hg19_v2_chr12_-_49259643_49259681	0.428983	GLI3	ENST00000309739.5|RND1|ENSG00000172602.5|Rho family GTPase 1
hg19_v2_chr1_+_209941942_209941964	0.428414	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr1_-_31845914_31845931	0.422551	GLI3	ENST00000373713.2|FABP3|ENSG00000121769.3|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
hg19_v2_chr16_+_30194916_30194955	0.410555	GLI3	ENST00000570045.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000565497.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000570244.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr3_+_101568349_101568365	0.404451	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr17_-_4710288_4710311	0.403103	GLI3	ENST00000571067.1|RP11-81A22.5|ENSG00000262165.1|RP11-81A22.5
hg19_v2_chr12_-_52845910_52845938	0.397172	GLI3	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr22_-_50970506_50970561	0.375296	GLI3	ENST00000428989.2|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000403326.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr1_+_44457441_44457514	0.374123	GLI3	ENST00000466180.1|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr16_-_55867146_55867249	0.370913	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr15_+_31658349_31658358	0.370225	GLI3	ENST00000558844.1|KLF13|ENSG00000169926.5|Kruppel-like factor 13
hg19_v2_chr17_+_4710391_4710500	0.36877	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr15_+_45938079_45938105	0.364312	GLI3	ENST00000561493.1|SQRDL|ENSG00000137767.9|sulfide quinone reductase-like (yeast)
hg19_v2_chr12_-_48276710_48276725	0.363372	GLI3	ENST00000550314.1|VDR|ENSG00000111424.6|vitamin D (1,25- dihydroxyvitamin D3) receptor
hg19_v2_chr11_-_64646086_64646191	0.354269	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr16_+_88704978_88705001	0.350678	GLI3	ENST00000244241.4|IL17C|ENSG00000124391.4|interleukin 17C
hg19_v2_chr22_+_45714301_45714339	0.34628	GLI3	ENST00000427777.1|FAM118A|ENSG00000100376.7|family with sequence similarity 118, member A
hg19_v2_chr7_+_142985467_142985547	0.345837	GLI3	ENST00000392925.2|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr1_+_44457261_44457280	0.345728	GLI3	ENST00000372318.3|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr16_-_68057770_68057770	0.344218	GLI3	ENST00000332395.5|DDX28|ENSG00000182810.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
hg19_v2_chr6_-_30685214_30685230	0.340538	GLI3	ENST00000425072.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr7_-_108096822_108096889	0.340277	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr1_+_3388181_3388194	0.336829	GLI3	ENST00000418137.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16 	ENST00000413250.2|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr9_+_91150016_91150100	0.334036	GLI3	ENST00000375854.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2 	ENST00000375855.3|NXNL2|ENSG00000130045.11|nucleoredoxin-like 2
hg19_v2_chr14_+_104177607_104177607	0.333737	GLI3	ENST00000429169.1|AL049840.1|ENSG00000224997.1|Uncharacterized protein; cDNA FLJ53535
hg19_v2_chr11_+_111783450_111783475	0.328591	GLI3	ENST00000537382.1|HSPB2|ENSG00000170276.4|Homo sapiens heat shock 27kDa protein 2 (HSPB2), mRNA.
hg19_v2_chr19_+_36602104_36602105	0.328576	GLI3	ENST00000585332.1|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3 	ENST00000262637.4|OVOL3|ENSG00000105261.5|ovo-like zinc finger 3
hg19_v2_chr15_+_67430339_67430366	0.322489	GLI3	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr1_+_10509971_10510095	0.320887	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr11_+_64052692_64052747	0.318773	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr19_+_45165545_45165545	0.316878	GLI3	ENST00000592472.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000587729.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000585657.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000592789.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000591979.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19
hg19_v2_chr6_-_30684898_30684957	0.315582	GLI3	ENST00000422266.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1 	ENST00000416571.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr10_-_112255945_112256004	0.31478	GLI3	ENST00000609514.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4	ENST00000607952.1|RP11-525A16.4|ENSG00000273143.1|RP11-525A16.4
hg19_v2_chr16_+_2079501_2079528	0.310532	GLI3	ENST00000563587.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr2_+_235860690_235860720	0.310407	GLI3	ENST00000416021.1|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr8_-_144691718_144691784	0.307739	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr17_-_15522826_15522826	0.305398	GLI3	ENST00000395906.3|CDRT1|ENSG00000241322.4|CMT1A duplicated region transcript 1
hg19_v2_chr7_-_108096765_108096784	0.302068	GLI3	ENST00000379024.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000351718.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr14_+_106938440_106938474	0.300516	GLI3	ENST00000433371.1|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221 	ENST00000449670.1|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221 	ENST00000334298.3|LINC00221|ENSG00000187156.4|long intergenic non-protein coding RNA 221
hg19_v2_chr19_-_44084586_44084652	0.300374	GLI3	ENST00000599693.1|XRCC1|ENSG00000073050.7|X-ray repair complementing defective repair in Chinese hamster cells 1 	ENST00000598165.1|XRCC1|ENSG00000073050.7|X-ray repair complementing defective repair in Chinese hamster cells 1
hg19_v2_chr1_-_228353112_228353213	0.296246	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr19_+_782755_782833	0.292924	GLI3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr22_-_18256742_18256782	0.292206	GLI3	ENST00000317361.7|BID|ENSG00000015475.14|BH3 interacting domain death agonist
hg19_v2_chr1_-_45308616_45308735	0.291928	GLI3	ENST00000447098.2|PTCH2|ENSG00000117425.9|patched 2 	ENST00000372192.3|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr12_-_13529594_13529616	0.291607	GLI3	ENST00000539026.1|C12orf36|ENSG00000180861.5|chromosome 12 open reading frame 36
hg19_v2_chr20_-_62199427_62199427	0.290808	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr19_+_39647271_39647347	0.28875	GLI3	ENST00000599657.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4
hg19_v2_chr1_+_44399466_44399518	0.288223	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr19_-_2090131_2090175	0.287976	GLI3	ENST00000591326.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr3_-_107596910_107596940	0.281833	GLI3	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr17_+_40440094_40440190	0.279853	GLI3	ENST00000546010.2|STAT5A|ENSG00000126561.12|signal transducer and activator of transcription 5A
hg19_v2_chr4_-_122148620_122148647	0.278265	GLI3	ENST00000509841.1|TNIP3|ENSG00000050730.11|TNFAIP3 interacting protein 3
hg19_v2_chr12_-_54813229_54813273	0.276275	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr7_-_2883650_2883775	0.27586	GLI3	ENST00000544127.1|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr14_-_24729251_24729364	0.275358	GLI3	ENST00000559136.1|TGM1|ENSG00000092295.7|transglutaminase 1
hg19_v2_chr5_-_172755056_172755219	0.274538	GLI3	ENST00000520648.1|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr1_-_152386732_152386745	0.272392	GLI3	ENST00000271835.3|CRNN|ENSG00000143536.7|cornulin
hg19_v2_chr11_-_7904464_7904511	0.272091	GLI3	ENST00000502624.2|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5	ENST00000527565.1|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5
hg19_v2_chr14_+_29236269_29236287	0.272017	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr17_-_73267214_73267277	0.269187	GLI3	ENST00000580717.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000577542.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000579612.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000245551.5|MIF4GD|ENSG00000125457.9|MIF4G domain containing
hg19_v2_chr1_+_155278625_155278745	0.268866	GLI3	ENST00000368356.4|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase 	ENST00000356657.6|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr16_+_30194118_30194165	0.26612	GLI3	ENST00000563778.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr12_+_120933859_120933899	0.264676	GLI3	ENST00000242577.6|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548214.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000392508.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr16_-_58033762_58033762	0.263708	GLI3	ENST00000299237.2|ZNF319|ENSG00000166188.2|zinc finger protein 319
hg19_v2_chr1_-_43833628_43833703	0.259274	GLI3	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr22_-_50708781_50708852	0.257347	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr19_+_36024310_36024329	0.255377	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr20_+_2633269_2633295	0.254978	GLI3	ENST00000445139.1|NOP56|ENSG00000101361.10|NOP56 ribonucleoprotein
hg19_v2_chr1_-_47697387_47697457	0.253328	GLI3	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chrX_-_51812268_51812368	0.251739	GLI3	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr2_+_47799601_47799601	0.25103	GLI3	ENST00000601243.1|AC138655.1|ENSG00000269563.1|CDNA: FLJ23120 fis, clone LNG07989; HCG1987724; Uncharacterized protein
hg19_v2_chr17_-_39928106_39928152	0.25012	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr20_-_1306391_1306513	0.24979	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr19_+_7599128_7599150	0.248881	GLI3	ENST00000545201.2|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr13_+_44947941_44947996	0.247352	GLI3	ENST00000379179.3|SERP2|ENSG00000151778.6|stress-associated endoplasmic reticulum protein family member 2
hg19_v2_chrX_+_37545012_37545064	0.247013	GLI3	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr3_+_184081213_184081224	0.245186	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr6_+_31465892_31465937	0.241344	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr17_-_39165366_39165381	0.24024	GLI3	ENST00000391588.1|KRTAP3-1|ENSG00000212901.2|keratin associated protein 3-1
hg19_v2_chr9_+_136223414_136223474	0.240053	GLI3	ENST00000371964.4|SURF2|ENSG00000148291.5|surfeit 2
hg19_v2_chr6_+_31465849_31465863	0.239192	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr17_+_7531281_7531320	0.236984	GLI3	ENST00000575729.1|SHBG|ENSG00000129214.10|sex hormone-binding globulin 	ENST00000340624.5|SHBG|ENSG00000129214.10|sex hormone-binding globulin
hg19_v2_chr15_+_90728145_90728213	0.235693	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000379122.3|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENST00000332496.6|SEMA4B|ENSG00000185033.10|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
hg19_v2_chr21_+_36041688_36041688	0.232677	GLI3	ENST00000360731.3|CLIC6|ENSG00000159212.8|chloride intracellular channel 6 	ENST00000349499.2|CLIC6|ENSG00000159212.8|chloride intracellular channel 6
hg19_v2_chr1_-_156722195_156722246	0.231788	GLI3	ENST00000368206.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr22_+_31488433_31488454	0.231694	GLI3	ENST00000455608.1|SMTN|ENSG00000183963.14|smoothelin
hg19_v2_chr10_+_30723105_30723173	0.231673	GLI3	ENST00000375322.2|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr1_-_63782888_63782904	0.231387	GLI3	ENST00000436475.2|LINC00466|ENSG00000224209.2|long intergenic non-protein coding RNA 466
hg19_v2_chr9_-_116061476_116061476	0.230671	GLI3	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr20_+_48884002_48884088	0.230148	GLI3	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr11_-_407103_407195	0.228397	GLI3	ENST00000526395.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr9_-_113800705_113800781	0.227466	GLI3	ENST00000441240.1|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr6_+_125540951_125540991	0.226986	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr2_-_26205550_26205624	0.226496	GLI3	ENST00000405914.1|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr17_+_73750699_73750793	0.224819	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr19_-_54618650_54618688	0.223763	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr1_-_21606013_21606059	0.223556	GLI3	ENST00000357071.4|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr22_-_50700140_50700254	0.222199	GLI3	ENST00000215659.8|MAPK12|ENSG00000188130.9|mitogen-activated protein kinase 12
hg19_v2_chr18_+_21529811_21529857	0.221929	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr1_-_209792111_209792143	0.22169	GLI3	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr16_+_89988259_89988354	0.214943	GLI3	ENST00000554444.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000556565.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr6_-_26032288_26032337	0.214609	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr22_+_24951949_24951980	0.214293	GLI3	ENST00000402849.1|SNRPD3|ENSG00000100028.7|small nuclear ribonucleoprotein D3 polypeptide 18kDa
hg19_v2_chr19_+_49496782_49496873	0.213928	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chrX_+_23685653_23685681	0.213757	GLI3	ENST00000379331.3|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr5_-_162887054_162887067	0.213386	GLI3	ENST00000517501.1|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr14_+_75469606_75469690	0.212522	GLI3	ENST00000266126.5|EIF2B2|ENSG00000119718.6|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
hg19_v2_chr16_+_812506_812524	0.21206	GLI3	ENST00000569566.1|MSLN|ENSG00000102854.10|mesothelin
hg19_v2_chr17_+_77030267_77030391	0.211928	GLI3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr16_+_4526341_4526460	0.211505	GLI3	ENST00000458134.3|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000219700.6|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000575120.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000572812.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000574466.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000576827.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2 	ENST00000570445.1|HMOX2|ENSG00000103415.7|heme oxygenase (decycling) 2
hg19_v2_chr3_-_16554403_16554429	0.210056	GLI3	ENST00000449415.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1 	ENST00000441460.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1
hg19_v2_chr3_-_39196049_39196062	0.209366	GLI3	ENST00000514182.1|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr13_-_20767037_20767083	0.209096	GLI3	ENST00000382848.4|GJB2|ENSG00000165474.5|gap junction protein, beta 2, 26kDa
hg19_v2_chr1_+_36554470_36554519	0.208484	GLI3	ENST00000373178.4|ADPRHL2|ENSG00000116863.10|ADP-ribosylhydrolase like 2
hg19_v2_chr10_+_30722866_30722969	0.20838	GLI3	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr10_+_104404644_104404726	0.207511	GLI3	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr3_+_187871060_187871102	0.206659	GLI3	ENST00000448637.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr12_-_49581152_49581241	0.206465	GLI3	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr5_-_180242576_180242585	0.206373	GLI3	ENST00000514438.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr3_+_50388126_50388328	0.206088	GLI3	ENST00000425346.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000424512.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000232508.5|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000418577.1|CYB561D2|ENSG00000114395.6|cytochrome b561 family, member D2 	ENST00000606589.1|XXcos-LUCA11.5|ENSG00000272104.1|Uncharacterized protein
hg19_v2_chr11_-_65667884_65667895	0.205736	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chr1_+_43613612_43613623	0.205153	GLI3	ENST00000335282.4|FAM183A|ENSG00000186973.6|family with sequence similarity 183, member A
hg19_v2_chr15_-_42343388_42343388	0.204886	GLI3	ENST00000399518.3|PLA2G4E|ENSG00000188089.9|phospholipase A2, group IVE
hg19_v2_chr21_-_33984888_33984903	0.204801	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr20_-_1306351_1306367	0.204222	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr21_-_46348694_46348788	0.203567	GLI3	ENST00000355153.4|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397850.2|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr5_+_156569944_156570031	0.203564	GLI3	ENST00000521769.1|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr16_+_89787937_89787971	0.20317	GLI3	ENST00000443381.2|ZNF276|ENSG00000158805.7|zinc finger protein 276
hg19_v2_chr7_+_149412094_149412148	0.201874	GLI3	ENST00000255992.10|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1 	ENST00000319551.8|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr14_+_101293687_101293748	0.20158	GLI3	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr5_-_149792295_149792332	0.201481	GLI3	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr2_+_264913_264964	0.201202	GLI3	ENST00000439645.2|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000405233.1|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr4_-_177713788_177713881	0.199644	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr19_+_35491174_35491242	0.199461	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr16_-_2004683_2004727	0.199041	GLI3	ENST00000268661.7|RPL3L|ENSG00000140986.7|ribosomal protein L3-like
hg19_v2_chr1_+_67673297_67673349	0.198727	GLI3	ENST00000425614.1|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000395227.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr21_-_33984456_33984726	0.198113	GLI3	ENST00000431216.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000553001.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000440966.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr13_-_30683005_30683037	0.197748	GLI3	ENST00000413591.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365 	ENST00000432770.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365
hg19_v2_chr16_-_3767506_3767550	0.19733	GLI3	ENST00000538171.1|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr11_-_61646054_61646115	0.197064	GLI3	ENST00000527379.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr11_-_118927561_118927665	0.19704	GLI3	ENST00000530473.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr1_+_155278539_155278559	0.197035	GLI3	ENST00000447866.1|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr9_-_21368075_21368075	0.196572	GLI3	ENST00000449498.1|IFNA13|ENSG00000233816.2|interferon, alpha 13
hg19_v2_chr6_+_43739697_43739752	0.196311	GLI3	ENST00000230480.6|VEGFA|ENSG00000112715.16|vascular endothelial growth factor A
hg19_v2_chr11_+_73003824_73003859	0.194942	GLI3	ENST00000538328.1|P2RY6|ENSG00000171631.10|pyrimidinergic receptor P2Y, G-protein coupled, 6
hg19_v2_chr16_-_57798253_57798301	0.19388	GLI3	ENST00000565270.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr19_-_49121054_49121145	0.19343	GLI3	ENST00000546623.1|RPL18|ENSG00000063177.8|ribosomal protein L18 	ENST00000084795.5|RPL18|ENSG00000063177.8|ribosomal protein L18
hg19_v2_chr19_+_49999631_49999711	0.192343	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr15_+_89164560_89164601	0.192048	GLI3	ENST00000379231.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease 	ENST00000559528.1|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr16_-_1031259_1031327	0.19079	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr12_+_122667658_122667698	0.190384	GLI3	ENST00000339777.4|LRRC43|ENSG00000158113.8|leucine rich repeat containing 43 	ENST00000425921.1|LRRC43|ENSG00000158113.8|leucine rich repeat containing 43
hg19_v2_chr22_+_20008678_20008689	0.189791	GLI3	ENST00000434168.1|TANGO2|ENSG00000183597.11|transport and golgi organization 2 homolog (Drosophila)
hg19_v2_chr9_+_97021572_97021615	0.189623	GLI3	ENST00000395395.2|ZNF169|ENSG00000175787.12|zinc finger protein 169 	ENST00000340911.4|ZNF169|ENSG00000175787.12|zinc finger protein 169
hg19_v2_chr1_+_40420802_40420836	0.189312	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr3_+_88108381_88108450	0.189232	GLI3	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr19_+_676385_676403	0.188626	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr19_-_21512144_21512191	0.187593	GLI3	ENST00000602023.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr7_-_131241361_131241398	0.187397	GLI3	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chrX_+_51928002_51928017	0.186962	GLI3	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr2_-_264772_264829	0.186025	GLI3	ENST00000403658.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000402632.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000415368.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000454318.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1
hg19_v2_chr17_+_18647326_18647388	0.185999	GLI3	ENST00000395667.1|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000395665.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000308799.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000301938.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10
hg19_v2_chr17_-_7760457_7760587	0.184839	GLI3	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr9_-_116061145_116061145	0.184839	GLI3	ENST00000416588.2|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr3_+_127872265_127872344	0.184232	GLI3	ENST00000254730.6|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific 	ENST00000483457.1|EEFSEC|ENSG00000132394.6|eukaryotic elongation factor, selenocysteine-tRNA-specific
hg19_v2_chr20_+_3776371_3776506	0.184169	GLI3	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr16_-_89724051_89724062	0.183757	GLI3	ENST00000550102.1|CHMP1A|ENSG00000131165.10|charged multivesicular body protein 1A
hg19_v2_chr19_+_35491330_35491373	0.183705	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr1_-_6052463_6052542	0.183583	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr3_-_52739670_52739730	0.182698	GLI3	ENST00000497953.1|GLT8D1|ENSG00000016864.12|glycosyltransferase 8 domain containing 1
hg19_v2_chr19_+_45418067_45418126	0.182581	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr11_-_118927880_118927891	0.181852	GLI3	ENST00000527038.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr11_-_65640071_65640125	0.181591	GLI3	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr1_-_203273676_203273784	0.181127	GLI3	ENST00000425698.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr22_-_42765174_42765282	0.180677	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr17_+_80193644_80193654	0.179266	GLI3	ENST00000582946.1|SLC16A3|ENSG00000141526.10|solute carrier family 16 (monocarboxylate transporter), member 3
hg19_v2_chr17_-_18161870_18162084	0.178551	GLI3	ENST00000579294.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000545457.2|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000379450.4|FLII|ENSG00000177731.11|flightless I homolog (Drosophila) 	ENST00000578558.1|FLII|ENSG00000177731.11|flightless I homolog (Drosophila)
hg19_v2_chr18_+_5238549_5238665	0.178452	GLI3	ENST00000580684.1|LINC00667|ENSG00000263753.2|long intergenic non-protein coding RNA 667
hg19_v2_chr16_+_89894875_89894907	0.177933	GLI3	ENST00000393062.2|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr21_+_45905448_45905460	0.177081	GLI3	ENST00000449713.1|AP001065.15|ENSG00000228709.1|AP001065.15
hg19_v2_chr5_-_138842286_138842336	0.175997	GLI3	ENST00000515823.1|ECSCR|ENSG00000249751.1|endothelial cell surface expressed chemotaxis and apoptosis regulator
hg19_v2_chr19_+_7599597_7599642	0.175782	GLI3	ENST00000414982.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000450331.3|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr8_-_145653885_145653937	0.175762	GLI3	ENST00000531032.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000292510.4|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000377348.2|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000530790.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000533806.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr19_-_59066452_59066496	0.174725	GLI3	ENST00000312547.2|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr12_+_64846129_64846255	0.173729	GLI3	ENST00000540417.1|TBK1|ENSG00000183735.5|TANK-binding kinase 1 	ENST00000539810.1|TBK1|ENSG00000183735.5|TANK-binding kinase 1
hg19_v2_chr15_+_74287035_74287117	0.172803	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr3_-_9811595_9811666	0.17255	GLI3	ENST00000256460.3|CAMK1|ENSG00000134072.6|calcium/calmodulin-dependent protein kinase I
hg19_v2_chr5_-_150521192_150521229	0.171499	GLI3	ENST00000523714.1|ANXA6|ENSG00000197043.9|annexin A6 	ENST00000521749.1|ANXA6|ENSG00000197043.9|annexin A6
hg19_v2_chr22_+_39353527_39353623	0.171126	GLI3	ENST00000249116.2|APOBEC3A|ENSG00000128383.8|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
hg19_v2_chr19_-_2096478_2096672	0.171124	GLI3	ENST00000591236.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A 	ENST00000589902.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr14_+_72052983_72053003	0.170246	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr19_+_10216899_10217095	0.170151	GLI3	ENST00000428358.1|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000253107.7|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000556468.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila) 	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.2|PPAN-P2RY11 readthrough 	ENST00000393793.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr14_-_101295407_101295537	0.169866	GLI3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr1_-_156722015_156722034	0.169831	GLI3	ENST00000368209.5|HDGF|ENSG00000143321.14|hepatoma-derived growth factor
hg19_v2_chr15_-_60885287_60885325	0.169436	GLI3	ENST00000559343.1|RORA|ENSG00000069667.11|RAR-related orphan receptor A
hg19_v2_chr16_+_84209738_84209748	0.168925	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr3_-_127542051_127542098	0.168196	GLI3	ENST00000398104.1|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr19_+_7598890_7599090	0.167707	GLI3	ENST00000221249.6|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601668.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000601001.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr19_+_7745708_7745765	0.167244	GLI3	ENST00000596148.1|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5 	ENST00000317378.5|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5 	ENST00000426877.2|TRAPPC5|ENSG00000181029.7|trafficking protein particle complex 5
hg19_v2_chr5_-_179107975_179108039	0.167036	GLI3	ENST00000376974.4|CBY3|ENSG00000204659.4|chibby homolog 3 (Drosophila)
hg19_v2_chr1_-_1310530_1310603	0.166546	GLI3	ENST00000338370.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000321751.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1 	ENST00000378853.3|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr6_-_159420780_159420872	0.165549	GLI3	ENST00000449822.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chrX_-_115594160_115594172	0.165439	GLI3	ENST00000371894.4|CXorf61|ENSG00000204019.4|cancer/testis antigen 83
hg19_v2_chr10_+_124214164_124214184	0.16511	GLI3	ENST00000528446.1|ARMS2|ENSG00000254636.1|age-related maculopathy susceptibility 2
