hg19_v2_chrX_-_106959631_106959775	0.197589	GAGAUGA	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr3_-_122102065_122102101	0.127862	GAGAUGA	ENST00000479899.1|CCDC58|ENSG00000160124.5|coiled-coil domain containing 58 	ENST00000291458.5|CCDC58|ENSG00000160124.5|coiled-coil domain containing 58 	ENST00000497726.1|CCDC58|ENSG00000160124.5|coiled-coil domain containing 58
hg19_v2_chr13_+_48807288_48807302	0.121009	GAGAUGA	ENST00000378565.5|ITM2B|ENSG00000136156.8|integral membrane protein 2B
hg19_v2_chr18_+_9136758_9136852	0.112269	GAGAUGA	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr17_+_55333876_55333939	0.100261	GAGAUGA	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr6_-_99963252_99963264	0.0952609	GAGAUGA	ENST00000392738.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000327681.6|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45 	ENST00000472914.2|USP45|ENSG00000123552.13|ubiquitin specific peptidase 45
hg19_v2_chr16_-_79634595_79634620	0.0879291	GAGAUGA	ENST00000326043.4|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 	ENST00000393350.1|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
hg19_v2_chr13_+_41363581_41363633	0.0788383	GAGAUGA	ENST00000338625.4|SLC25A15|ENSG00000102743.10|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
hg19_v2_chr15_-_49338748_49338765	0.0708022	GAGAUGA	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr22_+_40390930_40390994	0.0706859	GAGAUGA	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr12_+_50898881_50898907	0.0668555	GAGAUGA	ENST00000301180.5|DIP2B|ENSG00000066084.8|DIP2 disco-interacting protein 2 homolog B (Drosophila)
hg19_v2_chr1_+_87794150_87794172	0.0662061	GAGAUGA	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr14_+_105992906_105992946	0.0648382	GAGAUGA	ENST00000392519.2|TMEM121|ENSG00000184986.6|transmembrane protein 121
hg19_v2_chr5_-_142065612_142065638	0.0540723	GAGAUGA	ENST00000360966.5|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic) 	ENST00000411960.1|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic)
hg19_v2_chr6_+_76458909_76458934	0.0537642	GAGAUGA	ENST00000369981.3|MYO6|ENSG00000196586.9|myosin VI 	ENST00000369985.4|MYO6|ENSG00000196586.9|myosin VI
hg19_v2_chr1_-_211752073_211752084	0.0527917	GAGAUGA	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chr15_-_44486632_44486664	0.0517446	GAGAUGA	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr2_+_173292301_173292332	0.0508256	GAGAUGA	ENST00000264106.6|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000375221.2|ITGA6|ENSG00000091409.10|integrin, alpha 6 	ENST00000343713.4|ITGA6|ENSG00000091409.10|integrin, alpha 6
hg19_v2_chr15_+_85923856_85923987	0.0488249	GAGAUGA	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr17_+_28705921_28706000	0.0487894	GAGAUGA	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr6_-_46138676_46138726	0.048588	GAGAUGA	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr10_+_111767720_111767752	0.0470807	GAGAUGA	ENST00000356080.4|ADD3|ENSG00000148700.9|adducin 3 (gamma) 	ENST00000277900.8|ADD3|ENSG00000148700.9|adducin 3 (gamma)
hg19_v2_chr12_-_65146636_65146651	0.0468373	GAGAUGA	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr14_+_37667118_37667192	0.0453232	GAGAUGA	ENST00000556615.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000327441.7|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000536774.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1
hg19_v2_chr11_+_13690200_13690244	0.0449638	GAGAUGA	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr18_-_29522989_29523104	0.0446259	GAGAUGA	ENST00000582539.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000283351.4|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8 	ENST00000582513.1|TRAPPC8|ENSG00000153339.9|trafficking protein particle complex 8