hg19_v2_chr19_+_36208877_36208921	0.16505	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chr6_-_43478239_43478424	0.164896	GLI3	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr3_-_127542021_127542050	0.164304	GLI3	ENST00000434178.2|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr17_-_73851285_73851501	0.1641	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr11_+_114168085_114168222	0.16346	GLI3	ENST00000541754.1|NNMT|ENSG00000166741.3|nicotinamide N-methyltransferase
hg19_v2_chr22_+_22764088_22764105	0.162936	GLI3	ENST00000390299.2|IGLV1-40|ENSG00000211653.2|immunoglobulin lambda variable 1-40
hg19_v2_chr21_-_46330545_46330741	0.162611	GLI3	ENST00000320216.6|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397852.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr7_-_45026200_45026273	0.162442	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr10_+_135192695_135192780	0.161359	GLI3	ENST00000368539.4|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000278060.5|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino) 	ENST00000357296.3|PAOX|ENSG00000148832.10|polyamine oxidase (exo-N4-amino)
hg19_v2_chr11_-_88070920_88070955	0.159743	GLI3	ENST00000524463.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000227266.5|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr1_+_15479054_15479073	0.159695	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr12_+_112191694_112191694	0.159547	GLI3	ENST00000546840.2|RP11-162P23.2|ENSG00000257767.2|RP11-162P23.2
hg19_v2_chr1_-_55266865_55266876	0.15884	GLI3	ENST00000371274.4|TTC22|ENSG00000006555.6|tetratricopeptide repeat domain 22
hg19_v2_chr12_+_57984943_57984964	0.158837	GLI3	ENST00000422156.3|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr11_-_61658853_61658932	0.157708	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr11_+_117070904_117070971	0.157574	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr17_-_13505219_13505299	0.157345	GLI3	ENST00000284110.1|HS3ST3A1|ENSG00000153976.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
hg19_v2_chr1_+_209941827_209941837	0.157046	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr20_+_3776936_3776964	0.155051	GLI3	ENST00000439880.2|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr3_+_184081175_184081208	0.154653	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr6_+_30689350_30689366	0.154565	GLI3	ENST00000330914.3|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr1_-_243418650_243418664	0.154122	GLI3	ENST00000522995.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr20_-_62258394_62258464	0.154067	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr11_+_68451943_68451986	0.153923	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr11_+_89764274_89764274	0.153609	GLI3	ENST00000448984.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C 	ENST00000432771.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C
hg19_v2_chr7_+_90032821_90032881	0.153472	GLI3	ENST00000427904.1|CLDN12|ENSG00000157224.11|claudin 12
hg19_v2_chr2_+_228736335_228736397	0.153471	GLI3	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr19_-_21512115_21512138	0.152066	GLI3	ENST00000601295.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr7_+_102290772_102290772	0.15206	GLI3	ENST00000507450.1|SPDYE2B|ENSG00000173678.10|speedy/RINGO cell cycle regulator family member E2B
hg19_v2_chr11_-_2170786_2170833	0.152036	GLI3	ENST00000300632.5|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr17_-_73840614_73840645	0.15193	GLI3	ENST00000586108.1|UNC13D|ENSG00000092929.7|unc-13 homolog D (C. elegans)
hg19_v2_chr7_-_108097144_108097175	0.151729	GLI3	ENST00000418239.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr19_-_13947099_13947104	0.15169	GLI3	ENST00000587762.1|MIR24-2|ENSG00000267519.2|microRNA 24-2
hg19_v2_chr4_-_57524061_57524074	0.151488	GLI3	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr19_-_30199516_30199555	0.15096	GLI3	ENST00000591243.1|C19orf12|ENSG00000131943.13|chromosome 19 open reading frame 12
hg19_v2_chr17_-_1029052_1029090	0.150775	GLI3	ENST00000574437.1|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr3_+_46204959_46205096	0.150505	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr5_+_10250328_10250362	0.149913	GLI3	ENST00000515390.1|CCT5|ENSG00000150753.7|chaperonin containing TCP1, subunit 5 (epsilon)
hg19_v2_chr16_+_77233294_77233341	0.149853	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr1_+_183155373_183155423	0.149632	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr8_+_124194875_124194921	0.149417	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr12_+_57984965_57985059	0.149248	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr16_+_30194293_30194308	0.148696	GLI3	ENST00000561815.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr6_-_167040693_167040725	0.148424	GLI3	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr3_-_169482840_169482855	0.14814	GLI3	ENST00000602385.1|TERC|ENSG00000270141.2|telomerase RNA component
hg19_v2_chr5_+_149340339_149340358	0.14758	GLI3	ENST00000433184.1|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr8_-_67525524_67525543	0.147424	GLI3	ENST00000517885.1|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr8_+_22857048_22857092	0.147055	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr1_+_209757051_209757074	0.146892	GLI3	ENST00000009105.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000423146.1|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG 	ENST00000361322.2|CAMK1G|ENSG00000008118.5|calcium/calmodulin-dependent protein kinase IG
hg19_v2_chr9_-_72435576_72435655	0.146655	GLI3	ENST00000453410.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000526458.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000439418.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head)
hg19_v2_chr19_-_19281054_19281098	0.1464	GLI3	ENST00000424583.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000410050.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409224.1|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B 	ENST00000409447.2|MEF2B|ENSG00000213999.11|myocyte enhancer factor 2B
hg19_v2_chrX_+_52780318_52780346	0.146338	GLI3	ENST00000375515.3|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B 	ENST00000276049.6|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B
hg19_v2_chr9_-_132404374_132404450	0.146074	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr17_-_47286729_47286764	0.145946	GLI3	ENST00000300406.2|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511277.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511673.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr7_-_128045984_128046026	0.145802	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr19_+_35629702_35629742	0.145008	GLI3	ENST00000351325.4|FXYD1|ENSG00000266964.1|FXYD domain containing ion transport regulator 1
hg19_v2_chr17_+_73629500_73629532	0.14483	GLI3	ENST00000375215.3|SMIM5|ENSG00000204323.5|small integral membrane protein 5
hg19_v2_chr11_-_128457446_128457461	0.14472	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr10_-_135171510_135171544	0.144663	GLI3	ENST00000278025.4|FUOM|ENSG00000148803.7|fucose mutarotase 	ENST00000368552.3|FUOM|ENSG00000148803.7|fucose mutarotase
hg19_v2_chr8_-_144890847_144890847	0.144385	GLI3	ENST00000531942.1|SCRIB|ENSG00000180900.12|scribbled planar cell polarity protein
hg19_v2_chr7_-_99680171_99680204	0.144026	GLI3	ENST00000428683.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr19_-_59070239_59070359	0.143656	GLI3	ENST00000595957.1|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M 	ENST00000253023.3|UBE2M|ENSG00000130725.3|ubiquitin-conjugating enzyme E2M
hg19_v2_chr15_+_75498355_75498390	0.143627	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr19_+_35417939_35417963	0.143052	GLI3	ENST00000601142.1|ZNF30|ENSG00000168661.10|zinc finger protein 30 	ENST00000426813.2|ZNF30|ENSG00000168661.10|zinc finger protein 30
hg19_v2_chr6_-_29600832_29600982	0.142747	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr12_-_111806892_111806925	0.142355	GLI3	ENST00000547710.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000549321.1|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000361483.3|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A 	ENST00000392658.5|FAM109A|ENSG00000198324.10|family with sequence similarity 109, member A
hg19_v2_chr19_+_45349630_45349783	0.142349	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr17_+_73996987_73996987	0.142331	GLI3	ENST00000588812.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3 	ENST00000448471.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3
hg19_v2_chr8_-_145652336_145652378	0.141704	GLI3	ENST00000529182.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae) 	ENST00000526054.1|VPS28|ENSG00000160948.9|vacuolar protein sorting 28 homolog (S. cerevisiae)
hg19_v2_chr7_+_44240520_44240652	0.141623	GLI3	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr17_+_61473104_61473104	0.141316	GLI3	ENST00000583016.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chrX_+_70364667_70364721	0.141058	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr17_-_79481666_79481785	0.141045	GLI3	ENST00000575659.1|ACTG1|ENSG00000184009.5|actin, gamma 1
hg19_v2_chr16_-_3767551_3767598	0.140615	GLI3	ENST00000246957.5|TRAP1|ENSG00000126602.6|TNF receptor-associated protein 1
hg19_v2_chr7_-_100860851_100860954	0.140211	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chrX_-_130037162_130037190	0.139944	GLI3	ENST00000432489.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr13_-_20806440_20806534	0.139833	GLI3	ENST00000400066.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000400065.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000356192.6|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa
hg19_v2_chrX_-_52736211_52736239	0.139516	GLI3	ENST00000336777.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2 	ENST00000337502.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2
hg19_v2_chr16_+_88923494_88923576	0.13926	GLI3	ENST00000567895.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000301021.3|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000565504.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000567312.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000568583.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like 	ENST00000561840.1|TRAPPC2L|ENSG00000167515.6|trafficking protein particle complex 2-like
hg19_v2_chr16_+_27279526_27279526	0.13913	GLI3	ENST00000566854.1|CTD-3203P2.2|ENSG00000245888.2|HCG1815999; Uncharacterized protein
hg19_v2_chr1_-_41487383_41487402	0.138999	GLI3	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr19_-_54619006_54619055	0.138931	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr11_+_576494_576521	0.138904	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr16_+_30064411_30064428	0.138873	GLI3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr3_+_9850199_9850239	0.137939	GLI3	ENST00000452597.1|TTLL3|ENSG00000214021.11|tubulin tyrosine ligase-like family, member 3
hg19_v2_chr19_-_2085323_2085391	0.137917	GLI3	ENST00000591638.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr16_-_88717423_88717469	0.13745	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr9_+_8858102_8858147	0.137079	GLI3	ENST00000447950.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1	ENST00000430766.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1
hg19_v2_chr7_-_2883928_2883993	0.136881	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr3_-_195538760_195538775	0.136836	GLI3	ENST00000475231.1|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr16_-_57837129_57837170	0.136786	GLI3	ENST00000562984.1|KIFC3|ENSG00000140859.11|kinesin family member C3 	ENST00000564891.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr21_-_32716556_32716609	0.136686	GLI3	ENST00000455508.1|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr1_+_36621529_36621585	0.136631	GLI3	ENST00000316156.4|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr11_+_89867803_89867906	0.136244	GLI3	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr6_-_30815936_30816035	0.136045	GLI3	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr2_+_232573208_232573219	0.135702	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr11_-_65640198_65640281	0.135266	GLI3	ENST00000528176.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr21_-_35340759_35340874	0.134843	GLI3	ENST00000607953.1|AP000569.9|ENSG00000273102.1|AP000569.9
hg19_v2_chr18_+_77623668_77623668	0.134709	GLI3	ENST00000316249.3|KCNG2|ENSG00000178342.4|potassium voltage-gated channel, subfamily G, member 2
hg19_v2_chr9_-_139334247_139334302	0.134673	GLI3	ENST00000371712.3|INPP5E|ENSG00000148384.11|inositol polyphosphate-5-phosphatase, 72 kDa
hg19_v2_chr9_-_95896550_95896570	0.134372	GLI3	ENST00000375446.4|NINJ1|ENSG00000131669.5|ninjurin 1
hg19_v2_chr11_-_118927735_118927766	0.13436	GLI3	ENST00000526656.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr12_-_49523896_49524032	0.134188	GLI3	ENST00000549870.1|TUBA1B|ENSG00000123416.11|tubulin, alpha 1b
hg19_v2_chr11_-_118927816_118927868	0.134016	GLI3	ENST00000534233.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532752.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000525859.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000404233.3|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532421.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000543287.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000527310.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000529972.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr21_-_37432764_37432831	0.133934	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr20_+_18118703_18118767	0.133624	GLI3	ENST00000464792.1|CSRP2BP|ENSG00000149474.9|CSRP2 binding protein
hg19_v2_chr1_+_11866207_11866268	0.133576	GLI3	ENST00000312413.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000346436.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr4_-_7069760_7069924	0.133152	GLI3	ENST00000264954.4|GRPEL1|ENSG00000109519.8|GrpE-like 1, mitochondrial (E. coli)
hg19_v2_chr16_+_30064444_30064528	0.132506	GLI3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr8_+_145218673_145218673	0.132422	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr17_+_7487146_7487211	0.132118	GLI3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chr7_+_150065278_150065369	0.131911	GLI3	ENST00000519397.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000479668.1|REPIN1|ENSG00000214022.7|replication initiator 1 	ENST00000540729.1|REPIN1|ENSG00000214022.7|replication initiator 1
hg19_v2_chr8_-_135708787_135708805	0.131794	GLI3	ENST00000520356.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520727.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000520214.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000518191.1|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing 	ENST00000429442.2|ZFAT|ENSG00000066827.11|zinc finger and AT hook domain containing
hg19_v2_chr17_-_62502639_62502849	0.1314	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr20_+_35974532_35974557	0.130938	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chr10_-_135116364_135116485	0.130231	GLI3	ENST00000252936.3|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2 	ENST00000543663.1|TUBGCP2|ENSG00000130640.9|tubulin, gamma complex associated protein 2
hg19_v2_chr11_-_65629497_65629528	0.130226	GLI3	ENST00000532134.1|CFL1|ENSG00000172757.8|cofilin 1 (non-muscle)
hg19_v2_chr9_-_113800341_113800373	0.130105	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr16_-_2059797_2059837	0.130042	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr17_-_18907463_18907551	0.129997	GLI3	ENST00000585154.2|FAM83G|ENSG00000188522.10|family with sequence similarity 83, member G 	ENST00000345041.4|FAM83G|ENSG00000188522.10|family with sequence similarity 83, member G
hg19_v2_chr18_+_21594384_21594539	0.129934	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr19_+_54705025_54705034	0.129484	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chr1_+_15480197_15480285	0.129143	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chrX_+_19362011_19362122	0.128974	GLI3	ENST00000379806.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000545074.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000540249.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000423505.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000417819.1|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000422285.2|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000355808.5|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1 	ENST00000379805.3|PDHA1|ENSG00000131828.9|pyruvate dehydrogenase (lipoamide) alpha 1
hg19_v2_chr5_-_157002775_157002790	0.128893	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr19_-_4722780_4722790	0.128773	GLI3	ENST00000600621.1|DPP9|ENSG00000142002.12|dipeptidyl-peptidase 9
hg19_v2_chr12_-_54582655_54582780	0.128521	GLI3	ENST00000504338.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514685.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000504797.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000513838.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000505128.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000337581.3|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000503306.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000243112.5|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000514196.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000506169.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000507904.1|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1 	ENST00000508394.2|SMUG1|ENSG00000123415.10|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg19_v2_chr18_+_3451646_3451722	0.128473	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr19_+_44084696_44084790	0.128258	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr6_-_109776901_109776994	0.128101	GLI3	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr17_+_40118805_40118900	0.128069	GLI3	ENST00000591072.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000587679.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000393888.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase 	ENST00000441615.2|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr1_+_150954493_150954528	0.12773	GLI3	ENST00000368947.4|ANXA9|ENSG00000143412.5|annexin A9
hg19_v2_chr2_+_242498135_242498136	0.127375	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr12_-_108991778_108991800	0.126966	GLI3	ENST00000549447.1|TMEM119|ENSG00000183160.8|transmembrane protein 119
hg19_v2_chr6_-_167040731_167040745	0.126819	GLI3	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr22_+_24990746_24990781	0.12675	GLI3	ENST00000456869.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000411974.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr16_-_2318373_2318414	0.126353	GLI3	ENST00000566458.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000320225.5|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr19_+_45417504_45417589	0.125944	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr20_+_62666902_62667016	0.125165	GLI3	ENST00000431158.1|LINC00176|ENSG00000196421.3|long intergenic non-protein coding RNA 176
hg19_v2_chr1_-_38273840_38273888	0.125	GLI3	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chr5_-_68339648_68339711	0.124967	GLI3	ENST00000479830.2|CTC-498J12.1|ENSG00000250237.1|CTC-498J12.1
hg19_v2_chr4_+_62067860_62067900	0.124787	GLI3	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr7_-_6570817_6570859	0.124631	GLI3	ENST00000435185.1|GRID2IP|ENSG00000215045.4|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein
hg19_v2_chr11_+_64009072_64009220	0.124313	GLI3	ENST00000535135.1|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa 	ENST00000394540.3|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa
hg19_v2_chrX_-_1656000_1656043	0.124292	GLI3	ENST00000381297.4|P2RY8|ENSG00000182162.5|purinergic receptor P2Y, G-protein coupled, 8
hg19_v2_chr16_+_84224740_84224746	0.124174	GLI3	ENST00000268624.3|ADAD2|ENSG00000140955.6|adenosine deaminase domain containing 2
hg19_v2_chr6_+_116601330_116601381	0.124003	GLI3	ENST00000449314.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1	ENST00000453463.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1
hg19_v2_chr22_+_25595817_25595840	0.123566	GLI3	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr21_-_47613673_47613673	0.123553	GLI3	ENST00000594486.1|AP001468.1|ENSG00000235878.4|Protein LOC101060037
hg19_v2_chr16_+_68679193_68679253	0.123346	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr3_-_53080644_53080670	0.122913	GLI3	ENST00000497586.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr6_-_110736742_110736782	0.122843	GLI3	ENST00000368924.3|DDO|ENSG00000203797.5|D-aspartate oxidase 	ENST00000368923.3|DDO|ENSG00000203797.5|D-aspartate oxidase
hg19_v2_chr12_-_10542617_10542647	0.122747	GLI3	ENST00000240618.6|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr4_+_77177512_77177606	0.122625	GLI3	ENST00000606246.1|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr1_+_150521876_150521901	0.122529	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr6_-_31763721_31763734	0.122442	GLI3	ENST00000375663.3|VARS|ENSG00000204394.8|valyl-tRNA synthetase
hg19_v2_chr5_+_140044261_140044464	0.12207	GLI3	ENST00000358337.5|WDR55|ENSG00000120314.14|WD repeat domain 55
hg19_v2_chr1_+_11866270_11866317	0.120389	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr22_+_46663895_46663937	0.119701	GLI3	ENST00000421359.1|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38
hg19_v2_chr16_+_30212050_30212050	0.118996	GLI3	ENST00000563322.1|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chr19_+_35759968_35760042	0.118758	GLI3	ENST00000222305.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000595068.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000379134.3|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000594064.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting 	ENST00000598058.1|USF2|ENSG00000105698.11|upstream transcription factor 2, c-fos interacting
hg19_v2_chr19_+_37837218_37837258	0.118634	GLI3	ENST00000591134.1|HKR1|ENSG00000181666.13|HKR1, GLI-Kruppel zinc finger family member
hg19_v2_chrX_-_53254358_53254406	0.118134	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr5_+_6633456_6633529	0.11807	GLI3	ENST00000274192.5|SRD5A1|ENSG00000145545.7|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)
hg19_v2_chr9_-_98079965_98080008	0.11803	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr2_-_74779744_74779774	0.11786	GLI3	ENST00000409249.1|LOXL3|ENSG00000115318.7|lysyl oxidase-like 3
hg19_v2_chr1_-_155942086_155942145	0.117801	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr11_-_2160180_2160257	0.117405	GLI3	ENST00000381406.4|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chr3_+_239652_239708	0.117121	GLI3	ENST00000435603.1|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr2_+_192109911_192110170	0.116414	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr8_-_29120604_29120633	0.116335	GLI3	ENST00000521515.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr17_+_27071002_27071103	0.116321	GLI3	ENST00000262395.5|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000422344.1|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000444415.3|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000262396.6|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4
hg19_v2_chr19_+_4969116_4969143	0.116205	GLI3	ENST00000588337.1|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000159111.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B 	ENST00000381759.4|KDM4B|ENSG00000127663.10|lysine (K)-specific demethylase 4B
hg19_v2_chr11_+_2415061_2415109	0.116069	GLI3	ENST00000481687.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chr4_+_40194609_40194616	0.115717	GLI3	ENST00000508513.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr22_+_25003606_25003622	0.115657	GLI3	ENST00000432867.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr2_+_232826211_232826293	0.115504	GLI3	ENST00000325385.7|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2 	ENST00000360410.4|DIS3L2|ENSG00000144535.15|DIS3 mitotic control homolog (S. cerevisiae)-like 2
hg19_v2_chr1_-_206671061_206671061	0.114957	GLI3	ENST00000367119.1|C1orf147|ENSG00000162888.4|chromosome 1 open reading frame 147
hg19_v2_chr19_-_54693146_54693249	0.114785	GLI3	ENST00000414665.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7 	ENST00000453320.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr16_-_18801582_18801630	0.114646	GLI3	ENST00000565420.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chrX_+_49020121_49020334	0.114499	GLI3	ENST00000415364.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000376338.3|MAGIX|ENSG00000017621.11|MAGI family member, X-linked 	ENST00000425285.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr22_+_25003626_25003645	0.114417	GLI3	ENST00000451366.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000406383.2|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1 	ENST00000428855.1|GGT1|ENSG00000100031.14|gamma-glutamyltransferase 1
hg19_v2_chr12_-_122750957_122751001	0.114165	GLI3	ENST00000451053.2|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr3_+_11314072_11314098	0.113861	GLI3	ENST00000444619.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr20_-_6103666_6103737	0.11369	GLI3	ENST00000536936.1|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr21_-_33985127_33985191	0.1133	GLI3	ENST00000290155.3|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr5_+_167956121_167956121	0.113123	GLI3	ENST00000338333.4|FBLL1|ENSG00000188573.7|fibrillarin-like 1
hg19_v2_chr19_-_11494975_11495003	0.113093	GLI3	ENST00000222139.6|EPOR|ENSG00000187266.9|erythropoietin receptor 	ENST00000592375.2|EPOR|ENSG00000187266.9|erythropoietin receptor
hg19_v2_chr21_-_35288284_35288284	0.112943	GLI3	ENST00000290299.2|ATP5O|ENSG00000241837.2|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
hg19_v2_chr15_+_49462397_49462430	0.112807	GLI3	ENST00000396509.2|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr16_+_29818857_29819023	0.11253	GLI3	ENST00000567444.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr4_+_79567057_79567159	0.112273	GLI3	ENST00000503259.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000507802.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr10_+_134145614_134145724	0.111998	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr9_-_34637718_34637791	0.111961	GLI3	ENST00000378892.1|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1 	ENST00000277010.4|SIGMAR1|ENSG00000147955.12|sigma non-opioid intracellular receptor 1
hg19_v2_chr16_-_2059748_2059777	0.111791	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr16_+_84682108_84682218	0.111457	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr11_-_73587719_73588033	0.111378	GLI3	ENST00000545127.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000537289.1|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae) 	ENST00000355693.4|COA4|ENSG00000181924.6|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)
hg19_v2_chr1_-_157108266_157108347	0.11134	GLI3	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr7_-_767249_767307	0.111337	GLI3	ENST00000403562.1|PRKAR1B|ENSG00000188191.10|protein kinase, cAMP-dependent, regulatory, type I, beta
hg19_v2_chr11_+_124735282_124735332	0.110971	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr7_-_47578840_47578876	0.110967	GLI3	ENST00000450444.1|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr19_-_11616645_11616738	0.110895	GLI3	ENST00000293771.5|ZNF653|ENSG00000161914.5|zinc finger protein 653
hg19_v2_chr19_+_17448348_17448406	0.110722	GLI3	ENST00000324894.8|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000358792.7|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial) 	ENST00000600625.1|GTPBP3|ENSG00000130299.12|GTP binding protein 3 (mitochondrial)
hg19_v2_chr3_-_88108212_88108223	0.110513	GLI3	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr12_-_50101165_50101259	0.110326	GLI3	ENST00000352151.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000335154.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000293590.5|FMNL3|ENSG00000161791.9|formin-like 3
hg19_v2_chr17_-_39928501_39928521	0.110098	GLI3	ENST00000420370.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr11_+_10477733_10477831	0.109705	GLI3	ENST00000528723.1|AMPD3|ENSG00000133805.11|adenosine monophosphate deaminase 3
hg19_v2_chr21_-_44035168_44035183	0.109698	GLI3	ENST00000419628.1|AP001626.1|ENSG00000225431.1|AP001626.1
hg19_v2_chr11_-_568369_568457	0.109684	GLI3	ENST00000534540.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000528245.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000500447.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding) 	ENST00000533920.1|MIR210HG|ENSG00000247095.2|MIR210 host gene (non-protein coding)
hg19_v2_chr1_-_155177677_155177739	0.10938	GLI3	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr17_-_80009209_80009449	0.10937	GLI3	ENST00000429557.3|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 	ENST00000578356.1|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chr8_-_41655107_41655159	0.109309	GLI3	ENST00000347528.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000289734.7|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000379758.2|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396945.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000396942.1|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic 	ENST00000352337.4|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr19_+_41816053_41816178	0.109245	GLI3	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr20_+_3777078_3777093	0.109156	GLI3	ENST00000340833.4|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr17_-_17942473_17942523	0.108868	GLI3	ENST00000585101.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000474627.3|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2 	ENST00000444058.1|ATPAF2|ENSG00000171953.11|ATP synthase mitochondrial F1 complex assembly factor 2
hg19_v2_chr10_-_49701686_49701697	0.108274	GLI3	ENST00000417247.2|ARHGAP22|ENSG00000128805.10|Rho GTPase activating protein 22
hg19_v2_chr6_+_31371337_31371449	0.107784	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr1_+_44440575_44440646	0.107697	GLI3	ENST00000532642.1|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000236067.4|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b 	ENST00000471859.2|ATP6V0B|ENSG00000117410.9|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
hg19_v2_chr1_+_202995611_202995680	0.107669	GLI3	ENST00000367240.2|PPFIA4|ENSG00000143847.11|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
hg19_v2_chr16_+_27324983_27324996	0.107278	GLI3	ENST00000566117.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr16_-_89556942_89557020	0.107085	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr22_+_51176624_51176663	0.106601	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr15_+_91478493_91478551	0.106119	GLI3	ENST00000418476.2|UNC45A|ENSG00000140553.12|unc-45 homolog A (C. elegans)
hg19_v2_chr17_-_7531121_7531198	0.105989	GLI3	ENST00000573566.1|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2 	ENST00000269298.5|SAT2|ENSG00000141504.7|spermidine/spermine N1-acetyltransferase family member 2
hg19_v2_chr10_-_81965307_81965351	0.105968	GLI3	ENST00000537102.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000372231.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000438331.1|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000422982.3|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000360615.4|ANXA11|ENSG00000122359.13|annexin A11 	ENST00000265447.4|ANXA11|ENSG00000122359.13|annexin A11
hg19_v2_chr5_-_137090028_137090075	0.105827	GLI3	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr20_+_61147651_61147666	0.10558	GLI3	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr11_-_65640325_65640377	0.105498	GLI3	ENST00000307998.6|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr16_+_89894911_89894955	0.105324	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr3_-_12705600_12705725	0.105244	GLI3	ENST00000542177.1|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000442415.2|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1 	ENST00000251849.4|RAF1|ENSG00000132155.7|v-raf-1 murine leukemia viral oncogene homolog 1
hg19_v2_chr1_+_11724167_11724197	0.105168	GLI3	ENST00000376753.4|FBXO6|ENSG00000116663.6|F-box protein 6
hg19_v2_chr8_-_61880248_61880334	0.105047	GLI3	ENST00000525556.1|AC022182.3|ENSG00000254802.1|AC022182.3
hg19_v2_chr19_+_48281803_48281829	0.104241	GLI3	ENST00000601048.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr5_-_138739739_138739793	0.104136	GLI3	ENST00000514983.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000507779.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000451821.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000450845.2|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000509959.1|SPATA24|ENSG00000170469.6|spermatogenesis associated 24 	ENST00000302091.5|SPATA24|ENSG00000170469.6|spermatogenesis associated 24
hg19_v2_chr9_-_113800317_113800328	0.103967	GLI3	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr7_+_42971799_42971988	0.103745	GLI3	ENST00000223324.2|MRPL32|ENSG00000106591.3|mitochondrial ribosomal protein L32
hg19_v2_chr10_+_88718397_88718424	0.103701	GLI3	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr17_+_36873677_36873800	0.103578	GLI3	ENST00000471200.1|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr9_+_131102925_131103015	0.103346	GLI3	ENST00000372870.1|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4 	ENST00000300456.4|SLC27A4|ENSG00000167114.8|solute carrier family 27 (fatty acid transporter), member 4
hg19_v2_chr20_-_6104191_6104228	0.103222	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr11_-_115630900_115630923	0.103182	GLI3	ENST00000537070.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000499809.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000514294.2|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900 	ENST00000535683.1|LINC00900|ENSG00000246100.3|long intergenic non-protein coding RNA 900
hg19_v2_chr17_+_15848231_15848231	0.103083	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr15_+_41186609_41186636	0.103043	GLI3	ENST00000220509.5|VPS18|ENSG00000104142.6|vacuolar protein sorting 18 homolog (S. cerevisiae)
hg19_v2_chr9_-_34458531_34458582	0.102901	GLI3	ENST00000379089.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379087.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379084.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379081.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379080.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000422409.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000379078.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000445726.1|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A 	ENST00000297620.4|FAM219A|ENSG00000164970.10|family with sequence similarity 219, member A
hg19_v2_chr11_-_65641044_65641083	0.102503	GLI3	ENST00000527378.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr16_-_18801643_18801705	0.102445	GLI3	ENST00000322989.4|RPS15A|ENSG00000134419.11|ribosomal protein S15a 	ENST00000563390.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr21_-_46964306_46964332	0.102211	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr1_+_165864821_165864850	0.102135	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr13_-_52733980_52734002	0.10199	GLI3	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr21_+_34804479_34804626	0.101633	GLI3	ENST00000421802.1|IFNGR2|ENSG00000159128.10|interferon gamma receptor 2 (interferon gamma transducer 1)
hg19_v2_chr12_-_125348448_125348472	0.101598	GLI3	ENST00000339570.5|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr12_+_120933904_120933923	0.101314	GLI3	ENST00000550178.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000550845.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549989.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000552870.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr5_-_43483929_43484002	0.10125	GLI3	ENST00000500337.2|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000506860.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000510130.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000397080.3|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000512085.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28
hg19_v2_chr20_+_32319463_32319463	0.101217	GLI3	ENST00000342427.2|ZNF341|ENSG00000131061.9|zinc finger protein 341 	ENST00000375200.1|ZNF341|ENSG00000131061.9|zinc finger protein 341
hg19_v2_chr2_-_85636928_85636955	0.100451	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr19_-_46145696_46145820	0.100414	GLI3	ENST00000588172.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr15_+_29211570_29211611	0.100389	GLI3	ENST00000558804.1|APBA2|ENSG00000034053.10|amyloid beta (A4) precursor protein-binding, family A, member 2
hg19_v2_chr17_-_80231557_80231607	0.100327	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr1_+_44399347_44399444	0.100238	GLI3	ENST00000477048.1|ARTN|ENSG00000117407.12|artemin 	ENST00000471394.2|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr3_-_53080047_53080103	0.0999749	GLI3	ENST00000482396.1|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000358080.2|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000296295.6|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1 	ENST00000394752.3|SFMBT1|ENSG00000163935.9|Scm-like with four mbt domains 1
hg19_v2_chr15_+_49462434_49462488	0.0999608	GLI3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr19_-_10679644_10679661	0.0997177	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr17_-_4090402_4090406	0.0993644	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr9_+_132962843_132962872	0.0991425	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr9_+_131219250_131219275	0.0990931	GLI3	ENST00000470061.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr20_-_50808236_50808264	0.0989721	GLI3	ENST00000361387.2|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr2_+_192110199_192110254	0.0989312	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr15_+_74287118_74287144	0.0985973	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr7_-_99679324_99679371	0.0983687	GLI3	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr5_+_52083730_52083821	0.098261	GLI3	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr17_+_39421591_39421591	0.0982227	GLI3	ENST00000391355.1|KRTAP9-6|ENSG00000212659.1|keratin associated protein 9-6
hg19_v2_chr6_-_109777128_109777203	0.0982138	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr18_+_3448455_3448497	0.0981768	GLI3	ENST00000549780.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr19_+_3721719_3721744	0.0977568	GLI3	ENST00000589378.1|TJP3|ENSG00000105289.10|tight junction protein 3 	ENST00000382008.3|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr19_+_3708376_3708501	0.0977329	GLI3	ENST00000539908.2|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr22_+_31892261_31892278	0.0976255	GLI3	ENST00000432498.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000540643.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000443326.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000414585.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr5_-_43412418_43412499	0.0973483	GLI3	ENST00000537013.1|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28 	ENST00000361115.4|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28
hg19_v2_chr9_+_131873842_131873967	0.097174	GLI3	ENST00000417728.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr1_+_36621174_36621191	0.0965	GLI3	ENST00000429533.2|MAP7D1|ENSG00000116871.11|MAP7 domain containing 1
hg19_v2_chr3_+_47844399_47844457	0.0963901	GLI3	ENST00000446256.2|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30 	ENST00000445061.1|DHX30|ENSG00000132153.10|DEAH (Asp-Glu-Ala-His) box helicase 30
hg19_v2_chr3_-_14166316_14166383	0.0962608	GLI3	ENST00000396914.3|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4 	ENST00000295767.5|CHCHD4|ENSG00000163528.8|coiled-coil-helix-coiled-coil-helix domain containing 4
hg19_v2_chr19_+_39897453_39897498	0.0961941	GLI3	ENST00000597629.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000248673.3|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594045.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594442.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein
hg19_v2_chr19_-_51522955_51523020	0.095962	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr11_+_66025167_66025190	0.0959331	GLI3	ENST00000394067.2|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000316924.5|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000421552.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000394078.1|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr1_+_36789335_36789335	0.0959149	GLI3	ENST00000373137.2|RP11-268J15.5|ENSG00000116883.8|RP11-268J15.5
hg19_v2_chr2_+_232573222_232573249	0.0958767	GLI3	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr19_+_58740266_58740341	0.0958745	GLI3	ENST00000597240.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000594384.1|ZNF544|ENSG00000198131.9|zinc finger protein 544 	ENST00000596825.1|ZNF544|ENSG00000198131.9|zinc finger protein 544
hg19_v2_chr16_+_68678739_68678833	0.0957961	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr5_-_58571935_58571951	0.0955528	GLI3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr3_-_123123407_123123440	0.095501	GLI3	ENST00000466617.1|ADCY5|ENSG00000173175.10|adenylate cyclase 5
hg19_v2_chr3_+_11314099_11314122	0.0954213	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr19_+_10217270_10217321	0.0953463	GLI3	ENST00000446223.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr3_+_238456_238502	0.0953451	GLI3	ENST00000427688.1|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr17_-_3461092_3461126	0.0951857	GLI3	ENST00000301365.4|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3 	ENST00000572519.1|TRPV3|ENSG00000167723.10|transient receptor potential cation channel, subfamily V, member 3
hg19_v2_chr20_+_18118486_18118525	0.0950131	GLI3	ENST00000432901.3|PET117|ENSG00000232838.3|PET117 homolog (S. cerevisiae)
hg19_v2_chr9_-_123676827_123676865	0.0947415	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr5_-_157002749_157002768	0.0943523	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr11_-_110968081_110968109	0.0942098	GLI3	ENST00000603154.1|RP11-89C3.4|ENSG00000271584.1|RP11-89C3.4
hg19_v2_chr19_+_49713991_49714040	0.0936811	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.11|transient receptor potential cation channel, subfamily M, member 4
hg19_v2_chr1_-_155225178_155225225	0.0935663	GLI3	ENST00000361361.2|FAM189B|ENSG00000160767.16|family with sequence similarity 189, member B
hg19_v2_chr10_+_105156364_105156448	0.0935289	GLI3	ENST00000369797.3|PDCD11|ENSG00000148843.9|programmed cell death 11
hg19_v2_chr15_-_72523454_72523684	0.093436	GLI3	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr20_+_34894247_34894279	0.0928427	GLI3	ENST00000373913.3|DLGAP4|ENSG00000080845.13|discs, large (Drosophila) homolog-associated protein 4
hg19_v2_chr12_+_57854274_57854274	0.0926963	GLI3	ENST00000528432.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr19_-_35166604_35166604	0.092622	GLI3	ENST00000601241.1|SCGB2B2|ENSG00000205209.3|secretoglobin, family 2B, member 2
hg19_v2_chr3_-_48130707_48130789	0.0925761	GLI3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr22_+_45064593_45064656	0.0923571	GLI3	ENST00000432186.1|PRR5|ENSG00000186654.16|proline rich 5 (renal)
hg19_v2_chr11_+_66025091_66025155	0.0923354	GLI3	ENST00000526758.1|KLC2|ENSG00000174996.7|kinesin light chain 2 	ENST00000440228.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr15_+_89164520_89164559	0.0922784	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr4_-_105416039_105416065	0.092182	GLI3	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr1_-_161014731_161014788	0.0920236	GLI3	ENST00000368020.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr7_-_96339132_96339166	0.0920121	GLI3	ENST00000413065.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr1_+_13910194_13910339	0.0915335	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr16_+_28857957_28857969	0.0914514	GLI3	ENST00000567536.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr22_-_24622080_24622080	0.0910158	GLI3	ENST00000425408.1|GGT5|ENSG00000099998.13|gamma-glutamyltransferase 5
hg19_v2_chr8_+_144766669_144766683	0.0909745	GLI3	ENST00000526315.1|ZNF707|ENSG00000181135.11|zinc finger protein 707 	ENST00000532205.1|ZNF707|ENSG00000181135.11|zinc finger protein 707
hg19_v2_chr21_-_46340884_46341048	0.0909317	GLI3	ENST00000302347.5|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000517819.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr17_+_80818231_80818270	0.090897	GLI3	ENST00000576996.1|TBCD|ENSG00000141556.16|tubulin folding cofactor D
hg19_v2_chr11_+_2407287_2407325	0.0906871	GLI3	ENST00000381036.3|CD81|ENSG00000110651.7|CD81 molecule 	ENST00000492252.1|CD81|ENSG00000110651.7|CD81 molecule
hg19_v2_chrX_-_148713440_148713568	0.0903721	GLI3	ENST00000536359.1|TMEM185A|ENSG00000155984.10|transmembrane protein 185A 	ENST00000316916.8|TMEM185A|ENSG00000155984.10|transmembrane protein 185A
hg19_v2_chr6_-_42016385_42016706	0.0902902	GLI3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr6_+_160183492_160183523	0.09006	GLI3	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chrX_-_130037198_130037234	0.0899677	GLI3	ENST00000370935.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000338144.3|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2 	ENST00000394363.1|ENOX2|ENSG00000165675.12|ecto-NOX disulfide-thiol exchanger 2
hg19_v2_chr19_+_57791806_57791875	0.0898245	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chrX_+_106449862_106449880	0.0897668	GLI3	ENST00000372453.3|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3 	ENST00000535523.1|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3
hg19_v2_chr17_+_63096903_63096938	0.0896743	GLI3	ENST00000582940.1|RP11-160O5.1|ENSG00000263470.1|RP11-160O5.1
hg19_v2_chr8_-_29120580_29120596	0.0896407	GLI3	ENST00000524189.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr16_-_5116025_5116111	0.0893894	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr4_-_76861392_76861418	0.0891002	GLI3	ENST00000505594.1|NAAA|ENSG00000138744.10|N-acylethanolamine acid amidase
hg19_v2_chr14_+_101292445_101292485	0.0889933	GLI3	ENST00000429159.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000520714.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000522771.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000424076.3|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000423456.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000521404.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000556736.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000451743.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000398518.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000554639.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000452120.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000519709.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000412736.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr11_+_76493294_76493332	0.0889897	GLI3	ENST00000533752.1|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chrX_-_11308598_11308610	0.0887234	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr17_+_72270380_72270420	0.0886937	GLI3	ENST00000582036.1|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2 	ENST00000307504.5|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2
hg19_v2_chr9_+_138391805_138391830	0.0886176	GLI3	ENST00000371785.1|MRPS2|ENSG00000122140.6|mitochondrial ribosomal protein S2
hg19_v2_chr21_+_47268058_47268079	0.0883929	GLI3	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr14_-_94856987_94857000	0.0883145	GLI3	ENST00000449399.3|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000404814.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr8_-_122653630_122653661	0.0883122	GLI3	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr17_-_26989136_26989218	0.0880135	GLI3	ENST00000247020.4|SDF2|ENSG00000132581.5|stromal cell-derived factor 2
hg19_v2_chrX_+_51927919_51927991	0.0879551	GLI3	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr11_+_66025938_66026016	0.0876153	GLI3	ENST00000394066.2|KLC2|ENSG00000174996.7|kinesin light chain 2
hg19_v2_chr19_+_1103936_1104007	0.0875988	GLI3	ENST00000354171.8|GPX4|ENSG00000167468.12|glutathione peroxidase 4 	ENST00000589115.1|GPX4|ENSG00000167468.12|glutathione peroxidase 4
hg19_v2_chr6_-_31324943_31324965	0.0875228	GLI3	ENST00000412585.2|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B 	ENST00000434333.1|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B
hg19_v2_chr2_-_27434756_27434898	0.0873624	GLI3	ENST00000426119.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 	ENST00000412471.1|SLC5A6|ENSG00000138074.10|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
hg19_v2_chr21_-_18985230_18985265	0.087346	GLI3	ENST00000457956.1|BTG3|ENSG00000154640.10|BTG family, member 3 	ENST00000348354.6|BTG3|ENSG00000154640.10|BTG family, member 3
hg19_v2_chr8_+_144328991_144329280	0.0871	GLI3	ENST00000520584.1|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000330701.4|ZFP41|ENSG00000181638.13|ZFP41 zinc finger protein 	ENST00000522452.1|ZFP41|ENSG00000264668.1|ZFP41
hg19_v2_chr19_-_51456321_51456332	0.0866786	GLI3	ENST00000391809.2|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr11_+_64052944_64052986	0.0865392	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr6_-_85473073_85473114	0.0863383	GLI3	ENST00000606621.1|TBX18|ENSG00000112837.12|T-box 18
hg19_v2_chr17_-_1420182_1420279	0.0863142	GLI3	ENST00000421807.2|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr19_+_39989535_39989562	0.0862349	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr12_-_53715328_53715415	0.0860324	GLI3	ENST00000547757.1|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000394384.3|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia 	ENST00000209873.4|AAAS|ENSG00000094914.8|achalasia, adrenocortical insufficiency, alacrimia
hg19_v2_chr19_-_344786_344826	0.0859746	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr12_+_122326630_122326646	0.0859609	GLI3	ENST00000541212.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000340175.5|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr6_-_31671058_31671221	0.0858259	GLI3	ENST00000538874.1|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A 	ENST00000395952.3|ABHD16A|ENSG00000204427.7|abhydrolase domain containing 16A
hg19_v2_chr12_-_48744554_48744733	0.0857349	GLI3	ENST00000544117.2|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000548932.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000549125.1|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000301042.3|ZNF641|ENSG00000167528.8|zinc finger protein 641 	ENST00000547026.1|ZNF641|ENSG00000167528.8|zinc finger protein 641
hg19_v2_chr22_-_42322795_42322822	0.0857	GLI3	ENST00000291232.3|TNFRSF13C|ENSG00000159958.3|tumor necrosis factor receptor superfamily, member 13C
hg19_v2_chr3_-_48672859_48672926	0.0856796	GLI3	ENST00000395550.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000455886.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000431739.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000426599.1|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000383733.3|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000420764.2|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6 	ENST00000337000.8|SLC26A6|ENSG00000225697.6|solute carrier family 26 (anion exchanger), member 6
hg19_v2_chr19_+_17186577_17186637	0.0856377	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chr3_-_127872625_127872757	0.0855847	GLI3	ENST00000464873.1|RUVBL1|ENSG00000175792.7|RuvB-like AAA ATPase 1
hg19_v2_chr20_+_31755934_31755974	0.0854962	GLI3	ENST00000354932.5|BPIFA2|ENSG00000131050.6|BPI fold containing family A, member 2
hg19_v2_chr15_+_45544426_45544451	0.0851269	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chr20_+_48552908_48552949	0.0850496	GLI3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr6_-_16761678_16761721	0.0849171	GLI3	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr13_-_21918947_21918984	0.0842804	GLI3	ENST00000423575.1|LINC00539|ENSG00000224429.3|LINC00539
hg19_v2_chr19_-_51456344_51456364	0.0842385	GLI3	ENST00000336334.3|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5 	ENST00000593428.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr22_+_38035623_38035712	0.0842014	GLI3	ENST00000336738.5|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1 	ENST00000442465.2|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1
hg19_v2_chr10_+_45495898_45495923	0.0841961	GLI3	ENST00000298299.3|ZNF22|ENSG00000165512.4|zinc finger protein 22
hg19_v2_chr12_-_2944184_2944209	0.0841138	GLI3	ENST00000337508.4|NRIP2|ENSG00000053702.10|nuclear receptor interacting protein 2
hg19_v2_chr2_+_228736321_228736332	0.0837338	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr17_-_39968855_39968880	0.0832473	GLI3	ENST00000355468.3|LEPREL4|ENSG00000141696.8|leprecan-like 4 	ENST00000590496.1|LEPREL4|ENSG00000141696.8|leprecan-like 4
hg19_v2_chr1_-_182573514_182573543	0.0830958	GLI3	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr22_+_50528459_50528516	0.0829315	GLI3	ENST00000395858.3|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000395843.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr3_+_49591881_49591940	0.0828905	GLI3	ENST00000296452.4|BSN|ENSG00000164061.4|bassoon presynaptic cytomatrix protein
hg19_v2_chr19_+_48281946_48281974	0.0828393	GLI3	ENST00000595615.1|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr8_-_145028013_145028088	0.0827957	GLI3	ENST00000354958.2|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr14_-_94857004_94857030	0.0827466	GLI3	ENST00000557492.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000448921.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000437397.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000355814.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000393088.4|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr12_-_10766184_10766222	0.0825293	GLI3	ENST00000539554.1|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000381881.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila) 	ENST00000320756.2|MAGOHB|ENSG00000111196.5|mago-nashi homolog B (Drosophila)
hg19_v2_chr17_+_75450099_75450128	0.0821595	GLI3	ENST00000586433.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr16_-_2031464_2031550	0.0819912	GLI3	ENST00000356120.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1 	ENST00000354249.4|NOXO1|ENSG00000196408.7|NADPH oxidase organizer 1
hg19_v2_chr19_+_38810447_38810529	0.0819823	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr19_-_2739992_2740027	0.0819103	GLI3	ENST00000545664.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000589363.1|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3 	ENST00000455372.2|SLC39A3|ENSG00000141873.6|solute carrier family 39 (zinc transporter), member 3
hg19_v2_chr22_+_31523734_31523788	0.0818952	GLI3	ENST00000402238.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J 	ENST00000404453.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J 	ENST00000401755.1|INPP5J|ENSG00000185133.9|inositol polyphosphate-5-phosphatase J
hg19_v2_chr17_+_7253667_7253740	0.0818261	GLI3	ENST00000570504.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 	ENST00000574499.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
hg19_v2_chr7_-_156433195_156433348	0.0817209	GLI3	ENST00000333319.6|C7orf13|ENSG00000244291.1|chromosome 7 open reading frame 13
hg19_v2_chr19_+_1905365_1905417	0.0812409	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr10_+_52751010_52751118	0.0812162	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr10_-_126847276_126847294	0.0811411	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr14_+_19553365_19553365	0.0808844	GLI3	ENST00000409832.3|POTEG|ENSG00000222036.3|POTE ankyrin domain family, member G
hg19_v2_chr3_-_52273098_52273276	0.0805761	GLI3	ENST00000499914.2|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2 	ENST00000597542.1|TLR9|ENSG00000239732.2|toll-like receptor 9 	ENST00000305533.5|TWF2|ENSG00000247596.4|twinfilin actin-binding protein 2
hg19_v2_chr19_+_10217364_10217409	0.0805703	GLI3	ENST00000430370.1|PPAN|ENSG00000130810.15|peter pan homolog (Drosophila)
hg19_v2_chr12_+_48166978_48167047	0.0805669	GLI3	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr3_-_38178527_38178632	0.080464	GLI3	ENST00000544624.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000444607.2|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1 	ENST00000450296.1|ACAA1|ENSG00000060971.13|acetyl-CoA acyltransferase 1
hg19_v2_chr17_-_7760779_7760896	0.0804426	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr1_-_40105617_40105617	0.0804367	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr16_-_2908155_2908178	0.0803923	GLI3	ENST00000571228.1|PRSS22|ENSG00000005001.5|protease, serine, 22 	ENST00000161006.3|PRSS22|ENSG00000005001.5|protease, serine, 22
hg19_v2_chr10_+_50887683_50887735	0.0803334	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374111.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374112.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000535836.1|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53
hg19_v2_chr16_+_27325202_27325313	0.0801631	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr3_+_101818088_101818088	0.0800927	GLI3	ENST00000491959.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr22_+_41487711_41487798	0.0798011	GLI3	ENST00000263253.7|EP300|ENSG00000100393.9|E1A binding protein p300
hg19_v2_chr17_-_202579_202633	0.0797086	GLI3	ENST00000577079.1|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000331302.7|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains) 	ENST00000536489.2|RPH3AL|ENSG00000181031.11|rabphilin 3A-like (without C2 domains)
hg19_v2_chr11_-_506739_506821	0.0792837	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr3_-_49726104_49726106	0.0791226	GLI3	ENST00000383728.3|MST1|ENSG00000173531.11|macrophage stimulating 1 (hepatocyte growth factor-like) 	ENST00000545762.1|MST1|ENSG00000173531.11|macrophage stimulating 1 (hepatocyte growth factor-like)
hg19_v2_chr14_-_74462922_74463011	0.0790762	GLI3	ENST00000553284.1|ENTPD5|ENSG00000187097.8|ectonucleoside triphosphate diphosphohydrolase 5
hg19_v2_chr17_-_27224621_27224759	0.0790653	GLI3	ENST00000394906.2|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000585169.1|FLOT2|ENSG00000132589.11|flotillin 2 	ENST00000394908.4|FLOT2|ENSG00000132589.11|flotillin 2
hg19_v2_chr12_-_48151938_48151973	0.0790354	GLI3	ENST00000495953.2|RAPGEF3|ENSG00000079337.11|Rap guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr19_+_45147098_45147223	0.0789704	GLI3	ENST00000425690.3|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000344956.4|PVR|ENSG00000073008.10|poliovirus receptor 	ENST00000403059.4|PVR|ENSG00000073008.10|poliovirus receptor
hg19_v2_chr8_+_124194752_124194835	0.0785961	GLI3	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr22_+_44427230_44427253	0.0785552	GLI3	ENST00000444029.1|PARVB|ENSG00000188677.10|parvin, beta
hg19_v2_chr1_-_1051455_1051495	0.0785522	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr19_+_48281842_48281853	0.0784356	GLI3	ENST00000509570.2|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr9_+_5231413_5231425	0.0783203	GLI3	ENST00000239316.4|INSL4|ENSG00000120211.4|insulin-like 4 (placenta)
hg19_v2_chr9_+_134378289_134378409	0.0783001	GLI3	ENST00000423007.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000404875.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000441334.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000341012.7|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000372228.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000402686.3|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000419118.2|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000541219.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000354713.4|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000418774.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000415075.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000448212.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1 	ENST00000430619.1|POMT1|ENSG00000130714.11|protein-O-mannosyltransferase 1
hg19_v2_chr22_-_36761081_36761157	0.0780659	GLI3	ENST00000456729.1|MYH9|ENSG00000100345.16|myosin, heavy chain 9, non-muscle 	ENST00000401701.1|MYH9|ENSG00000100345.16|myosin, heavy chain 9, non-muscle
hg19_v2_chr19_+_37837185_37837199	0.0780324	GLI3	ENST00000541583.2|HKR1|ENSG00000181666.13|HKR1, GLI-Kruppel zinc finger family member
hg19_v2_chr15_-_43212996_43213013	0.0779616	GLI3	ENST00000567840.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chrX_-_40506766_40506824	0.0777627	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr12_-_45270077_45270143	0.0777228	GLI3	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr18_+_52385068_52385114	0.0775449	GLI3	ENST00000586570.1|RAB27B|ENSG00000041353.5|RAB27B, member RAS oncogene family
hg19_v2_chr1_-_22215192_22215216	0.0774562	GLI3	ENST00000374673.3|HSPG2|ENSG00000142798.12|heparan sulfate proteoglycan 2
hg19_v2_chr1_+_15764931_15764945	0.0773262	GLI3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr11_+_64949158_64949216	0.077076	GLI3	ENST00000527739.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000526966.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533129.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000524773.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr1_+_1551220_1551320	0.0770097	GLI3	ENST00000378712.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr15_-_101817616_101817710	0.0767589	GLI3	ENST00000526049.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000398226.3|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000537379.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr14_+_101295638_101295752	0.0767282	GLI3	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr16_-_21452040_21452040	0.0762855	GLI3	ENST00000521589.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr5_-_1799965_1800009	0.0762372	GLI3	ENST00000508987.1|MRPL36|ENSG00000171421.8|mitochondrial ribosomal protein L36
hg19_v2_chr22_+_50528308_50528439	0.0762142	GLI3	ENST00000545383.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000262794.5|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr10_+_134000404_134000432	0.076179	GLI3	ENST00000338492.4|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4 	ENST00000368629.1|DPYSL4|ENSG00000151640.8|dihydropyrimidinase-like 4
hg19_v2_chr17_+_40118759_40118772	0.0761281	GLI3	ENST00000393892.3|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr5_-_146833222_146833261	0.0756977	GLI3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr16_+_89168753_89168765	0.0756345	GLI3	ENST00000544543.1|ACSF3|ENSG00000176715.11|acyl-CoA synthetase family member 3
hg19_v2_chr8_-_145013711_145013786	0.0755459	GLI3	ENST00000345136.3|PLEC|ENSG00000178209.10|plectin
hg19_v2_chr1_+_150522222_150522315	0.0751686	GLI3	ENST00000369039.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr3_+_14166440_14166541	0.0750445	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr12_+_116985896_116985920	0.0750127	GLI3	ENST00000547114.1|RP11-809C9.2|ENSG00000258102.1|RP11-809C9.2
hg19_v2_chr1_-_28559502_28559570	0.0748646	GLI3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr17_+_40714092_40714205	0.0748363	GLI3	ENST00000420359.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000449624.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585811.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000585909.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000586771.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000421097.2|COASY|ENSG00000068120.10|CoA synthase 	ENST00000591779.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587858.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587214.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000587157.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000590958.1|COASY|ENSG00000068120.10|CoA synthase 	ENST00000393818.2|COASY|ENSG00000068120.10|CoA synthase
hg19_v2_chr20_+_31407692_31407709	0.0748141	GLI3	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chr5_-_162887071_162887166	0.0747139	GLI3	ENST00000302764.4|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr16_+_1730338_1730369	0.0745997	GLI3	ENST00000566691.1|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like 	ENST00000382710.4|HN1L|ENSG00000206053.8|hematological and neurological expressed 1-like
hg19_v2_chr2_-_24307635_24307660	0.0744924	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr15_-_78526855_78526916	0.0744807	GLI3	ENST00000541759.1|ACSBG1|ENSG00000103740.5|acyl-CoA synthetase bubblegum family member 1 	ENST00000558130.1|ACSBG1|ENSG00000103740.5|acyl-CoA synthetase bubblegum family member 1
hg19_v2_chr19_+_40476912_40476939	0.0743131	GLI3	ENST00000157812.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr1_-_34630820_34630875	0.0742621	GLI3	ENST00000373381.4|CSMD2|ENSG00000121904.13|CUB and Sushi multiple domains 2
hg19_v2_chr19_+_54619125_54619189	0.0742618	GLI3	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr1_+_154947126_154947147	0.0741915	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr14_-_51297360_51297426	0.0741684	GLI3	ENST00000496749.1|NIN|ENSG00000100503.19|ninein (GSK3B interacting protein)
hg19_v2_chr17_-_78120936_78120992	0.074028	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr6_-_36725157_36725188	0.0738705	GLI3	ENST00000393189.2|CPNE5|ENSG00000124772.7|copine V
hg19_v2_chr15_+_75080883_75080890	0.0736198	GLI3	ENST00000567571.1|CSK|ENSG00000103653.12|c-src tyrosine kinase
hg19_v2_chr1_-_110283138_110283138	0.0736082	GLI3	ENST00000256594.3|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr15_-_65067773_65067796	0.073517	GLI3	ENST00000300069.4|RBPMS2|ENSG00000166831.4|RNA binding protein with multiple splicing 2
hg19_v2_chr17_+_81037473_81037567	0.0734111	GLI3	ENST00000320095.7|METRNL|ENSG00000176845.8|meteorin, glial cell differentiation regulator-like
hg19_v2_chr19_-_10213335_10213472	0.0733999	GLI3	ENST00000592641.1|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6 	ENST00000253109.4|ANGPTL6|ENSG00000130812.6|angiopoietin-like 6
hg19_v2_chr22_-_50312052_50312121	0.0732478	GLI3	ENST00000330817.6|ALG12|ENSG00000182858.9|ALG12, alpha-1,6-mannosyltransferase
hg19_v2_chr9_+_6758024_6758100	0.073059	GLI3	ENST00000442236.2|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr7_-_96339167_96339203	0.0726862	GLI3	ENST00000444799.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000417009.1|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1 	ENST00000248566.2|SHFM1|ENSG00000127922.5|split hand/foot malformation (ectrodactyly) type 1
hg19_v2_chr12_-_6798616_6798684	0.0726438	GLI3	ENST00000355772.4|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000417772.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396801.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396799.2|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr12_+_53689309_53689366	0.0725567	GLI3	ENST00000351500.3|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000550846.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000334478.4|PFDN5|ENSG00000123349.9|prefoldin subunit 5 	ENST00000549759.1|PFDN5|ENSG00000123349.9|prefoldin subunit 5
hg19_v2_chr11_-_3078616_3078667	0.0724703	GLI3	ENST00000401769.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000278224.9|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000397114.3|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase 	ENST00000380525.4|CARS|ENSG00000110619.12|cysteinyl-tRNA synthetase
hg19_v2_chr10_+_134145735_134145783	0.0723908	GLI3	ENST00000368613.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr15_-_43212836_43212991	0.0723083	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000564431.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2 	ENST00000567274.1|TTBK2|ENSG00000128881.12|tau tubulin kinase 2
hg19_v2_chr3_-_49066811_49066851	0.0722354	GLI3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chr2_+_85839218_85839255	0.0720126	GLI3	ENST00000448971.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000442708.1|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39 	ENST00000450066.2|USP39|ENSG00000168883.15|ubiquitin specific peptidase 39
hg19_v2_chr19_+_45417921_45417970	0.0719501	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr7_+_44084262_44084332	0.0719203	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr10_-_43903217_43903267	0.0718653	GLI3	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr2_-_61108449_61108536	0.0718297	GLI3	ENST00000439412.1|AC010733.4|ENSG00000228414.2|AC010733.4	ENST00000452343.1|AC010733.4|ENSG00000228414.2|AC010733.4
hg19_v2_chr1_+_26605618_26605667	0.0717789	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr11_+_66247478_66247503	0.0716735	GLI3	ENST00000531863.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3 	ENST00000532677.1|DPP3|ENSG00000254986.3|dipeptidyl-peptidase 3
hg19_v2_chr7_-_99764853_99764886	0.0710559	GLI3	ENST00000411994.1|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4 	ENST00000426974.2|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4
hg19_v2_chr17_+_17942594_17942606	0.0709554	GLI3	ENST00000268719.4|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chr3_+_11313995_11314071	0.0709212	GLI3	ENST00000451513.1|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000435760.1|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000451830.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr14_-_74959994_74960020	0.0708827	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr21_+_45725050_45725211	0.0706372	GLI3	ENST00000403390.1|PFKL|ENSG00000141959.12|phosphofructokinase, liver
hg19_v2_chr16_+_2097403_2097466	0.0706086	GLI3	ENST00000219476.3|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr11_-_89541743_89541743	0.0703719	GLI3	ENST00000329758.1|TRIM49|ENSG00000168930.9|tripartite motif containing 49
hg19_v2_chr1_-_32264250_32264354	0.070364	GLI3	ENST00000528579.1|SPOCD1|ENSG00000134668.8|SPOC domain containing 1
hg19_v2_chr1_+_207039154_207039198	0.0703313	GLI3	ENST00000367096.3|IL20|ENSG00000162891.6|interleukin 20 	ENST00000391930.2|IL20|ENSG00000162891.6|interleukin 20
hg19_v2_chr4_+_24661479_24661534	0.0702981	GLI3	ENST00000569621.1|RP11-496D24.2|ENSG00000261121.1|RP11-496D24.2
hg19_v2_chr22_+_46481861_46481895	0.0702568	GLI3	ENST00000360737.3|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr3_-_128840604_128840993	0.0699321	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr11_+_22214708_22214730	0.0699215	GLI3	ENST00000324559.8|ANO5|ENSG00000171714.10|anoctamin 5
hg19_v2_chr17_-_73905899_73905899	0.0698883	GLI3	ENST00000409963.3|MRPL38|ENSG00000204316.8|mitochondrial ribosomal protein L38
hg19_v2_chr2_-_105946491_105946491	0.0698303	GLI3	ENST00000393359.2|TGFBRAP1|ENSG00000135966.8|transforming growth factor, beta receptor associated protein 1
hg19_v2_chr19_+_18699599_18699623	0.0698288	GLI3	ENST00000450195.2|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr12_-_6798523_6798548	0.0697314	GLI3	ENST00000319770.3|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr1_-_46664074_46664126	0.0695698	GLI3	ENST00000371986.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 	ENST00000371984.3|POMGNT1|ENSG00000085998.9|protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
hg19_v2_chr11_+_64053005_64053171	0.0694323	GLI3	ENST00000538032.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr11_+_46366799_46366832	0.0694069	GLI3	ENST00000532868.2|DGKZ|ENSG00000149091.11|diacylglycerol kinase, zeta
hg19_v2_chrX_+_149531606_149531686	0.0692624	GLI3	ENST00000432680.2|MAMLD1|ENSG00000013619.9|mastermind-like domain containing 1
hg19_v2_chr6_+_170151887_170151902	0.0689296	GLI3	ENST00000588451.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr3_+_195384929_195384964	0.0687185	GLI3	ENST00000457233.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539252.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000452844.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000429897.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539717.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000453324.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000445430.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000414625.2|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000425425.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969
hg19_v2_chr1_-_1009683_1009688	0.0684319	GLI3	ENST00000453464.2|RNF223|ENSG00000237330.2|ring finger protein 223
hg19_v2_chr2_+_96991935_96991957	0.0683801	GLI3	ENST00000361124.4|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000420728.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1 	ENST00000542887.1|ITPRIPL1|ENSG00000198885.5|inositol 1,4,5-trisphosphate receptor interacting protein-like 1
hg19_v2_chr11_-_59436453_59436530	0.0681581	GLI3	ENST00000300146.9|PATL1|ENSG00000166889.13|protein associated with topoisomerase II homolog 1 (yeast)
hg19_v2_chr19_+_35521616_35521647	0.0679992	GLI3	ENST00000595652.1|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr19_+_29097595_29097640	0.0679656	GLI3	ENST00000587961.1|AC079466.1|ENSG00000266976.1|AC079466.1
hg19_v2_chr1_-_157108130_157108173	0.0679234	GLI3	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr11_+_46332679_46332708	0.0678474	GLI3	ENST00000530518.1|CREB3L1|ENSG00000157613.6|cAMP responsive element binding protein 3-like 1
hg19_v2_chr12_+_12510045_12510073	0.0677555	GLI3	ENST00000314565.4|LOH12CR1|ENSG00000165714.6|loss of heterozygosity, 12, chromosomal region 1
hg19_v2_chr2_-_74726710_74726843	0.0677031	GLI3	ENST00000377566.4|LBX2|ENSG00000179528.11|ladybird homeobox 2
hg19_v2_chr19_+_489140_489179	0.0676566	GLI3	ENST00000587541.1|MADCAM1|ENSG00000099866.10|mucosal vascular addressin cell adhesion molecule 1
hg19_v2_chrX_+_134166333_134166371	0.0676485	GLI3	ENST00000257013.7|FAM127A|ENSG00000134590.9|family with sequence similarity 127, member A
hg19_v2_chr22_-_41258074_41258130	0.0675278	GLI3	ENST00000307221.4|DNAJB7|ENSG00000172404.4|DnaJ (Hsp40) homolog, subfamily B, member 7
hg19_v2_chr13_+_76210448_76210494	0.067185	GLI3	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr17_-_7761256_7761397	0.0666899	GLI3	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_-_18366182_18366229	0.0662779	GLI3	ENST00000355502.3|PDE4C|ENSG00000105650.17|phosphodiesterase 4C, cAMP-specific
hg19_v2_chr22_+_40742512_40742543	0.0662321	GLI3	ENST00000454266.2|ADSL|ENSG00000239900.7|adenylosuccinate lyase 	ENST00000342312.6|ADSL|ENSG00000239900.7|adenylosuccinate lyase
hg19_v2_chr17_-_79995553_79995608	0.0662239	GLI3	ENST00000581584.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000577712.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000582900.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000579155.1|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase 	ENST00000306869.2|DCXR|ENSG00000169738.3|dicarbonyl/L-xylulose reductase
hg19_v2_chr1_+_150122034_150122170	0.0661642	GLI3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr19_-_40791302_40791443	0.0661623	GLI3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr7_-_73668692_73668774	0.0661532	GLI3	ENST00000352131.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa 	ENST00000055077.3|RFC2|ENSG00000049541.6|replication factor C (activator 1) 2, 40kDa
hg19_v2_chr16_-_755819_755860	0.0659019	GLI3	ENST00000397621.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr9_-_131872928_131873088	0.0657888	GLI3	ENST00000455830.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000393384.3|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase 	ENST00000318080.2|CRAT|ENSG00000095321.12|carnitine O-acetyltransferase
hg19_v2_chr14_+_24605389_24605446	0.065654	GLI3	ENST00000382708.3|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) 	ENST00000561435.1|PSME1|ENSG00000092010.10|proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
hg19_v2_chrX_+_49160148_49160148	0.0656446	GLI3	ENST00000407599.3|GAGE10|ENSG00000215274.5|G antigen 10
hg19_v2_chr1_-_104238574_104238574	0.0656176	GLI3	ENST00000425410.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr14_-_94856951_94856979	0.0655826	GLI3	ENST00000553327.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000556955.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000557118.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000440909.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr8_+_23104130_23104184	0.065549	GLI3	ENST00000313219.7|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7 	ENST00000519984.1|CHMP7|ENSG00000147457.9|charged multivesicular body protein 7
hg19_v2_chr6_-_41747595_41747652	0.0654657	GLI3	ENST00000373018.3|FRS3|ENSG00000137218.6|fibroblast growth factor receptor substrate 3
hg19_v2_chr5_+_6583380_6583421	0.065427	GLI3	ENST00000507582.1|LINC01018|ENSG00000250056.1|long intergenic non-protein coding RNA 1018
hg19_v2_chr7_+_47694842_47694842	0.0654065	GLI3	ENST00000408988.2|C7orf65|ENSG00000221845.2|chromosome 7 open reading frame 65
hg19_v2_chr17_+_7788104_7788138	0.0652703	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr12_+_1800179_1800250	0.0651888	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr17_+_76374714_76374759	0.0651506	GLI3	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr11_+_14665263_14665274	0.0650947	GLI3	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr9_-_116159635_116159682	0.0649952	GLI3	ENST00000452726.1|ALAD|ENSG00000148218.11|aminolevulinate dehydratase
hg19_v2_chr16_-_27279900_27280115	0.0648097	GLI3	ENST00000564342.1|NSMCE1|ENSG00000169189.12|non-SMC element 1 homolog (S. cerevisiae) 	ENST00000567710.1|NSMCE1|ENSG00000169189.12|non-SMC element 1 homolog (S. cerevisiae) 	ENST00000563273.1|NSMCE1|ENSG00000169189.12|non-SMC element 1 homolog (S. cerevisiae) 	ENST00000361439.4|NSMCE1|ENSG00000169189.12|non-SMC element 1 homolog (S. cerevisiae)
hg19_v2_chr17_-_54991395_54991453	0.064586	GLI3	ENST00000316881.4|TRIM25|ENSG00000121060.10|tripartite motif containing 25
hg19_v2_chr22_-_50964849_50964903	0.0643725	GLI3	ENST00000543927.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein 	ENST00000423348.1|SCO2|ENSG00000130489.8|SCO2 cytochrome c oxidase assembly protein
hg19_v2_chr1_+_154947148_154947175	0.0640683	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr16_+_57844549_57844549	0.0639336	GLI3	ENST00000564282.1|CTD-2600O9.1|ENSG00000187185.3|uncharacterized protein LOC388282
hg19_v2_chr7_-_108166505_108166762	0.0636687	GLI3	ENST00000426128.2|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000427008.1|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000388728.5|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000257694.8|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000422087.1|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000453144.1|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8 	ENST00000436062.1|PNPLA8|ENSG00000135241.12|patatin-like phospholipase domain containing 8
hg19_v2_chr16_+_55690161_55690189	0.0635325	GLI3	ENST00000568655.1|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr16_+_28996114_28996166	0.0635	GLI3	ENST00000395461.3|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr1_+_161195781_161195795	0.0634523	GLI3	ENST00000367988.3|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr10_-_77161004_77161176	0.0634459	GLI3	ENST00000418818.2|RP11-399K21.11|ENSG00000270087.1|RP11-399K21.11
hg19_v2_chr15_+_59499031_59499054	0.0633487	GLI3	ENST00000307144.4|LDHAL6B|ENSG00000171989.4|lactate dehydrogenase A-like 6B
hg19_v2_chr5_+_148960931_148961073	0.0633065	GLI3	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr20_+_44098346_44098373	0.0632058	GLI3	ENST00000372676.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr15_-_65809625_65809676	0.0631324	GLI3	ENST00000560436.1|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr11_+_5712234_5712264	0.0631055	GLI3	ENST00000414641.1|TRIM22|ENSG00000132274.11|tripartite motif containing 22
hg19_v2_chr2_-_43266680_43266701	0.0629816	GLI3	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr7_+_143078652_143078754	0.0627882	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr9_+_131873227_131873243	0.0625341	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr8_+_21899898_21899937	0.062253	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr16_-_75285380_75285580	0.0620827	GLI3	ENST00000393420.6|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000162330.5|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chrX_+_46940254_46940264	0.0618573	GLI3	ENST00000336169.3|RGN|ENSG00000130988.8|regucalcin
hg19_v2_chr4_-_5894777_5894799	0.0615925	GLI3	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr1_-_1310870_1310920	0.0612028	GLI3	ENST00000338338.5|AURKAIP1|ENSG00000175756.9|aurora kinase A interacting protein 1
hg19_v2_chr1_+_214163033_214163073	0.0611744	GLI3	ENST00000607425.1|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr15_+_85525205_85525308	0.061046	GLI3	ENST00000394553.1|PDE8A|ENSG00000073417.10|phosphodiesterase 8A 	ENST00000339708.5|PDE8A|ENSG00000073417.10|phosphodiesterase 8A
hg19_v2_chr11_+_3819049_3819202	0.0609615	GLI3	ENST00000396986.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000300730.6|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532535.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396993.4|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000396991.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000532523.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000459679.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464261.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464906.2|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2 	ENST00000464441.1|PGAP2|ENSG00000148985.15|post-GPI attachment to proteins 2
hg19_v2_chr22_-_30783356_30783415	0.0609602	GLI3	ENST00000382363.3|RNF215|ENSG00000099999.10|ring finger protein 215
hg19_v2_chr2_+_159825143_159825190	0.0608905	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr19_-_44100275_44100302	0.0608329	GLI3	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr20_+_57466357_57466419	0.0607943	GLI3	ENST00000371095.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000371085.3|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000354359.7|GNAS|ENSG00000087460.19|GNAS complex locus 	ENST00000265620.7|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr19_-_22193706_22193721	0.0607026	GLI3	ENST00000597040.1|ZNF208|ENSG00000160321.10|zinc finger protein 208
hg19_v2_chr16_+_2564254_2564305	0.0605961	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr12_-_120687948_120687971	0.0605118	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr20_-_30310656_30310685	0.0604819	GLI3	ENST00000376055.4|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr17_+_39969183_39969265	0.0603986	GLI3	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr22_-_23922410_23922446	0.0598369	GLI3	ENST00000249053.3|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr3_-_48470838_48470872	0.0598368	GLI3	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr4_-_6692246_6692274	0.0598125	GLI3	ENST00000499502.2|RP11-539L10.2|ENSG00000246526.2|RP11-539L10.2
hg19_v2_chr19_-_59066327_59066389	0.0597925	GLI3	ENST00000596708.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000601220.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A 	ENST00000597848.1|CHMP2A|ENSG00000130724.4|charged multivesicular body protein 2A
hg19_v2_chr1_+_155293702_155293729	0.0595637	GLI3	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr10_-_1034237_1034289	0.0594198	GLI3	ENST00000381466.1|AL359878.1|ENSG00000205740.1|Uncharacterized protein
hg19_v2_chr1_+_104198640_104198640	0.0593117	GLI3	ENST00000422549.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr17_-_27139411_27139498	0.0590818	GLI3	ENST00000452648.3|FAM222B|ENSG00000173065.9|family with sequence similarity 222, member B
hg19_v2_chr19_+_41856816_41856871	0.0590519	GLI3	ENST00000539627.1|TMEM91|ENSG00000142046.10|transmembrane protein 91
hg19_v2_chr6_+_170151708_170151762	0.0590316	GLI3	ENST00000592367.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000590711.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366772.2|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000592745.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000392095.4|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000366773.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000586341.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000418781.3|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation 	ENST00000588437.1|ERMARD|ENSG00000130023.11|ER membrane-associated RNA degradation
hg19_v2_chr2_-_85637459_85637495	0.0586574	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr3_+_159481464_159481502	0.0583858	GLI3	ENST00000467377.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr3_-_47517302_47517451	0.0583373	GLI3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr19_+_44100632_44100683	0.0582776	GLI3	ENST00000533118.1|ZNF576|ENSG00000124444.11|zinc finger protein 576
hg19_v2_chr17_+_8339189_8339285	0.05825	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr11_+_134094508_134094617	0.0581648	GLI3	ENST00000281187.5|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe) 	ENST00000525095.2|VPS26B|ENSG00000151502.6|vacuolar protein sorting 26 homolog B (S. pombe)
hg19_v2_chr2_+_27851106_27851120	0.0581418	GLI3	ENST00000515877.1|GPN1|ENSG00000198522.9|GPN-loop GTPase 1
hg19_v2_chr12_+_51785057_51785105	0.0581273	GLI3	ENST00000535225.2|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr19_-_51456198_51456301	0.0581133	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.8|kallikrein-related peptidase 5
hg19_v2_chr20_-_30310693_30310719	0.0581106	GLI3	ENST00000307677.4|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000420653.1|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr6_-_46703092_46703156	0.0580194	GLI3	ENST00000541026.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr15_+_75105170_75105194	0.0579199	GLI3	ENST00000379709.3|LMAN1L|ENSG00000140506.12|lectin, mannose-binding, 1 like
hg19_v2_chr17_+_26989109_26989248	0.0576763	GLI3	ENST00000314616.6|SUPT6H|ENSG00000109111.10|suppressor of Ty 6 homolog (S. cerevisiae) 	ENST00000347486.4|SUPT6H|ENSG00000109111.10|suppressor of Ty 6 homolog (S. cerevisiae)
hg19_v2_chr19_+_40477062_40477112	0.057191	GLI3	ENST00000455878.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr11_+_832944_832994	0.0571408	GLI3	ENST00000322008.4|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000397421.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000529810.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000526693.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525333.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000524748.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000527341.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr19_+_35521699_35521725	0.056998	GLI3	ENST00000415950.3|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr22_+_39760130_39760175	0.0569416	GLI3	ENST00000381535.4|SYNGR1|ENSG00000100321.10|synaptogyrin 1
hg19_v2_chr9_+_129097479_129097498	0.0568488	GLI3	ENST00000402437.2|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr5_+_72509751_72509809	0.0567921	GLI3	ENST00000515556.1|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1	ENST00000513379.1|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1	ENST00000427584.2|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1
hg19_v2_chr12_+_31226779_31226834	0.0567895	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chrX_-_11369656_11369801	0.0567318	GLI3	ENST00000413512.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr17_+_4736627_4736720	0.0567239	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr1_+_24117627_24117659	0.0565063	GLI3	ENST00000400061.1|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr1_-_47082495_47082563	0.0564455	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chr19_-_2051223_2051252	0.0563786	GLI3	ENST00000309340.7|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589534.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000250896.3|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000589509.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr13_-_46756351_46756459	0.056225	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr1_+_161195835_161195864	0.0561695	GLI3	ENST00000545897.1|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr19_-_19754404_19754478	0.0558648	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr6_-_33281979_33281992	0.055861	GLI3	ENST00000426633.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000467025.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr6_+_163148973_163149044	0.0557571	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr15_-_41047421_41047534	0.0557461	GLI3	ENST00000560460.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000338376.3|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000560905.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3
hg19_v2_chrX_+_55026763_55026831	0.0556427	GLI3	ENST00000374987.3|APEX2|ENSG00000169188.4|APEX nuclease (apurinic/apyrimidinic endonuclease) 2
hg19_v2_chr17_-_17494972_17495037	0.0556305	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr11_-_119252359_119252421	0.0555341	GLI3	ENST00000455332.2|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chr2_+_26785409_26785477	0.055528	GLI3	ENST00000329615.3|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70 	ENST00000409392.1|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70
hg19_v2_chr2_-_180726232_180726275	0.0554596	GLI3	ENST00000410066.1|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr8_-_37411648_37411701	0.0554083	GLI3	ENST00000519738.1|RP11-150O12.1|ENSG00000253161.1|RP11-150O12.1
hg19_v2_chr9_+_131218336_131218366	0.0552868	GLI3	ENST00000372814.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr16_+_29984962_29984962	0.0551985	GLI3	ENST00000308893.4|TAOK2|ENSG00000149930.13|TAO kinase 2
hg19_v2_chr1_+_156123359_156123398	0.0549955	GLI3	ENST00000368284.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000368286.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000438830.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr17_-_42019836_42019844	0.0549945	GLI3	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr12_+_111843749_111843763	0.0549089	GLI3	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr17_-_46692287_46692317	0.0548656	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr14_-_101053739_101053767	0.0547025	GLI3	ENST00000554140.1|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr5_-_141060389_141060439	0.0545837	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.11|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg19_v2_chr3_-_10334617_10334637	0.0545491	GLI3	ENST00000429122.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000425479.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000335542.8|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr8_+_31497271_31497285	0.0543455	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr13_-_88463487_88463524	0.0542105	GLI3	ENST00000606221.1|RP11-471M2.3|ENSG00000272046.1|RP11-471M2.3
hg19_v2_chrX_+_48542168_48542241	0.05418	GLI3	ENST00000376701.4|WAS|ENSG00000015285.6|Wiskott-Aldrich syndrome
hg19_v2_chr9_-_35112376_35112395	0.0540972	GLI3	ENST00000488109.2|FAM214B|ENSG00000005238.15|family with sequence similarity 214, member B
hg19_v2_chr19_-_17185848_17186010	0.0540346	GLI3	ENST00000593360.1|HAUS8|ENSG00000131351.10|HAUS augmin-like complex, subunit 8
hg19_v2_chr10_-_18948208_18948219	0.0540153	GLI3	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr11_-_88070896_88070917	0.0538036	GLI3	ENST00000529974.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000527018.1|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr6_-_33282024_33282046	0.0537767	GLI3	ENST00000475304.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000489157.1|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr1_-_110306526_110306553	0.0537591	GLI3	ENST00000361965.4|EPS8L3|ENSG00000198758.6|EPS8-like 3 	ENST00000361852.4|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr9_-_130639997_130640022	0.0535691	GLI3	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr2_+_137523086_137523120	0.0534702	GLI3	ENST00000409968.1|THSD7B|ENSG00000144229.7|thrombospondin, type I, domain containing 7B
hg19_v2_chr8_+_1922024_1922069	0.0532614	GLI3	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr5_+_218356_218453	0.0532486	GLI3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr11_-_118789613_118789738	0.0531664	GLI3	ENST00000532899.1|BCL9L|ENSG00000186174.8|B-cell CLL/lymphoma 9-like
hg19_v2_chr19_-_48894104_48894170	0.0529944	GLI3	ENST00000597017.1|KDELR1|ENSG00000105438.4|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
hg19_v2_chr11_+_68228186_68228281	0.0529891	GLI3	ENST00000393799.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393800.2|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000528635.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000533127.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529907.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529344.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000534534.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524845.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265637.4|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000524904.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000393801.3|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000265636.5|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3 	ENST00000529710.1|PPP6R3|ENSG00000110075.10|protein phosphatase 6, regulatory subunit 3
hg19_v2_chr12_+_123464607_123464873	0.052881	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr17_+_80842656_80842684	0.0528485	GLI3	ENST00000576760.1|TBCD|ENSG00000141556.16|tubulin folding cofactor D
hg19_v2_chr1_+_180165672_180165817	0.0527592	GLI3	ENST00000443059.1|QSOX1|ENSG00000116260.12|quiescin Q6 sulfhydryl oxidase 1
hg19_v2_chr19_-_40324255_40324296	0.0526535	GLI3	ENST00000593685.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000600611.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr14_+_105155925_105155979	0.0526214	GLI3	ENST00000330634.7|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000398337.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing 	ENST00000392634.4|INF2|ENSG00000203485.8|inverted formin, FH2 and WH2 domain containing
hg19_v2_chr8_+_133931648_133931685	0.0524226	GLI3	ENST00000519178.1|TG|ENSG00000042832.7|thyroglobulin 	ENST00000542445.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr3_+_127323739_127323739	0.052362	GLI3	ENST00000491422.1|MCM2|ENSG00000073111.9|minichromosome maintenance complex component 2
hg19_v2_chr19_+_7599792_7599911	0.0521191	GLI3	ENST00000600942.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6 	ENST00000593924.1|PNPLA6|ENSG00000032444.11|patatin-like phospholipase domain containing 6
hg19_v2_chr18_-_31803435_31803515	0.0521041	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr19_+_44085189_44085189	0.0519776	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr17_-_62502399_62502411	0.0519661	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr19_+_58790314_58790358	0.0519371	GLI3	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr1_+_15479021_15479053	0.051888	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr8_-_144416965_144417066	0.051776	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr1_+_22138758_22138856	0.0515025	GLI3	ENST00000344642.2|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2 	ENST00000543870.1|LDLRAD2|ENSG00000187942.7|low density lipoprotein receptor class A domain containing 2
hg19_v2_chr8_+_94929077_94929106	0.0513884	GLI3	ENST00000297598.4|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000520614.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr20_+_31499459_31499459	0.0513259	GLI3	ENST00000439060.1|EFCAB8|ENSG00000215529.8|EF-hand calcium binding domain 8
hg19_v2_chr14_-_50778872_50778928	0.0511706	GLI3	ENST00000555610.1|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase 	ENST00000261699.4|L2HGDH|ENSG00000087299.7|L-2-hydroxyglutarate dehydrogenase
hg19_v2_chr1_+_21766588_21766637	0.0511384	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr1_+_48688357_48688412	0.0507869	GLI3	ENST00000533824.1|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000438567.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000236495.5|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000420136.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9
hg19_v2_chr12_+_10365404_10365547	0.0507789	GLI3	ENST00000266458.5|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000421801.2|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000544284.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545047.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000543602.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1 	ENST00000545887.1|GABARAPL1|ENSG00000139112.6|GABA(A) receptor-associated protein like 1
hg19_v2_chr14_+_24099318_24099333	0.0507587	GLI3	ENST00000432832.2|DHRS2|ENSG00000100867.10|dehydrogenase/reductase (SDR family) member 2
hg19_v2_chr16_+_67381289_67381306	0.0506257	GLI3	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr7_-_151511911_151511962	0.0506125	GLI3	ENST00000392801.2|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr20_+_42143136_42143166	0.05055	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr9_+_112542572_112542590	0.0505291	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr22_-_31885514_31885573	0.0505152	GLI3	ENST00000397525.1|EIF4ENIF1|ENSG00000184708.13|eukaryotic translation initiation factor 4E nuclear import factor 1
hg19_v2_chr11_-_34938039_34938050	0.050493	GLI3	ENST00000395787.3|APIP|ENSG00000149089.8|APAF1 interacting protein
hg19_v2_chr17_+_43238438_43238461	0.0503308	GLI3	ENST00000593138.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2 	ENST00000586681.1|HEXIM2|ENSG00000168517.6|hexamethylene bis-acetamide inducible 2
hg19_v2_chrX_-_47518498_47518521	0.050305	GLI3	ENST00000335890.2|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr11_+_120973375_120973375	0.0502976	GLI3	ENST00000264037.2|TECTA|ENSG00000109927.5|tectorin alpha
hg19_v2_chr5_+_98109322_98109350	0.0502976	GLI3	ENST00000513185.1|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr1_+_202091980_202091991	0.049836	GLI3	ENST00000367282.5|GPR37L1|ENSG00000170075.8|G protein-coupled receptor 37 like 1
hg19_v2_chr20_+_55204351_55204377	0.0498157	GLI3	ENST00000201031.2|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr9_+_134000948_134001043	0.0497948	GLI3	ENST00000359428.5|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000411637.2|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000451030.1|NUP214|ENSG00000126883.12|nucleoporin 214kDa
hg19_v2_chr11_+_89867681_89867697	0.0493522	GLI3	ENST00000534061.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr19_-_13213954_13214021	0.0493042	GLI3	ENST00000590974.1|LYL1|ENSG00000104903.4|lymphoblastic leukemia derived sequence 1
hg19_v2_chr16_+_30675654_30675778	0.049292	GLI3	ENST00000287468.5|FBRS|ENSG00000156860.11|fibrosin 	ENST00000395073.2|FBRS|ENSG00000156860.11|fibrosin
hg19_v2_chr17_-_7761172_7761209	0.0491981	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr21_-_33984865_33984883	0.0491109	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr17_+_61554413_61554434	0.0489847	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr3_+_51977294_51977327	0.0489422	GLI3	ENST00000498510.1|PARP3|ENSG00000041880.10|poly (ADP-ribose) polymerase family, member 3
hg19_v2_chr16_+_67381263_67381284	0.0489073	GLI3	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr19_-_35323762_35323779	0.0488822	GLI3	ENST00000590963.1|CTC-523E23.4|ENSG00000267767.2|CTC-523E23.4
hg19_v2_chr5_+_150226085_150226085	0.0488694	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr22_+_31892373_31892556	0.0488689	GLI3	ENST00000443011.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400289.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000444859.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400288.2|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr2_+_201936707_201936753	0.0488555	GLI3	ENST00000433898.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 	ENST00000454214.1|NDUFB3|ENSG00000119013.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa
hg19_v2_chr9_+_131873591_131873622	0.0487397	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr22_-_30234218_30234276	0.0486727	GLI3	ENST00000307790.3|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000542393.1|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2 	ENST00000397771.2|ASCC2|ENSG00000100325.10|activating signal cointegrator 1 complex subunit 2
hg19_v2_chr15_-_50838888_50838896	0.048535	GLI3	ENST00000532404.1|USP50|ENSG00000170236.10|ubiquitin specific peptidase 50
hg19_v2_chr16_+_2014993_2015049	0.0484259	GLI3	ENST00000564014.1|SNHG9|ENSG00000255198.3|small nucleolar RNA host gene 9 (non-protein coding)
hg19_v2_chr1_+_27114418_27114518	0.0483408	GLI3	ENST00000078527.4|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr17_-_6735012_6735030	0.0482989	GLI3	ENST00000535086.1|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr20_+_34129770_34129879	0.0482484	GLI3	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr11_-_111649015_111649030	0.0482162	GLI3	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr16_+_29817399_29817427	0.0480659	GLI3	ENST00000545521.1|MAZ|ENSG00000103495.9|MYC-associated zinc finger protein (purine-binding transcription factor)
hg19_v2_chr17_-_73149921_73149971	0.0479714	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr4_+_40194570_40194608	0.0479016	GLI3	ENST00000507851.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr9_+_95997205_95997205	0.0478454	GLI3	ENST00000411624.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chr11_+_2482661_2482675	0.0477413	GLI3	ENST00000335475.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr21_-_31311818_31312013	0.0477062	GLI3	ENST00000535441.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000309434.7|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000327783.4|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389124.2|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000389125.3|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1 	ENST00000399913.1|GRIK1|ENSG00000171189.12|glutamate receptor, ionotropic, kainate 1
hg19_v2_chr19_-_17571613_17571693	0.0476532	GLI3	ENST00000594663.1|CTD-2521M24.10|ENSG00000269035.1|Uncharacterized protein
hg19_v2_chr2_+_70314579_70314590	0.0475386	GLI3	ENST00000303577.5|PCBP1|ENSG00000169564.5|poly(rC) binding protein 1
hg19_v2_chr17_+_40172097_40172175	0.0475168	GLI3	ENST00000393880.1|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000393881.3|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000462043.2|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000449471.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2 	ENST00000316082.4|NKIRAS2|ENSG00000168256.13|NFKB inhibitor interacting Ras-like 2
hg19_v2_chr6_+_35436167_35436194	0.0474801	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr2_+_173940163_173940183	0.0474184	GLI3	ENST00000539448.1|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr11_-_30607819_30607867	0.047262	GLI3	ENST00000448418.2|MPPED2|ENSG00000066382.12|metallophosphoesterase domain containing 2
hg19_v2_chr15_-_78933567_78933604	0.047097	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr9_-_127952032_127952098	0.0470315	GLI3	ENST00000456642.1|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373546.3|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit 	ENST00000373547.4|PPP6C|ENSG00000119414.7|protein phosphatase 6, catalytic subunit
hg19_v2_chr3_+_44626359_44626387	0.0470179	GLI3	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr11_+_844067_844158	0.0470003	GLI3	ENST00000397406.1|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000409543.2|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000525201.1|TSPAN4|ENSG00000214063.6|tetraspanin 4
hg19_v2_chr19_-_2256405_2256428	0.046991	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr3_+_184081137_184081155	0.0469001	GLI3	ENST00000443489.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr4_-_20985632_20985664	0.0468948	GLI3	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr11_-_65374430_65374497	0.046871	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr4_+_189376725_189376779	0.0467812	GLI3	ENST00000510832.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060 	ENST00000510005.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060 	ENST00000503458.1|LINC01060|ENSG00000249378.1|long intergenic non-protein coding RNA 1060
hg19_v2_chr12_-_125348329_125348419	0.0467543	GLI3	ENST00000546215.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000415380.2|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000261693.6|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000376788.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1 	ENST00000545493.1|SCARB1|ENSG00000073060.11|scavenger receptor class B, member 1
hg19_v2_chr20_-_22566089_22566097	0.0465628	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr22_+_18593097_18593115	0.0465539	GLI3	ENST00000426208.1|TUBA8|ENSG00000183785.10|tubulin, alpha 8
hg19_v2_chr5_+_161494770_161494787	0.0465418	GLI3	ENST00000414552.2|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2 	ENST00000361925.4|GABRG2|ENSG00000113327.10|gamma-aminobutyric acid (GABA) A receptor, gamma 2
hg19_v2_chr11_-_8615720_8615836	0.0464975	GLI3	ENST00000358872.3|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000454443.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr20_-_50722183_50722217	0.0463881	GLI3	ENST00000371523.4|ZFP64|ENSG00000020256.15|ZFP64 zinc finger protein
hg19_v2_chr2_-_84686552_84686624	0.0463281	GLI3	ENST00000393868.2|SUCLG1|ENSG00000163541.7|succinate-CoA ligase, alpha subunit
hg19_v2_chr15_+_49447947_49448036	0.046312	GLI3	ENST00000327171.3|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560654.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr16_+_2106134_2106163	0.0462313	GLI3	ENST00000467949.1|TSC2|ENSG00000103197.12|tuberous sclerosis 2
hg19_v2_chr17_+_74723031_74723047	0.0461081	GLI3	ENST00000586200.1|METTL23|ENSG00000181038.9|methyltransferase like 23
hg19_v2_chr14_-_39572345_39572453	0.0460183	GLI3	ENST00000548032.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000556092.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000557280.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000545328.2|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae) 	ENST00000553970.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr1_+_162531294_162531332	0.0460149	GLI3	ENST00000367926.4|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1 	ENST00000271469.3|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1
hg19_v2_chr19_+_20278043_20278083	0.0459577	GLI3	ENST00000335117.8|ZNF486|ENSG00000256229.3|zinc finger protein 486
hg19_v2_chr21_+_47540424_47540474	0.0457222	GLI3	ENST00000413758.1|COL6A2|ENSG00000142173.10|collagen, type VI, alpha 2
hg19_v2_chr8_-_145331153_145331153	0.0457114	GLI3	ENST00000377412.4|KM-PA-2|ENSG00000204775.4|KM-PA-2 protein; Uncharacterized protein
hg19_v2_chr7_-_121784285_121784350	0.0455195	GLI3	ENST00000417368.2|AASS|ENSG00000008311.10|aminoadipate-semialdehyde synthase
hg19_v2_chr8_+_110374683_110374759	0.0453093	GLI3	ENST00000378402.5|PKHD1L1|ENSG00000205038.7|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
hg19_v2_chr17_-_79633590_79633678	0.045285	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr1_+_26872324_26872362	0.0452755	GLI3	ENST00000531382.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr11_-_117103208_117103288	0.0452324	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr11_+_64949343_64949454	0.0452089	GLI3	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr5_-_132112907_132112918	0.0451797	GLI3	ENST00000458488.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr4_-_187476721_187476721	0.0451164	GLI3	ENST00000307161.5|MTNR1A|ENSG00000168412.6|melatonin receptor 1A
hg19_v2_chr8_-_142011291_142011307	0.045034	GLI3	ENST00000521059.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr8_-_57906362_57906452	0.0450338	GLI3	ENST00000262644.4|IMPAD1|ENSG00000104331.4|inositol monophosphatase domain containing 1
hg19_v2_chr12_+_6977258_6977319	0.0450278	GLI3	ENST00000488464.2|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000535434.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1 	ENST00000493987.1|TPI1|ENSG00000111669.10|triosephosphate isomerase 1
hg19_v2_chr1_+_27114589_27114712	0.0449564	GLI3	ENST00000431541.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000449950.2|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V 	ENST00000374145.1|PIGV|ENSG00000060642.6|phosphatidylinositol glycan anchor biosynthesis, class V
hg19_v2_chr2_-_96781984_96781984	0.0447901	GLI3	ENST00000409345.3|ADRA2B|ENSG00000222040.3|adrenoceptor alpha 2B
hg19_v2_chr19_+_35521572_35521588	0.0446677	GLI3	ENST00000262631.5|SCN1B|ENSG00000105711.6|sodium channel, voltage-gated, type I, beta subunit
hg19_v2_chr18_-_70534745_70534810	0.0444726	GLI3	ENST00000583169.1|NETO1|ENSG00000166342.14|neuropilin (NRP) and tolloid (TLL)-like 1
hg19_v2_chr15_+_75335604_75335633	0.0444455	GLI3	ENST00000563393.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr10_+_1034338_1034411	0.0444441	GLI3	ENST00000360803.4|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000538293.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr20_-_62587735_62587777	0.0441667	GLI3	ENST00000354216.6|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000369892.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000358711.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr5_+_175490540_175490540	0.0441345	GLI3	ENST00000515817.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr19_-_18197799_18197815	0.0440751	GLI3	ENST00000430026.3|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1 	ENST00000593993.2|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr14_-_64108125_64108217	0.04388	GLI3	ENST00000267522.3|WDR89|ENSG00000140006.7|WD repeat domain 89
hg19_v2_chr11_+_65029421_65029459	0.0438111	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr14_-_39572279_39572340	0.0437572	GLI3	ENST00000536508.1|SEC23A|ENSG00000100934.10|Sec23 homolog A (S. cerevisiae)
hg19_v2_chr16_-_88923285_88923388	0.0436236	GLI3	ENST00000542788.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000569433.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000268695.5|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase 	ENST00000568311.1|GALNS|ENSG00000141012.8|galactosamine (N-acetyl)-6-sulfate sulfatase
hg19_v2_chr1_+_8021954_8022038	0.0435888	GLI3	ENST00000377491.1|PARK7|ENSG00000116288.8|parkinson protein 7 	ENST00000377488.1|PARK7|ENSG00000116288.8|parkinson protein 7
hg19_v2_chr19_-_16653325_16653358	0.0435284	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr21_+_48055527_48055608	0.0433607	GLI3	ENST00000397638.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000458387.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000451211.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000291705.6|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397637.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000334494.4|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397628.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000440086.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2
hg19_v2_chr1_-_227922934_227923112	0.0433348	GLI3	ENST00000366758.3|JMJD4|ENSG00000081692.8|jumonji domain containing 4 	ENST00000438896.2|JMJD4|ENSG00000081692.8|jumonji domain containing 4
hg19_v2_chr19_-_59023348_59023432	0.0431778	GLI3	ENST00000601355.1|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5 	ENST00000263093.2|SLC27A5|ENSG00000083807.5|solute carrier family 27 (fatty acid transporter), member 5
hg19_v2_chr21_-_45079341_45079400	0.0431222	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr16_-_71918033_71918107	0.0430991	GLI3	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chrX_-_134186144_134186228	0.042921	GLI3	ENST00000370775.2|FAM127B|ENSG00000203950.6|family with sequence similarity 127, member B
hg19_v2_chr11_-_796197_796361	0.0428751	GLI3	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr15_+_75315896_75315956	0.0428588	GLI3	ENST00000342932.3|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000564923.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000569562.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000568649.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chrX_+_151999511_151999561	0.0426867	GLI3	ENST00000370274.3|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000440023.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like 	ENST00000432467.1|NSDHL|ENSG00000147383.6|NAD(P) dependent steroid dehydrogenase-like
hg19_v2_chr22_-_21482352_21482352	0.0426436	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr5_-_132112921_132112960	0.0424517	GLI3	ENST00000378721.4|SEPT8|ENSG00000164402.9|septin 8 	ENST00000378701.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr17_-_655278_655425	0.0424162	GLI3	ENST00000574958.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4 	ENST00000437269.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4 	ENST00000573482.1|GEMIN4|ENSG00000179409.6|gem (nuclear organelle) associated protein 4
hg19_v2_chr11_+_64001962_64002033	0.0423199	GLI3	ENST00000309422.2|VEGFB|ENSG00000173511.5|vascular endothelial growth factor B
hg19_v2_chr10_-_75193308_75193325	0.0421955	GLI3	ENST00000299432.2|MSS51|ENSG00000166343.5|MSS51 mitochondrial translational activator
hg19_v2_chr12_-_110883346_110883392	0.0421487	GLI3	ENST00000547365.1|ARPC3|ENSG00000111229.11|actin related protein 2/3 complex, subunit 3, 21kDa
hg19_v2_chr1_-_139379_139379	0.041798	GLI3	ENST00000423372.3|AL627309.1|ENSG00000237683.5|Uncharacterized protein
hg19_v2_chr7_+_916183_916204	0.0413112	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr1_-_11024258_11024258	0.0412807	GLI3	ENST00000418570.2|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr4_-_46391367_46391436	0.0409602	GLI3	ENST00000503806.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000356504.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000514090.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2 	ENST00000506961.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr12_-_30907749_30907794	0.0408842	GLI3	ENST00000542550.1|CAPRIN2|ENSG00000110888.13|caprin family member 2 	ENST00000540584.1|CAPRIN2|ENSG00000110888.13|caprin family member 2
hg19_v2_chr5_-_180237082_180237148	0.0408141	GLI3	ENST00000506889.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr16_+_20817761_20817837	0.040813	GLI3	ENST00000568046.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp  	ENST00000261377.6|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr20_+_57466461_57466482	0.0407108	GLI3	ENST00000306090.10|GNAS|ENSG00000087460.19|GNAS complex locus
hg19_v2_chr1_-_153585539_153585559	0.0406484	GLI3	ENST00000368706.4|S100A16|ENSG00000188643.6|S100 calcium binding protein A16
hg19_v2_chrX_-_47518527_47518587	0.0406446	GLI3	ENST00000333119.3|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr8_-_22526597_22526661	0.0406307	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr3_-_118864893_118864915	0.0405266	GLI3	ENST00000354673.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11 	ENST00000425327.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11
hg19_v2_chr16_-_75299884_75299919	0.0404959	GLI3	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr14_+_23344345_23344383	0.0404607	GLI3	ENST00000551466.1|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr17_-_6735035_6735080	0.0404553	GLI3	ENST00000338694.2|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr15_-_101817492_101817519	0.0402849	GLI3	ENST00000528346.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000531964.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr9_-_5304432_5304719	0.0402849	GLI3	ENST00000416837.1|RLN2|ENSG00000107014.7|relaxin 2 	ENST00000308420.3|RLN2|ENSG00000107014.7|relaxin 2
hg19_v2_chr17_-_47286579_47286624	0.0402376	GLI3	ENST00000515635.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr3_-_150421728_150421746	0.0402335	GLI3	ENST00000295910.6|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A 	ENST00000491361.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr5_+_113769205_113769227	0.0401667	GLI3	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr17_-_79827808_79827882	0.0400637	GLI3	ENST00000580685.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr16_+_66400533_66400545	0.0398548	GLI3	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr11_-_47198380_47198448	0.0395285	GLI3	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr19_-_14992264_14992264	0.039521	GLI3	ENST00000327462.2|OR7A17|ENSG00000185385.2|olfactory receptor, family 7, subfamily A, member 17
hg19_v2_chr22_-_30867973_30868036	0.0390929	GLI3	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr1_-_95285764_95285837	0.0390107	GLI3	ENST00000414374.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000421997.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000418366.2|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000452922.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr17_+_4835580_4835593	0.0389629	GLI3	ENST00000329125.5|GP1BA|ENSG00000185245.6|glycoprotein Ib (platelet), alpha polypeptide
hg19_v2_chr6_+_99282570_99282591	0.0389598	GLI3	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr22_+_46663861_46663886	0.0389031	GLI3	ENST00000381031.3|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38 	ENST00000445282.2|TTC38|ENSG00000075234.12|tetratricopeptide repeat domain 38
hg19_v2_chr11_-_535515_535592	0.0388983	GLI3	ENST00000311189.7|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000451590.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog 	ENST00000417302.1|HRAS|ENSG00000174775.12|Harvey rat sarcoma viral oncogene homolog
hg19_v2_chr1_+_25664408_25664408	0.0388193	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr2_+_25015968_25016029	0.0388125	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr17_-_67323385_67323424	0.0388086	GLI3	ENST00000588665.1|ABCA5|ENSG00000154265.11|ATP-binding cassette, sub-family A (ABC1), member 5
hg19_v2_chr3_-_62860704_62860872	0.038756	GLI3	ENST00000490353.2|CADPS|ENSG00000163618.13|Ca++-dependent secretion activator
hg19_v2_chr9_+_139871948_139871968	0.0386942	GLI3	ENST00000224167.2|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000457950.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371625.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371623.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr7_+_99954224_99954373	0.0386808	GLI3	ENST00000608825.1|PILRB|ENSG00000121716.14|paired immunoglobin-like type 2 receptor beta
hg19_v2_chrX_-_134156502_134156577	0.0386384	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chr12_+_14927270_14927347	0.038582	GLI3	ENST00000544848.1|H2AFJ|ENSG00000246705.3|H2A histone family, member J
hg19_v2_chr15_+_74421961_74422007	0.0385803	GLI3	ENST00000565159.1|ISLR2|ENSG00000167178.11|immunoglobulin superfamily containing leucine-rich repeat 2 	ENST00000567206.1|ISLR2|ENSG00000167178.11|immunoglobulin superfamily containing leucine-rich repeat 2
hg19_v2_chr19_-_45926739_45926863	0.0383499	GLI3	ENST00000589381.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000591636.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000013807.5|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) 	ENST00000592023.1|ERCC1|ENSG00000012061.11|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
hg19_v2_chr20_+_48599506_48599536	0.0383359	GLI3	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr14_+_105927191_105927231	0.0382714	GLI3	ENST00000550551.1|MTA1|ENSG00000182979.13|metastasis associated 1
hg19_v2_chr1_+_32479430_32479597	0.0381738	GLI3	ENST00000327300.7|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1 	ENST00000492989.1|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1
hg19_v2_chrX_+_49020882_49020882	0.0380871	GLI3	ENST00000454342.1|MAGIX|ENSG00000017621.11|MAGI family member, X-linked
hg19_v2_chr1_-_46152174_46152302	0.037972	GLI3	ENST00000290795.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1 	ENST00000355105.3|GPBP1L1|ENSG00000159592.6|GC-rich promoter binding protein 1-like 1
hg19_v2_chr1_+_210111570_210111603	0.0378188	GLI3	ENST00000367019.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000472886.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr6_+_2988847_2988908	0.0376791	GLI3	ENST00000380472.3|NQO2|ENSG00000124588.15|NAD(P)H dehydrogenase, quinone 2 	ENST00000605901.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011 	ENST00000454015.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011
hg19_v2_chr16_-_89268070_89268100	0.0376413	GLI3	ENST00000562855.2|SLC22A31|ENSG00000259803.2|solute carrier family 22, member 31
hg19_v2_chr8_+_16884740_16884804	0.0376331	GLI3	ENST00000318063.5|MICU3|ENSG00000155970.7|mitochondrial calcium uptake family, member 3
hg19_v2_chr6_+_41010293_41010457	0.0376204	GLI3	ENST00000373161.1|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000373158.2|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000470917.1|TSPO2|ENSG00000112212.7|translocator protein 2
hg19_v2_chr15_-_57025728_57025743	0.0376148	GLI3	ENST00000559352.1|ZNF280D|ENSG00000137871.15|zinc finger protein 280D
hg19_v2_chr7_+_104581389_104581653	0.0376089	GLI3	ENST00000415513.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2	ENST00000417026.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2
hg19_v2_chr19_+_4198072_4198137	0.0375653	GLI3	ENST00000262970.5|ANKRD24|ENSG00000089847.8|ankyrin repeat domain 24
hg19_v2_chr14_-_92414294_92414355	0.0374417	GLI3	ENST00000554468.1|FBLN5|ENSG00000140092.10|fibulin 5
hg19_v2_chr9_-_134406565_134406608	0.0373819	GLI3	ENST00000372210.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1 	ENST00000372211.3|UCK1|ENSG00000130717.8|uridine-cytidine kinase 1
hg19_v2_chr5_+_76506706_76506787	0.0373221	GLI3	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr1_-_16678914_16678989	0.037269	GLI3	ENST00000375592.3|FBXO42|ENSG00000037637.6|F-box protein 42
hg19_v2_chr21_-_28215332_28215347	0.0367341	GLI3	ENST00000517777.1|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr5_-_180668605_180668649	0.0367271	GLI3	ENST00000504128.1|GNB2L1|ENSG00000204628.7|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
hg19_v2_chr1_+_207669573_207669606	0.03668	GLI3	ENST00000400960.2|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000534202.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr12_+_54943134_54943182	0.0364958	GLI3	ENST00000243052.3|PDE1B|ENSG00000123360.7|phosphodiesterase 1B, calmodulin-dependent
hg19_v2_chr1_-_11865982_11866005	0.0362922	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr7_+_2443202_2443260	0.036215	GLI3	ENST00000258711.6|CHST12|ENSG00000136213.7|carbohydrate (chondroitin 4) sulfotransferase 12
hg19_v2_chr11_-_414948_415017	0.0361871	GLI3	ENST00000530494.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528209.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000431843.2|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528058.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chrX_+_2984874_2984874	0.0361644	GLI3	ENST00000359361.2|ARSF|ENSG00000062096.10|arylsulfatase F
hg19_v2_chr3_-_15140629_15140670	0.0360209	GLI3	ENST00000507357.1|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000449050.1|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000253699.3|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000435849.3|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20 	ENST00000476527.2|ZFYVE20|ENSG00000131381.8|zinc finger, FYVE domain containing 20
hg19_v2_chr1_-_208084387_208084511	0.0358948	GLI3	ENST00000537704.1|CD34|ENSG00000174059.12|CD34 molecule
hg19_v2_chr9_-_130524695_130524736	0.0357039	GLI3	ENST00000440630.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000429553.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr17_-_7307358_7307456	0.0356588	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.3|transmembrane protein 256 	ENST00000535512.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000302422.3|TMEM256|ENSG00000205544.3|transmembrane protein 256
hg19_v2_chrX_-_152245978_152245978	0.0352986	GLI3	ENST00000538162.2|PNMA6D|ENSG00000257088.2|paraneoplastic Ma antigen family member 6D (pseudogene)
hg19_v2_chr1_-_22222764_22222805	0.0352928	GLI3	ENST00000439717.2|HSPG2|ENSG00000142798.12|heparan sulfate proteoglycan 2 	ENST00000412328.1|HSPG2|ENSG00000142798.12|heparan sulfate proteoglycan 2
hg19_v2_chr16_+_30937213_30937213	0.035274	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr16_-_86588627_86588848	0.0351262	GLI3	ENST00000565482.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000564364.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561989.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000543303.2|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000381214.5|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000360900.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000322911.6|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000546093.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000569000.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000562994.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing 	ENST00000561522.1|MTHFSD|ENSG00000103248.13|methenyltetrahydrofolate synthetase domain containing
hg19_v2_chr17_-_1419878_1419912	0.0351253	GLI3	ENST00000449479.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000477910.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000542125.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000575172.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr2_+_235903480_235903488	0.0349945	GLI3	ENST00000454947.1|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr17_-_43025005_43025149	0.0349582	GLI3	ENST00000587309.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000593135.1|KIF18B|ENSG00000186185.9|kinesin family member 18B 	ENST00000339151.4|KIF18B|ENSG00000186185.9|kinesin family member 18B
hg19_v2_chr11_+_65819802_65819871	0.0349103	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr8_-_33457453_33457624	0.0348981	GLI3	ENST00000523956.1|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative) 	ENST00000256261.4|DUSP26|ENSG00000133878.4|dual specificity phosphatase 26 (putative)
hg19_v2_chr17_-_21117902_21117937	0.0348942	GLI3	ENST00000317635.5|TMEM11|ENSG00000178307.5|transmembrane protein 11
hg19_v2_chr7_-_4923315_4923360	0.034544	GLI3	ENST00000399583.3|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr17_-_2207062_2207116	0.0345334	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr10_-_77161533_77161590	0.0344311	GLI3	ENST00000535216.1|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr17_-_34808047_34808104	0.0344009	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr16_-_57832004_57832027	0.0343646	GLI3	ENST00000562503.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr11_+_71939512_71939550	0.0343303	GLI3	ENST00000540329.1|INPPL1|ENSG00000165458.9|inositol polyphosphate phosphatase-like 1
hg19_v2_chr1_+_28655505_28655629	0.0342204	GLI3	ENST00000373842.4|MED18|ENSG00000130772.9|mediator complex subunit 18 	ENST00000398997.2|MED18|ENSG00000130772.9|mediator complex subunit 18
hg19_v2_chr13_+_51796497_51796517	0.0340686	GLI3	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr17_+_75450146_75450170	0.0340535	GLI3	ENST00000585929.1|SEPT9|ENSG00000184640.13|septin 9 	ENST00000590917.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr8_+_22102611_22102624	0.03404	GLI3	ENST00000306433.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr9_-_139891165_139891255	0.0338199	GLI3	ENST00000494426.1|CLIC3|ENSG00000169583.12|chloride intracellular channel 3
hg19_v2_chrX_-_19504642_19504642	0.0338077	GLI3	ENST00000469203.2|MAP3K15|ENSG00000180815.10|mitogen-activated protein kinase kinase kinase 15
hg19_v2_chr7_-_155089251_155089375	0.0336867	GLI3	ENST00000609974.1|AC144652.1|ENSG00000273117.1|AC144652.1
hg19_v2_chr1_+_247901917_247901917	0.0336865	GLI3	ENST00000283225.2|OR14K1|ENSG00000153230.4|olfactory receptor, family 14, subfamily K, member 1
hg19_v2_chr15_-_26108355_26108417	0.0336857	GLI3	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr15_+_42566384_42566475	0.0336261	GLI3	ENST00000440615.2|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C 	ENST00000318010.8|GANC|ENSG00000214013.5|glucosidase, alpha; neutral C
hg19_v2_chr8_-_21771214_21771371	0.0335435	GLI3	ENST00000276420.4|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr16_-_30064244_30064299	0.0334449	GLI3	ENST00000571269.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B 	ENST00000561666.1|FAM57B|ENSG00000149926.9|family with sequence similarity 57, member B
hg19_v2_chr1_+_32671236_32671280	0.0333557	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr17_-_40540377_40540481	0.0332784	GLI3	ENST00000404395.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000389272.3|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000585517.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor) 	ENST00000588065.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr19_-_2050852_2050895	0.0332685	GLI3	ENST00000541165.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2 	ENST00000591601.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr17_-_46178649_46178711	0.0330548	GLI3	ENST00000495350.1|CBX1|ENSG00000108468.10|chromobox homolog 1 	ENST00000402583.1|CBX1|ENSG00000108468.10|chromobox homolog 1
hg19_v2_chr19_-_10464570_10464754	0.0330133	GLI3	ENST00000529739.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr1_-_1243252_1243318	0.033007	GLI3	ENST00000353662.3|ACAP3|ENSG00000131584.14|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
hg19_v2_chr1_+_11994715_11994833	0.0327979	GLI3	ENST00000449038.1|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000376369.3|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000429000.2|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 	ENST00000196061.4|PLOD1|ENSG00000083444.12|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
hg19_v2_chr7_-_47579188_47579231	0.0327236	GLI3	ENST00000398879.1|TNS3|ENSG00000136205.12|tensin 3 	ENST00000355730.3|TNS3|ENSG00000136205.12|tensin 3 	ENST00000442536.2|TNS3|ENSG00000136205.12|tensin 3 	ENST00000458317.2|TNS3|ENSG00000136205.12|tensin 3
hg19_v2_chr11_+_64085560_64085736	0.0326896	GLI3	ENST00000265462.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000352435.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5 	ENST00000347941.4|PRDX5|ENSG00000126432.9|peroxiredoxin 5
hg19_v2_chr4_-_89080003_89080075	0.0324537	GLI3	ENST00000237612.3|ABCG2|ENSG00000118777.6|ATP-binding cassette, sub-family G (WHITE), member 2
hg19_v2_chr12_+_106994905_106994954	0.0324046	GLI3	ENST00000357881.4|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr22_+_39898325_39898382	0.0323726	GLI3	ENST00000325301.2|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1 	ENST00000404569.1|MIEF1|ENSG00000100335.8|mitochondrial elongation factor 1
hg19_v2_chr9_-_101017862_101017897	0.0323086	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr4_-_48908805_48908821	0.0322086	GLI3	ENST00000273860.4|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr2_-_95787738_95787763	0.0321732	GLI3	ENST00000272418.2|MRPS5|ENSG00000144029.7|mitochondrial ribosomal protein S5
hg19_v2_chr11_+_18194384_18194384	0.0321474	GLI3	ENST00000314254.3|MRGPRX4|ENSG00000179817.3|MAS-related GPR, member X4
hg19_v2_chrX_+_49178536_49178536	0.0319714	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr8_+_22436635_22436663	0.0317709	GLI3	ENST00000452226.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397760.4|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000339162.7|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique) 	ENST00000397761.2|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr6_-_35480640_35480653	0.0316761	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.8|tubby like protein 1 	ENST00000322263.4|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chrX_-_138287168_138287192	0.0316537	GLI3	ENST00000436198.1|FGF13|ENSG00000129682.9|fibroblast growth factor 13
hg19_v2_chr6_+_163148161_163148181	0.0315335	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr2_-_47382414_47382431	0.031499	GLI3	ENST00000294947.2|C2orf61|ENSG00000239605.4|chromosome 2 open reading frame 61
hg19_v2_chr17_-_26127525_26127556	0.0313893	GLI3	ENST00000313735.6|NOS2|ENSG00000007171.12|nitric oxide synthase 2, inducible
hg19_v2_chr4_+_79567233_79567248	0.0313076	GLI3	ENST00000514130.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr1_+_47603109_47603127	0.031239	GLI3	ENST00000371890.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000294337.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22 	ENST00000371891.3|CYP4A22|ENSG00000162365.7|cytochrome P450, family 4, subfamily A, polypeptide 22
hg19_v2_chr6_+_34204642_34204664	0.0311576	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr2_-_208031542_208031595	0.0311513	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr16_+_2880254_2880278	0.0311497	GLI3	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chrX_-_153707545_153707596	0.031149	GLI3	ENST00000357360.4|LAGE3|ENSG00000196976.5|L antigen family, member 3
hg19_v2_chr16_+_16043406_16043434	0.0309294	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr19_-_2041159_2041206	0.0309242	GLI3	ENST00000589441.1|MKNK2|ENSG00000099875.10|MAP kinase interacting serine/threonine kinase 2
hg19_v2_chr17_+_46018872_46019006	0.0309147	GLI3	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chr12_-_52887034_52887049	0.0308732	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr1_+_207669613_207669686	0.0305348	GLI3	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr5_+_179247759_179247921	0.0305089	GLI3	ENST00000389805.4|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000504627.1|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000402874.3|SQSTM1|ENSG00000161011.15|sequestosome 1 	ENST00000510187.1|SQSTM1|ENSG00000161011.15|sequestosome 1
hg19_v2_chrX_-_48216101_48216142	0.0303204	GLI3	ENST00000298396.2|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3 	ENST00000376893.3|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3
hg19_v2_chr1_+_1550795_1550927	0.0300529	GLI3	ENST00000520777.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000357210.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000360522.4|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000378710.3|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000355826.5|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000518681.1|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2 	ENST00000505820.2|MIB2|ENSG00000197530.8|mindbomb E3 ubiquitin protein ligase 2
hg19_v2_chr7_-_33148975_33149050	0.0300131	GLI3	ENST00000297157.3|RP9|ENSG00000164610.4|retinitis pigmentosa 9 (autosomal dominant)
hg19_v2_chrX_+_152240819_152240839	0.0299715	GLI3	ENST00000421798.3|PNMA6C|ENSG00000235961.3|paraneoplastic Ma antigen family member 6C 	ENST00000535416.1|PNMA6A|ENSG00000224201.3|paraneoplastic Ma antigen family member 6A
hg19_v2_chr7_+_150688083_150688106	0.0297173	GLI3	ENST00000297494.3|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr17_-_40540484_40540537	0.0296616	GLI3	ENST00000588969.1|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chrX_-_152939780_152939823	0.0296585	GLI3	ENST00000370142.1|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000393831.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase 	ENST00000447676.2|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr19_+_12305824_12305890	0.0296571	GLI3	ENST00000415793.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1	ENST00000440004.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1	ENST00000426044.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1
hg19_v2_chr9_+_6758109_6758131	0.0295689	GLI3	ENST00000536108.1|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr11_-_74442430_74442481	0.0295198	GLI3	ENST00000376332.3|CHRDL2|ENSG00000054938.11|chordin-like 2
hg19_v2_chr2_+_131769256_131769328	0.0295136	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr11_-_113346111_113346125	0.0293855	GLI3	ENST00000362072.3|DRD2|ENSG00000149295.9|dopamine receptor D2
hg19_v2_chr17_-_73266616_73266702	0.0293462	GLI3	ENST00000579194.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing 	ENST00000581777.1|MIF4GD|ENSG00000125457.9|MIF4G domain containing
hg19_v2_chr7_-_2595337_2595361	0.0292743	GLI3	ENST00000340611.4|BRAT1|ENSG00000106009.11|BRCA1-associated ATM activator 1
hg19_v2_chr16_+_55689991_55690000	0.0292427	GLI3	ENST00000568529.2|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr1_-_110155671_110155685	0.0291236	GLI3	ENST00000351050.3|GNAT2|ENSG00000134183.7|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
hg19_v2_chr22_-_20461786_20461786	0.0289892	GLI3	ENST00000426804.1|RIMBP3|ENSG00000196622.6|RIMS binding protein 3
hg19_v2_chr19_+_58978463_58978476	0.0286454	GLI3	ENST00000196482.3|ZNF324|ENSG00000083812.7|zinc finger protein 324
hg19_v2_chr18_-_60987220_60987386	0.0285964	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr20_-_36889127_36889174	0.0285954	GLI3	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr19_-_6379069_6379069	0.0285708	GLI3	ENST00000597721.1|PSPN|ENSG00000125650.4|persephin
hg19_v2_chr8_+_94929168_94929235	0.028463	GLI3	ENST00000518107.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1 	ENST00000396200.3|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr14_+_71165292_71165415	0.0284354	GLI3	ENST00000553682.1|RP6-65G23.1|ENSG00000258689.1|RP6-65G23.1
hg19_v2_chr2_-_27545921_27545981	0.0284191	GLI3	ENST00000402310.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405983.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000403262.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000428910.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000402722.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000399052.4|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000380044.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein 	ENST00000405076.1|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr12_-_10607084_10607284	0.0283428	GLI3	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr11_+_64073699_64073918	0.0283101	GLI3	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr5_-_180018540_180018549	0.0282457	GLI3	ENST00000292641.3|SCGB3A1|ENSG00000161055.3|secretoglobin, family 3A, member 1
hg19_v2_chr3_+_16926441_16926463	0.0280123	GLI3	ENST00000418129.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2 	ENST00000396755.2|PLCL2|ENSG00000154822.11|phospholipase C-like 2
hg19_v2_chr19_+_18699535_18699591	0.027968	GLI3	ENST00000358607.6|C19orf60|ENSG00000006015.13|chromosome 19 open reading frame 60
hg19_v2_chr22_-_50451088_50451199	0.0278387	GLI3	ENST00000389983.2|IL17REL|ENSG00000188263.6|interleukin 17 receptor E-like
hg19_v2_chr4_-_111120132_111120167	0.0276646	GLI3	ENST00000506625.1|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr4_+_140374961_140375016	0.0275867	GLI3	ENST00000305626.5|RAB33B|ENSG00000172007.5|RAB33B, member RAS oncogene family
hg19_v2_chr9_-_34381511_34381529	0.0274433	GLI3	ENST00000379124.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr17_+_8339340_8339412	0.0273898	GLI3	ENST00000580012.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr1_+_43735646_43735665	0.0273596	GLI3	ENST00000439858.1|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr11_+_69931519_69931528	0.0273199	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr8_+_121137333_121137352	0.0272729	GLI3	ENST00000309791.4|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000297848.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000247781.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1
hg19_v2_chr17_+_6899366_6899384	0.0270829	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr1_+_3385085_3385108	0.0268283	GLI3	ENST00000445297.1|ARHGEF16|ENSG00000130762.10|Rho guanine nucleotide exchange factor (GEF) 16
hg19_v2_chr9_-_101017900_101017951	0.0266792	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr1_-_201368707_201368760	0.0266158	GLI3	ENST00000391967.2|LAD1|ENSG00000159166.9|ladinin 1
hg19_v2_chr9_-_98279241_98279339	0.0265823	GLI3	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr22_+_31644388_31644473	0.0264594	GLI3	ENST00000333611.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000340552.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr6_+_116601265_116601288	0.0264592	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr5_-_6633397_6633445	0.0263987	GLI3	ENST00000264670.6|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2 	ENST00000539938.1|NSUN2|ENSG00000037474.10|NOP2/Sun RNA methyltransferase family, member 2
hg19_v2_chr20_+_18568537_18568585	0.0263852	GLI3	ENST00000377452.3|DTD1|ENSG00000125821.7|D-tyrosyl-tRNA deacylase 1
hg19_v2_chr22_-_25170683_25170683	0.026281	GLI3	ENST00000332271.5|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr19_-_58090240_58090295	0.0262733	GLI3	ENST00000196489.3|ZNF416|ENSG00000083817.8|zinc finger protein 416
hg19_v2_chr1_+_153940741_153940786	0.026181	GLI3	ENST00000431292.1|CREB3L4|ENSG00000143578.11|cAMP responsive element binding protein 3-like 4
hg19_v2_chr22_-_18507279_18507364	0.0261265	GLI3	ENST00000441493.2|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000444520.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000207726.7|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENST00000429452.1|MICAL3|ENSG00000243156.3|microtubule associated monooxygenase, calponin and LIM domain containing 3
hg19_v2_chr11_+_73588014_73588073	0.0261249	GLI3	ENST00000310571.3|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000504441.2|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000543814.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000535604.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000542293.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000536003.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1 	ENST00000544552.1|PAAF1|ENSG00000175575.8|proteasomal ATPase-associated factor 1
hg19_v2_chr11_+_18230727_18230755	0.0259293	GLI3	ENST00000527059.1|RP11-113D6.10|ENSG00000189332.4|Putative mitochondrial carrier protein LOC494141
hg19_v2_chr4_+_1283639_1283705	0.0258953	GLI3	ENST00000303400.4|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000505177.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000503653.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000264750.6|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000502558.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000452175.2|MAEA|ENSG00000090316.11|macrophage erythroblast attacher 	ENST00000514708.1|MAEA|ENSG00000090316.11|macrophage erythroblast attacher
hg19_v2_chr14_-_102976091_102976133	0.0258718	GLI3	ENST00000286918.4|ANKRD9|ENSG00000156381.4|ankyrin repeat domain 9
hg19_v2_chr2_-_27333965_27333971	0.0258432	GLI3	ENST00000452318.2|CGREF1|ENSG00000138028.10|cell growth regulator with EF-hand domain 1
hg19_v2_chr5_+_154238149_154238267	0.0257017	GLI3	ENST00000519430.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000520671.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000521583.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518028.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519404.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519394.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518775.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr1_-_110306562_110306649	0.0256756	GLI3	ENST00000369805.3|EPS8L3|ENSG00000198758.6|EPS8-like 3
hg19_v2_chr6_-_163834852_163834992	0.025583	GLI3	ENST00000604200.1|CAHM|ENSG00000270419.1|colon adenocarcinoma hypermethylated (non-protein coding)
hg19_v2_chr19_-_3480540_3480555	0.0255643	GLI3	ENST00000215531.4|C19orf77|ENSG00000095932.5|chromosome 19 open reading frame 77
hg19_v2_chr19_+_41117770_41117817	0.0255565	GLI3	ENST00000601032.1|LTBP4|ENSG00000090006.13|latent transforming growth factor beta binding protein 4
hg19_v2_chr7_+_106810165_106810374	0.0255365	GLI3	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr3_+_124355944_124356002	0.0255094	GLI3	ENST00000459915.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr19_+_9945962_9946023	0.025248	GLI3	ENST00000587625.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000247970.4|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1 	ENST00000588695.1|PIN1|ENSG00000127445.9|peptidylprolyl cis/trans isomerase, NIMA-interacting 1
hg19_v2_chrX_+_107334983_107335024	0.0252086	GLI3	ENST00000457035.1|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000545696.1|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase
hg19_v2_chr5_-_180242534_180242567	0.0251087	GLI3	ENST00000333055.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 	ENST00000513431.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr17_+_7184986_7185076	0.0250153	GLI3	ENST00000317370.8|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4 	ENST00000571308.1|SLC2A4|ENSG00000181856.10|solute carrier family 2 (facilitated glucose transporter), member 4
hg19_v2_chr12_-_8218997_8219067	0.0250043	GLI3	ENST00000307637.4|C3AR1|ENSG00000171860.4|complement component 3a receptor 1
hg19_v2_chr22_+_21213771_21213788	0.0249965	GLI3	ENST00000439214.1|SNAP29|ENSG00000099940.7|synaptosomal-associated protein, 29kDa
hg19_v2_chr8_-_119634141_119634234	0.0248825	GLI3	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr12_-_82152420_82152441	0.0248197	GLI3	ENST00000552948.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000548586.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr22_-_20255212_20255212	0.0246396	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr16_-_88717482_88717560	0.0246258	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr1_+_6845384_6845494	0.024493	GLI3	ENST00000303635.7|CAMTA1|ENSG00000171735.14|calmodulin binding transcription activator 1
hg19_v2_chr10_+_11060004_11060106	0.0244822	GLI3	ENST00000542579.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000399850.3|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000417956.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr14_-_21492113_21492227	0.0244789	GLI3	ENST00000554094.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr4_+_77172847_77172897	0.0243308	GLI3	ENST00000515604.1|FAM47E|ENSG00000272414.1|uncharacterized protein LOC100631383  	ENST00000539752.1|FAM47E-STBD1|ENSG00000118804.7|FAM47E-STBD1 readthrough 	ENST00000424749.2|FAM47E|ENSG00000189157.9|family with sequence similarity 47, member E
hg19_v2_chr21_+_45079409_45079452	0.0242855	GLI3	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chr1_+_92414928_92414944	0.0241848	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chr20_-_49253425_49253427	0.0240276	GLI3	ENST00000045083.2|FAM65C|ENSG00000042062.7|family with sequence similarity 65, member C
hg19_v2_chr10_+_43633914_43633935	0.0240248	GLI3	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr1_-_11007927_11007927	0.0240183	GLI3	ENST00000468348.1|C1orf127|ENSG00000175262.10|chromosome 1 open reading frame 127
hg19_v2_chr14_-_91976874_91976905	0.0240137	GLI3	ENST00000557018.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr12_-_82153087_82153138	0.0239533	GLI3	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr10_+_1034646_1034660	0.0238953	GLI3	ENST00000360059.5|GTPBP4|ENSG00000107937.14|GTP binding protein 4 	ENST00000545048.1|GTPBP4|ENSG00000107937.14|GTP binding protein 4
hg19_v2_chr4_+_79567314_79567348	0.0238713	GLI3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr9_+_131218408_131218487	0.0238497	GLI3	ENST00000351030.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000604420.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000535026.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000448249.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000393527.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr12_-_45269430_45269440	0.0238204	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_+_52750930_52750950	0.0237779	GLI3	ENST00000401604.2|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr7_-_151107106_151107129	0.023483	GLI3	ENST00000334493.6|WDR86|ENSG00000187260.11|WD repeat domain 86
hg19_v2_chr12_-_21927736_21927768	0.0233599	GLI3	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr20_+_39765581_39765646	0.0233133	GLI3	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr17_+_7761013_7761074	0.0233057	GLI3	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr8_-_21771182_21771208	0.0231384	GLI3	ENST00000523932.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa 	ENST00000544659.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr1_-_115053781_115053853	0.0231339	GLI3	ENST00000358465.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33 	ENST00000369543.2|TRIM33|ENSG00000197323.6|tripartite motif containing 33
hg19_v2_chrX_-_64196351_64196372	0.0230882	GLI3	ENST00000374839.3|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr19_+_7011509_7011526	0.0230643	GLI3	ENST00000377296.3|AC025278.1|ENSG00000204752.3|Uncharacterized protein
hg19_v2_chr19_-_4454081_4454090	0.022926	GLI3	ENST00000591919.1|UBXN6|ENSG00000167671.7|UBX domain protein 6
hg19_v2_chr19_-_49015050_49015111	0.0229173	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr20_-_58508359_58508420	0.0228811	GLI3	ENST00000446834.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr5_+_175487692_175487692	0.0228023	GLI3	ENST00000510151.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr3_-_38992052_38992052	0.0228006	GLI3	ENST00000302328.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000450244.1|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit 	ENST00000444237.2|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr19_-_41196534_41196568	0.0227212	GLI3	ENST00000252891.4|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr1_+_55464600_55464608	0.022566	GLI3	ENST00000371265.4|BSND|ENSG00000162399.6|Bartter syndrome, infantile, with sensorineural deafness (Barttin)
hg19_v2_chr16_+_68071816_68071973	0.0225195	GLI3	ENST00000562246.1|DUS2|ENSG00000167264.13|dihydrouridine synthase 2
hg19_v2_chr5_-_95297678_95297775	0.0224563	GLI3	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr16_-_17564738_17564834	0.0222816	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr14_+_93118813_93118870	0.0222743	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr17_-_43502987_43503004	0.0222537	GLI3	ENST00000376922.2|ARHGAP27|ENSG00000159314.7|Rho GTPase activating protein 27
hg19_v2_chr17_-_40540586_40540600	0.0221482	GLI3	ENST00000264657.5|STAT3|ENSG00000168610.10|signal transducer and activator of transcription 3 (acute-phase response factor)
hg19_v2_chr16_+_31044812_31044931	0.0221223	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr8_+_145133493_145133551	0.0218452	GLI3	ENST00000316052.5|EXOSC4|ENSG00000178896.6|exosome component 4 	ENST00000525936.1|EXOSC4|ENSG00000178896.6|exosome component 4
hg19_v2_chr22_+_29279552_29279586	0.0217777	GLI3	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr2_+_65215604_65215625	0.0216789	GLI3	ENST00000531327.1|SLC1A4|ENSG00000115902.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
hg19_v2_chr6_+_90272339_90272367	0.0216728	GLI3	ENST00000522779.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr7_+_87563557_87563735	0.0216223	GLI3	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr4_-_17812309_17812394	0.0215478	GLI3	ENST00000382247.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16 	ENST00000536863.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16
hg19_v2_chr19_-_35626104_35626161	0.021461	GLI3	ENST00000310123.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4 	ENST00000392225.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4
hg19_v2_chr19_-_12886327_12886434	0.021414	GLI3	ENST00000397668.3|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000587178.1|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2 	ENST00000264827.5|HOOK2|ENSG00000095066.7|hook microtubule-tethering protein 2
hg19_v2_chr11_+_832804_832887	0.0213638	GLI3	ENST00000397420.3|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525718.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chrX_+_135229600_135229624	0.0213546	GLI3	ENST00000370690.3|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr12_+_50017327_50017403	0.0211877	GLI3	ENST00000261897.1|PRPF40B|ENSG00000110844.9|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
hg19_v2_chr4_+_671711_671765	0.0211439	GLI3	ENST00000400159.2|MYL5|ENSG00000215375.2|myosin, light chain 5, regulatory
hg19_v2_chr19_-_54693401_54693491	0.0211223	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr19_+_1248547_1248562	0.0210032	GLI3	ENST00000586757.1|MIDN|ENSG00000167470.8|midnolin 	ENST00000300952.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chrX_-_17878827_17878846	0.0206439	GLI3	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chrX_-_64196307_64196338	0.0206376	GLI3	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chr17_-_71308119_71308159	0.0205171	GLI3	ENST00000439510.2|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000581014.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4 	ENST00000579611.1|CDC42EP4|ENSG00000179604.8|CDC42 effector protein (Rho GTPase binding) 4
hg19_v2_chr19_+_18283959_18283993	0.0204813	GLI3	ENST00000597802.2|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr1_+_12977513_12977513	0.0201995	GLI3	ENST00000330881.5|PRAMEF7|ENSG00000204510.1|PRAME family member 7
hg19_v2_chr7_+_1126437_1126458	0.0201993	GLI3	ENST00000413368.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1 	ENST00000397092.1|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr12_-_118490217_118490269	0.0201565	GLI3	ENST00000542304.1|WSB2|ENSG00000176871.4|WD repeat and SOCS box containing 2
hg19_v2_chr2_+_131862872_131862885	0.0199666	GLI3	ENST00000439822.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr12_-_96184913_96184938	0.019851	GLI3	ENST00000538383.1|NTN4|ENSG00000074527.7|netrin 4
hg19_v2_chr16_-_75300679_75300808	0.0196525	GLI3	ENST00000420641.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr16_-_69390209_69390209	0.0195676	GLI3	ENST00000563634.1|RP11-343C2.9|ENSG00000260371.1|Uncharacterized protein
hg19_v2_chr5_+_179159813_179159851	0.0195269	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr1_+_26869597_26869637	0.0195067	GLI3	ENST00000530003.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr17_+_42219267_42219329	0.0194913	GLI3	ENST00000319977.4|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53 	ENST00000585683.1|C17orf53|ENSG00000125319.10|chromosome 17 open reading frame 53
hg19_v2_chr12_+_50366620_50366735	0.0194478	GLI3	ENST00000315520.5|AQP6|ENSG00000086159.8|aquaporin 6, kidney specific
hg19_v2_chr17_-_1420006_1420036	0.0192144	GLI3	ENST00000320345.6|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K 	ENST00000406424.4|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr16_-_2318055_2318104	0.0191356	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr1_-_243418344_243418356	0.0188861	GLI3	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chrX_+_16185836_16185836	0.0187647	GLI3	ENST00000400003.1|MAGEB17|ENSG00000182798.6|melanoma antigen family B, 17
hg19_v2_chr12_-_7261772_7261874	0.0187184	GLI3	ENST00000545280.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000543933.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000545337.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000544702.1|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like 	ENST00000266542.4|C1RL|ENSG00000139178.6|complement component 1, r subcomponent-like
hg19_v2_chr12_-_82152444_82152475	0.0185453	GLI3	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr11_-_46615498_46615675	0.0184239	GLI3	ENST00000533727.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000534300.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000528950.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1 	ENST00000526606.1|AMBRA1|ENSG00000110497.10|autophagy/beclin-1 regulator 1
hg19_v2_chr1_+_47901689_47901689	0.0183421	GLI3	ENST00000334793.5|FOXD2|ENSG00000186564.5|forkhead box D2
hg19_v2_chr19_+_39833036_39833108	0.018323	GLI3	ENST00000602243.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000598913.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000314471.6|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B
hg19_v2_chr1_-_26232522_26232644	0.0182452	GLI3	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr3_+_238427_238455	0.0182233	GLI3	ENST00000397491.2|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr16_-_89043377_89043406	0.0181934	GLI3	ENST00000436887.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000448839.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000360302.2|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr3_+_46598888_46598888	0.0181686	GLI3	ENST00000599511.1|LUZPP1|ENSG00000268324.1|HCG1777807; Leucine zipper protein 3; Uncharacterized protein
hg19_v2_chr15_+_45694567_45694626	0.0181067	GLI3	ENST00000559860.1|SPATA5L1|ENSG00000171763.13|spermatogenesis associated 5-like 1
hg19_v2_chr9_+_109625378_109625458	0.0179203	GLI3	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chrX_-_119077695_119077757	0.0178632	GLI3	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chr12_+_122326662_122326768	0.0175728	GLI3	ENST00000261817.2|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000538613.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 	ENST00000542602.1|PSMD9|ENSG00000110801.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
hg19_v2_chr4_-_1657135_1657135	0.0174775	GLI3	ENST00000489029.1|FAM53A|ENSG00000174137.8|family with sequence similarity 53, member A
hg19_v2_chr12_-_45270151_45270162	0.0173666	GLI3	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr17_+_75450075_75450094	0.0173639	GLI3	ENST00000592951.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr5_+_179078298_179078298	0.0172354	GLI3	ENST00000418535.2|AC136604.1|ENSG00000228259.2|Uncharacterized protein  	ENST00000425471.1|AC136604.1|ENSG00000228259.2|Uncharacterized protein
hg19_v2_chr9_+_112542591_112542769	0.0171641	GLI3	ENST00000483909.1|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000314527.4|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000413420.1|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000302798.7|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000555236.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000510514.5|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chrX_-_2418936_2419024	0.0169694	GLI3	ENST00000461691.1|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381223.4|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381222.2|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000412516.2|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked 	ENST00000334651.5|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked
hg19_v2_chr4_+_3344141_3344178	0.0169626	GLI3	ENST00000306648.7|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr9_+_103204553_103204560	0.0169279	GLI3	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr3_-_195538728_195538754	0.0166242	GLI3	ENST00000349607.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated 	ENST00000346145.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr11_+_46403303_46403316	0.0164807	GLI3	ENST00000407067.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395565.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr21_+_40752170_40752303	0.0164511	GLI3	ENST00000333781.5|WRB|ENSG00000182093.10|tryptophan rich basic protein 	ENST00000541890.1|WRB|ENSG00000182093.10|tryptophan rich basic protein
hg19_v2_chr17_+_46184911_46184951	0.0164344	GLI3	ENST00000580219.1|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000452859.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000393405.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000439357.2|SNX11|ENSG00000002919.10|sorting nexin 11 	ENST00000359238.2|SNX11|ENSG00000002919.10|sorting nexin 11
hg19_v2_chr2_-_171627269_171627285	0.0162822	GLI3	ENST00000442456.1|AC007405.4|ENSG00000234350.1|AC007405.4
hg19_v2_chr9_+_87285257_87285311	0.0162496	GLI3	ENST00000323115.4|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr16_+_28996416_28996444	0.0162356	GLI3	ENST00000395456.2|LAT|ENSG00000213658.6|linker for activation of T cells 	ENST00000454369.2|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chrX_+_15525426_15525441	0.0161551	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr12_-_76377795_76377810	0.0160244	GLI3	ENST00000552856.1|RP11-114H23.1|ENSG00000258077.2|RP11-114H23.1
hg19_v2_chr17_-_9923302_9923459	0.0159603	GLI3	ENST00000579158.1|GAS7|ENSG00000007237.14|growth arrest-specific 7 	ENST00000542249.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr1_-_226111929_226112026	0.0157765	GLI3	ENST00000343818.6|PYCR2|ENSG00000143811.12|pyrroline-5-carboxylate reductase family, member 2 	ENST00000432920.2|RP4-559A3.7|ENSG00000255835.1|Uncharacterized protein
hg19_v2_chr2_-_24308051_24308085	0.0157353	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr7_+_29846099_29846181	0.0157292	GLI3	ENST00000409123.1|WIPF3|ENSG00000122574.6|WAS/WASL interacting protein family, member 3
hg19_v2_chr4_-_96470350_96470373	0.0156978	GLI3	ENST00000504962.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000453304.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000506749.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr13_-_25861530_25861704	0.0155195	GLI3	ENST00000540661.1|MTMR6|ENSG00000139505.10|myotubularin related protein 6
hg19_v2_chr6_-_34073743_34073761	0.0155058	GLI3	ENST00000609222.1|GRM4|ENSG00000124493.9|glutamate receptor, metabotropic 4
hg19_v2_chr7_+_156931889_156931970	0.0154478	GLI3	ENST00000389103.4|UBE3C|ENSG00000009335.13|ubiquitin protein ligase E3C
hg19_v2_chr1_-_177133998_177134018	0.0154103	GLI3	ENST00000367657.3|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr5_-_154230130_154230210	0.015389	GLI3	ENST00000519501.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000518651.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000517938.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000520461.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2
hg19_v2_chr22_+_20193905_20193930	0.0153726	GLI3	ENST00000609602.1|LINC00896|ENSG00000236499.2|long intergenic non-protein coding RNA 896
hg19_v2_chr9_-_139371533_139371567	0.0151703	GLI3	ENST00000290037.6|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000431893.2|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae) 	ENST00000371706.3|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr4_-_74847800_74847841	0.0151307	GLI3	ENST00000296029.3|PF4|ENSG00000163737.3|platelet factor 4
hg19_v2_chr17_+_79981144_79981202	0.0151177	GLI3	ENST00000306688.3|LRRC45|ENSG00000169683.3|leucine rich repeat containing 45
hg19_v2_chr1_-_243418621_243418648	0.0150937	GLI3	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr1_-_45253377_45253377	0.0149765	GLI3	ENST00000372207.3|BEST4|ENSG00000142959.4|bestrophin 4
hg19_v2_chr22_-_23922448_23922495	0.0147814	GLI3	ENST00000438703.1|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1 	ENST00000330377.2|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr6_-_159421198_159421254	0.0147721	GLI3	ENST00000252655.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000297262.3|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000367069.2|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr9_+_127213423_127213423	0.0147642	GLI3	ENST00000334810.1|GPR144|ENSG00000180264.6|G protein-coupled receptor 144
hg19_v2_chr8_-_94928861_94928910	0.0146321	GLI3	ENST00000607097.1|MIR378D2|ENSG00000264448.2|microRNA 378d-2
hg19_v2_chr5_+_65892174_65892229	0.0144945	GLI3	ENST00000404260.3|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000403625.2|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4 	ENST00000406374.1|MAST4|ENSG00000069020.14|microtubule associated serine/threonine kinase family member 4
hg19_v2_chr7_+_48211048_48211063	0.0143565	GLI3	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr1_-_13840483_13840543	0.0143194	GLI3	ENST00000376085.3|LRRC38|ENSG00000162494.5|leucine rich repeat containing 38
hg19_v2_chr3_+_128598433_128598511	0.0143194	GLI3	ENST00000308982.7|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9 	ENST00000514336.1|ACAD9|ENSG00000177646.13|acyl-CoA dehydrogenase family, member 9
hg19_v2_chr7_+_1022811_1022835	0.0142703	GLI3	ENST00000308919.7|CYP2W1|ENSG00000073067.9|cytochrome P450, family 2, subfamily W, polypeptide 1
hg19_v2_chr19_+_51628165_51628165	0.0140519	GLI3	ENST00000250360.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9 	ENST00000440804.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9
hg19_v2_chr16_-_89043605_89043625	0.0140311	GLI3	ENST00000268679.4|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chrX_+_23685563_23685648	0.0139844	GLI3	ENST00000379341.4|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr1_+_104197912_104197912	0.0138371	GLI3	ENST00000430659.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr17_-_19062424_19062424	0.0137933	GLI3	ENST00000399083.1|AC007952.6|ENSG00000197665.5|Uncharacterized protein
hg19_v2_chr17_-_6554747_6554802	0.0137692	GLI3	ENST00000574128.1|MED31|ENSG00000108590.6|mediator complex subunit 31
hg19_v2_chr7_-_105162652_105162709	0.0137668	GLI3	ENST00000356362.2|PUS7|ENSG00000091127.9|pseudouridylate synthase 7 homolog (S. cerevisiae) 	ENST00000469408.1|PUS7|ENSG00000091127.9|pseudouridylate synthase 7 homolog (S. cerevisiae)
hg19_v2_chr12_-_57030115_57030177	0.0137052	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr11_-_64085533_64085558	0.0136201	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr7_+_150688166_150688192	0.0135117	GLI3	ENST00000461406.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr22_-_25170444_25170444	0.0133626	GLI3	ENST00000533313.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3 	ENST00000527701.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr6_-_116601044_116601106	0.0131932	GLI3	ENST00000368608.3|TSPYL1|ENSG00000189241.6|TSPY-like 1
hg19_v2_chr7_+_87563458_87563489	0.0130693	GLI3	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr14_-_106068065_106068065	0.0129464	GLI3	ENST00000390541.2|IGHE|ENSG00000211891.4|immunoglobulin heavy constant epsilon
hg19_v2_chrX_+_135618258_135618354	0.0127723	GLI3	ENST00000440515.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila) 	ENST00000456412.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chr7_+_56131917_56132014	0.01275	GLI3	ENST00000434526.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000275607.9|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000395435.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000413952.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000342190.6|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000437307.2|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000413756.1|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2 	ENST00000451338.1|SUMF2|ENSG00000129103.13|sulfatase modifying factor 2
hg19_v2_chr12_-_6798410_6798503	0.0127262	GLI3	ENST00000361959.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000436774.2|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000544482.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr1_+_43735678_43735696	0.01255	GLI3	ENST00000432792.2|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr9_+_87285539_87285575	0.0125098	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr10_-_35104185_35104267	0.0124375	GLI3	ENST00000374789.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374788.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000346874.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374794.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000350537.4|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374790.3|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374776.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000374773.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545693.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000545260.1|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator 	ENST00000340077.5|PARD3|ENSG00000148498.11|par-3 family cell polarity regulator
hg19_v2_chr12_-_9102224_9102331	0.0122632	GLI3	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chrX_+_135229559_135229576	0.0121057	GLI3	ENST00000394155.2|FHL1|ENSG00000022267.12|four and a half LIM domains 1
hg19_v2_chr5_-_850676_850720	0.0120883	GLI3	ENST00000424784.2|ZDHHC11|ENSG00000188818.8|zinc finger, DHHC-type containing 11
hg19_v2_chr19_-_46318561_46318577	0.0119547	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr8_+_11141925_11141937	0.0119419	GLI3	ENST00000221086.3|MTMR9|ENSG00000104643.5|myotubularin related protein 9
hg19_v2_chr9_+_21440440_21440440	0.0118958	GLI3	ENST00000276927.1|IFNA1|ENSG00000197919.3|interferon, alpha 1
hg19_v2_chr19_-_48389651_48389656	0.0118562	GLI3	ENST00000222002.3|SULT2A1|ENSG00000105398.3|sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1
hg19_v2_chr5_+_140566_140681	0.0118115	GLI3	ENST00000502646.1|PLEKHG4B|ENSG00000153404.9|pleckstrin homology domain containing, family G (with RhoGef domain) member 4B
hg19_v2_chrX_+_107334895_107334934	0.0117193	GLI3	ENST00000372232.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000345734.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000372254.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase
hg19_v2_chr13_+_46039037_46039126	0.0116107	GLI3	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr14_-_21566731_21566836	0.0114036	GLI3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr11_-_73309228_73309257	0.0113292	GLI3	ENST00000356467.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A 	ENST00000064778.4|FAM168A|ENSG00000054965.6|family with sequence similarity 168, member A
hg19_v2_chr11_+_44117741_44117798	0.0112994	GLI3	ENST00000395673.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2 	ENST00000343631.3|EXT2|ENSG00000151348.9|exostosin glycosyltransferase 2
hg19_v2_chr5_+_176513868_176513893	0.0111957	GLI3	ENST00000292408.4|FGFR4|ENSG00000160867.10|fibroblast growth factor receptor 4
hg19_v2_chr16_-_75299845_75299883	0.0111243	GLI3	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr5_+_23951673_23951673	0.0111046	GLI3	ENST00000507936.1|C5orf17|ENSG00000248874.1|chromosome 5 open reading frame 17
hg19_v2_chr10_+_124134201_124134350	0.0110912	GLI3	ENST00000368990.3|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368988.1|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000368989.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENST00000463663.2|PLEKHA1|ENSG00000107679.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
hg19_v2_chr21_+_34697209_34697245	0.0110646	GLI3	ENST00000270139.3|IFNAR1|ENSG00000142166.8|interferon (alpha, beta and omega) receptor 1
hg19_v2_chr5_-_72861175_72861264	0.0110007	GLI3	ENST00000504641.1|ANKRA2|ENSG00000164331.5|ankyrin repeat, family A (RFXANK-like), 2
hg19_v2_chr20_-_58508702_58508728	0.0109892	GLI3	ENST00000357552.3|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2 	ENST00000425931.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr19_-_16284286_16284336	0.0108981	GLI3	ENST00000379859.3|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3 	ENST00000269878.4|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3
hg19_v2_chr16_+_88493879_88493879	0.0108722	GLI3	ENST00000565624.1|ZNF469|ENSG00000225614.2|zinc finger protein 469 	ENST00000437464.1|ZNF469|ENSG00000225614.2|zinc finger protein 469
hg19_v2_chr19_-_16653226_16653275	0.0108381	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr11_+_45868957_45869044	0.010834	GLI3	ENST00000443527.2|CRY2|ENSG00000121671.7|cryptochrome 2 (photolyase-like)
hg19_v2_chr2_+_131862900_131862926	0.0106643	GLI3	ENST00000438882.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000538982.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000404460.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr16_-_68269971_68270059	0.0103819	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr14_-_51561784_51561854	0.0102235	GLI3	ENST00000360392.4|TRIM9|ENSG00000100505.9|tripartite motif containing 9
hg19_v2_chr14_+_104689918_104689951	0.0100978	GLI3	ENST00000553757.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000556528.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000555282.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2
hg19_v2_chr13_-_113862401_113862428	0.00992946	GLI3	ENST00000375459.1|PCID2|ENSG00000126226.17|PCI domain containing 2
hg19_v2_chr18_-_44556449_44556449	0.00986813	GLI3	ENST00000330682.2|TCEB3C|ENSG00000183791.4|transcription elongation factor B polypeptide 3C (elongin A3)
hg19_v2_chr12_-_108714412_108714446	0.00981469	GLI3	ENST00000412676.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1 	ENST00000550573.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1
hg19_v2_chr4_+_15480828_15480868	0.00974412	GLI3	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr9_+_15552867_15552907	0.00960396	GLI3	ENST00000535968.1|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr6_-_33547975_33547999	0.00945621	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr17_+_39968926_39969042	0.0091672	GLI3	ENST00000585664.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000585922.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000429461.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr7_-_99764907_99764924	0.00905662	GLI3	ENST00000413800.1|GAL3ST4|ENSG00000197093.6|galactose-3-O-sulfotransferase 4
hg19_v2_chr16_+_20817746_20817755	0.00904546	GLI3	ENST00000568894.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr17_+_58677539_58677610	0.00892433	GLI3	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr19_+_44100727_44100804	0.00875929	GLI3	ENST00000528387.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000529930.1|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000336564.4|ZNF576|ENSG00000124444.11|zinc finger protein 576 	ENST00000607544.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5 	ENST00000526798.1|SRRM5|ENSG00000226763.3|serine/arginine repetitive matrix 5
hg19_v2_chr14_+_78870030_78870098	0.00858594	GLI3	ENST00000553631.1|NRXN3|ENSG00000021645.13|neurexin 3 	ENST00000554719.1|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr17_+_75315654_75315688	0.00854348	GLI3	ENST00000590595.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr8_-_142011036_142011127	0.00841391	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr9_+_131873659_131873714	0.00829654	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr11_-_35441597_35441613	0.00827653	GLI3	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr20_-_39946237_39946356	0.00824593	GLI3	ENST00000441102.2|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3 	ENST00000559234.1|ZHX3|ENSG00000174306.17|zinc fingers and homeoboxes 3
hg19_v2_chr1_-_95285652_95285719	0.008146	GLI3	ENST00000442418.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr17_-_36348610_36348666	0.00812072	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr1_+_108918421_108918421	0.00796768	GLI3	ENST00000444143.2|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6 	ENST00000294652.8|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6
hg19_v2_chr20_-_1165117_1165117	0.00794521	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr12_+_88429223_88429301	0.00782106	GLI3	ENST00000356891.3|C12orf29|ENSG00000133641.13|chromosome 12 open reading frame 29
hg19_v2_chr19_-_10613862_10614060	0.00775244	GLI3	ENST00000592055.1|KEAP1|ENSG00000079999.9|kelch-like ECH-associated protein 1
hg19_v2_chr1_+_234509413_234509447	0.00774912	GLI3	ENST00000366613.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) 	ENST00000366612.1|COA6|ENSG00000168275.10|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)
hg19_v2_chr19_-_41196458_41196490	0.00764835	GLI3	ENST00000598779.1|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr11_-_35441524_35441578	0.0076294	GLI3	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr11_-_62341445_62341499	0.00755381	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr10_+_106028923_106028956	0.00752127	GLI3	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr19_-_40896081_40896094	0.00735138	GLI3	ENST00000291823.2|HIPK4|ENSG00000160396.8|homeodomain interacting protein kinase 4
hg19_v2_chr1_+_170904612_170904677	0.00710883	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr7_+_1126461_1126512	0.00702545	GLI3	ENST00000297469.3|GPER1|ENSG00000164850.10|G protein-coupled estrogen receptor 1
hg19_v2_chr1_+_10490127_10490159	0.00700186	GLI3	ENST00000602787.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000602296.1|APITD1|ENSG00000175279.17|apoptosis-inducing, TAF9-like domain 1 	ENST00000400900.2|APITD1-CORT|ENSG00000251503.3|APITD1-CORT readthrough
hg19_v2_chr1_+_36690011_36690092	0.00699959	GLI3	ENST00000354618.5|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000469141.2|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000478853.1|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3
hg19_v2_chr16_-_67840442_67840555	0.00694621	GLI3	ENST00000536251.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000448631.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000602677.1|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000411657.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000425512.2|RANBP10|ENSG00000141084.6|RAN binding protein 10 	ENST00000317506.3|RANBP10|ENSG00000141084.6|RAN binding protein 10
hg19_v2_chr22_+_39436862_39436924	0.00678991	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chr4_+_76932375_76932402	0.0067792	GLI3	ENST00000513122.1|ART3|ENSG00000156219.12|ADP-ribosyltransferase 3
hg19_v2_chr6_-_35480705_35480718	0.00669139	GLI3	ENST00000229771.6|TULP1|ENSG00000112041.8|tubby like protein 1
hg19_v2_chr16_+_28875268_28875317	0.00668324	GLI3	ENST00000395532.4|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr20_-_33880204_33880234	0.00665135	GLI3	ENST00000374408.3|FAM83C|ENSG00000125998.7|family with sequence similarity 83, member C
hg19_v2_chr6_+_43457317_43457360	0.00660688	GLI3	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr10_+_102729249_102729308	0.00660045	GLI3	ENST00000519649.1|SEMA4G|ENSG00000095539.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G 	ENST00000518124.1|SEMA4G|ENSG00000095539.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
hg19_v2_chr10_-_7661623_7661637	0.00659894	GLI3	ENST00000298441.6|ITIH5|ENSG00000123243.10|inter-alpha-trypsin inhibitor heavy chain family, member 5
hg19_v2_chr1_-_230991747_230991782	0.00647019	GLI3	ENST00000523410.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr22_-_22901636_22901747	0.00631718	GLI3	ENST00000406503.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000439106.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000402697.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000543184.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000398743.2|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma
hg19_v2_chr18_-_44550534_44550534	0.00631696	GLI3	ENST00000451265.1|TCEB3CL|ENSG00000234298.1|transcription elongation factor B polypeptide 3C-like
hg19_v2_chr12_-_96429423_96429439	0.00617034	GLI3	ENST00000228740.2|LTA4H|ENSG00000111144.5|leukotriene A4 hydrolase
hg19_v2_chr12_-_57522813_57522883	0.0060362	GLI3	ENST00000556155.1|STAT6|ENSG00000166888.6|signal transducer and activator of transcription 6, interleukin-4 induced
hg19_v2_chr4_+_72052964_72053013	0.00600571	GLI3	ENST00000264485.5|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000425175.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr1_-_26372602_26372624	0.00597136	GLI3	ENST00000374278.3|SLC30A2|ENSG00000158014.10|solute carrier family 30 (zinc transporter), member 2 	ENST00000374276.3|SLC30A2|ENSG00000158014.10|solute carrier family 30 (zinc transporter), member 2
hg19_v2_chr16_-_4466622_4466665	0.00596568	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr6_-_29600559_29600690	0.00590343	GLI3	ENST00000476670.1|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr19_-_58238958_58239000	0.00574273	GLI3	ENST00000596939.1|ZNF671|ENSG00000083814.8|zinc finger protein 671 	ENST00000335820.3|ZNF671|ENSG00000083814.8|zinc finger protein 671 	ENST00000317398.6|ZNF671|ENSG00000083814.8|zinc finger protein 671
hg19_v2_chr5_+_9546376_9546467	0.00550917	GLI3	ENST00000509788.1|SNHG18|ENSG00000250786.1|small nucleolar RNA host gene 18 (non-protein coding)
hg19_v2_chr20_+_36149602_36149665	0.00546376	GLI3	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chr4_+_9212383_9212383	0.00540678	GLI3	ENST00000421288.2|USP17L13|ENSG00000232399.2|ubiquitin specific peptidase 17-like family member 13 	ENST00000417945.1|USP17L10|ENSG00000231396.1|ubiquitin specific peptidase 17-like family member 10
hg19_v2_chr16_+_28834303_28834467	0.00529657	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chrX_-_100914781_100914876	0.00522426	GLI3	ENST00000431597.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000458024.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000413506.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000440675.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000328766.5|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000356824.4|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2
hg19_v2_chr2_-_27545431_27545444	0.00521118	GLI3	ENST00000233545.2|MPV17|ENSG00000115204.10|MpV17 mitochondrial inner membrane protein
hg19_v2_chr9_-_117160738_117160783	0.00502167	GLI3	ENST00000448674.1|RP11-9M16.2|ENSG00000235119.1|RP11-9M16.2
hg19_v2_chr12_+_125549925_125549956	0.00473307	GLI3	ENST00000316519.6|AACS|ENSG00000081760.12|acetoacetyl-CoA synthetase
hg19_v2_chr15_-_65810042_65810058	0.00467264	GLI3	ENST00000321147.6|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr22_+_45559722_45559881	0.00456358	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr15_-_31453359_31453476	0.00454074	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr1_-_104239302_104239302	0.00440529	GLI3	ENST00000446703.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr1_+_183774285_183774294	0.00438811	GLI3	ENST00000539189.1|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr9_+_131218698_131218750	0.00426278	GLI3	ENST00000434106.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000546203.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000446274.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000421776.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000432065.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr3_-_10052763_10052816	0.00414973	GLI3	ENST00000383808.2|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000426698.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000470827.2|EMC3|ENSG00000125037.8|ER membrane protein complex subunit 3
hg19_v2_chr19_-_42758040_42758064	0.00412159	GLI3	ENST00000593944.1|ERF|ENSG00000105722.5|Ets2 repressor factor
hg19_v2_chr19_-_44285401_44285446	0.00410386	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr19_-_49250054_49250166	0.00400355	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr9_+_99449322_99449347	0.00391597	GLI3	ENST00000423924.1|RP11-535M15.1|ENSG00000224848.1|RP11-535M15.1
hg19_v2_chr17_+_66509019_66509074	0.00389905	GLI3	ENST00000585981.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha 	ENST00000589480.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha 	ENST00000585815.1|PRKAR1A|ENSG00000108946.10|protein kinase, cAMP-dependent, regulatory, type I, alpha
hg19_v2_chr4_-_48908822_48908845	0.00378694	GLI3	ENST00000508632.1|OCIAD2|ENSG00000145247.7|OCIA domain containing 2
hg19_v2_chr16_+_55522536_55522599	0.00354931	GLI3	ENST00000570283.1|MMP2|ENSG00000087245.8|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
hg19_v2_chr8_-_86290333_86290348	0.00354926	GLI3	ENST00000521846.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523022.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000524324.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519991.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000520663.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517590.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522579.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522814.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522662.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523858.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519129.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr7_-_45026159_45026188	0.00352331	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr9_+_139247484_139247509	0.00334078	GLI3	ENST00000429455.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr20_+_49411543_49411635	0.00333814	GLI3	ENST00000609336.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4 	ENST00000445038.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4
hg19_v2_chr15_+_75487984_75488019	0.00321672	GLI3	ENST00000563905.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr19_+_8943074_8943074	0.00320285	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr17_-_3867585_3867748	0.00293788	GLI3	ENST00000359983.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000352011.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397043.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397041.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397035.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397039.1|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000309890.7|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous
hg19_v2_chr4_-_111119804_111119832	0.00253392	GLI3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr7_+_100187196_100187252	0.00242767	GLI3	ENST00000468962.1|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000427939.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr14_-_105708942_105709071	0.00230367	GLI3	ENST00000549655.1|BRF1|ENSG00000185024.11|BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
hg19_v2_chr10_+_6130966_6131047	0.00229767	GLI3	ENST00000437845.2|RBM17|ENSG00000134453.11|RNA binding motif protein 17 	ENST00000432931.1|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr12_+_130646999_130647019	0.00228891	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr7_+_73624276_73624311	0.00211145	GLI3	ENST00000475494.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2 	ENST00000398475.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2
hg19_v2_chr1_-_35450897_35450954	0.00201367	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr4_+_3388057_3388075	0.00200837	GLI3	ENST00000538395.1|RGS12|ENSG00000159788.14|regulator of G-protein signaling 12
hg19_v2_chr11_+_46403194_46403242	0.001967	GLI3	ENST00000395569.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395566.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr6_-_33756867_33756950	0.0018141	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chr3_+_15468862_15468909	0.00173043	GLI3	ENST00000396842.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr19_-_39226045_39226071	0.00165557	GLI3	ENST00000597987.1|CAPN12|ENSG00000182472.4|calpain 12 	ENST00000595177.1|CAPN12|ENSG00000182472.4|calpain 12
hg19_v2_chr1_+_167691191_167691389	0.00162689	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr3_-_135915146_135915194	0.00161533	GLI3	ENST00000473093.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chrX_+_153770421_153770478	0.00148516	GLI3	ENST00000369609.5|IKBKG|ENSG00000073009.8|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma 	ENST00000369607.1|IKBKG|ENSG00000073009.8|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma
hg19_v2_chr19_-_46318486_46318531	0.00104252	GLI3	ENST00000597055.1|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr3_-_122712079_122712120	0.000938118	GLI3	ENST00000393583.2|SEMA5B|ENSG00000082684.10|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
hg19_v2_chr15_-_76005170_76005197	0.00091522	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg19_v2_chr3_-_38991853_38991853	0.000825516	GLI3	ENST00000456224.3|SCN11A|ENSG00000168356.7|sodium channel, voltage-gated, type XI, alpha subunit
hg19_v2_chr11_-_13484713_13484850	0.0008185	GLI3	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr19_-_54746600_54746649	0.000773498	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr7_-_33842742_33842787	0.000699025	GLI3	ENST00000420185.1|RP11-89N17.4|ENSG00000236494.1|RP11-89N17.4	ENST00000440034.1|RP11-89N17.4|ENSG00000236494.1|RP11-89N17.4
hg19_v2_chr16_+_765092_765169	0.000512212	GLI3	ENST00000568223.2|METRN|ENSG00000103260.4|meteorin, glial cell differentiation regulator
hg19_v2_chr19_+_52873166_52873208	0.000462005	GLI3	ENST00000424032.2|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000600321.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000344085.5|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000597976.1|ZNF880|ENSG00000221923.4|zinc finger protein 880 	ENST00000422689.2|ZNF880|ENSG00000221923.4|zinc finger protein 880
hg19_v2_chr6_+_2988199_2988221	0.000451095	GLI3	ENST00000450238.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011 	ENST00000445000.1|LINC01011|ENSG00000244041.3|long intergenic non-protein coding RNA 1011 	ENST00000426637.1|NQO2|ENSG00000124588.15|NAD(P)H dehydrogenase, quinone 2
hg19_v2_chr1_+_247670415_247670426	0.000381475	GLI3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr7_-_105029812_105029860	0.000252229	GLI3	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr22_+_20905269_20905278	7.02863e-05	GLI3	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr12_-_56122220_56122266	6.50362e-05	GLI3	ENST00000552692.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr15_-_43877062_43877090	2.26256e-05	GLI3	ENST00000381885.1|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1 	ENST00000396923.3|PPIP5K1|ENSG00000168781.17|diphosphoinositol pentakisphosphate kinase 1