hg19_v2_chr20_-_62284766_62284785	0.0439611	GAGAUGA	ENST00000370053.1|STMN3|ENSG00000197457.5|stathmin-like 3
hg19_v2_chr11_+_86748863_86748948	0.0431203	GAGAUGA	ENST00000340353.7|TMEM135|ENSG00000166575.12|transmembrane protein 135
hg19_v2_chrX_-_109561294_109561467	0.0400103	GAGAUGA	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr14_-_96830207_96830207	0.0398624	GAGAUGA	ENST00000359933.4|ATG2B|ENSG00000066739.7|autophagy related 2B
hg19_v2_chr4_+_184826418_184826522	0.0385374	GAGAUGA	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr12_-_42538657_42538720	0.0370768	GAGAUGA	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr6_-_132272504_132272519	0.035326	GAGAUGA	ENST00000367976.3|CTGF|ENSG00000118523.5|connective tissue growth factor
hg19_v2_chr3_+_72937182_72937270	0.0326204	GAGAUGA	ENST00000389617.4|GXYLT2|ENSG00000172986.8|glucoside xylosyltransferase 2
hg19_v2_chr9_-_123476719_123476810	0.0318917	GAGAUGA	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr15_-_100258029_100258029	0.0311807	GAGAUGA	ENST00000378904.2|DKFZP779J2370|ENSG00000214397.2|DKFZP779J2370
hg19_v2_chr3_-_37034702_37034795	0.0308214	GAGAUGA	ENST00000322716.5|EPM2AIP1|ENSG00000178567.5|EPM2A (laforin) interacting protein 1
hg19_v2_chr2_+_26568965_26569025	0.030268	GAGAUGA	ENST00000260585.7|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) 	ENST00000447170.1|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
hg19_v2_chr11_-_118047376_118047388	0.0292278	GAGAUGA	ENST00000278947.5|SCN2B|ENSG00000149575.5|sodium channel, voltage-gated, type II, beta subunit
hg19_v2_chr4_+_44680429_44680498	0.0291866	GAGAUGA	ENST00000281543.5|GUF1|ENSG00000151806.9|GUF1 GTPase homolog (S. cerevisiae)
hg19_v2_chr11_+_113930291_113930339	0.0281244	GAGAUGA	ENST00000335953.4|ZBTB16|ENSG00000109906.9|zinc finger and BTB domain containing 16
hg19_v2_chr13_-_33002151_33002273	0.0274194	GAGAUGA	ENST00000495479.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000343281.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000464470.1|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380139.4|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1 	ENST00000380133.2|N4BP2L1|ENSG00000139597.12|NEDD4 binding protein 2-like 1
hg19_v2_chr11_-_79151695_79151710	0.0251008	GAGAUGA	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr1_-_57045228_57045242	0.0244943	GAGAUGA	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr9_+_79074068_79074150	0.0241651	GAGAUGA	ENST00000444201.2|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2 	ENST00000376730.4|GCNT1|ENSG00000187210.8|glucosaminyl (N-acetyl) transferase 1, core 2
hg19_v2_chr9_-_74525658_74525658	0.0240327	GAGAUGA	ENST00000333421.6|ABHD17B|ENSG00000107362.9|abhydrolase domain containing 17B
hg19_v2_chr11_-_130184555_130184581	0.0238096	GAGAUGA	ENST00000525842.1|ZBTB44|ENSG00000196323.7|zinc finger and BTB domain containing 44
hg19_v2_chr5_+_141488070_141488094	0.0236192	GAGAUGA	ENST00000253814.4|NDFIP1|ENSG00000131507.9|Nedd4 family interacting protein 1
hg19_v2_chr5_+_142149955_142150000	0.0234909	GAGAUGA	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr1_+_145611010_145611046	0.0231185	GAGAUGA	ENST00000369291.5|RNF115|ENSG00000121848.9|ring finger protein 115
hg19_v2_chr17_-_28618948_28619023	0.0223958	GAGAUGA	ENST00000261714.6|BLMH|ENSG00000108578.10|bleomycin hydrolase
hg19_v2_chr12_-_25403737_25403881	0.0222333	GAGAUGA	ENST00000256078.4|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000556131.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000311936.3|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000557334.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog
hg19_v2_chr10_+_70320413_70320413	0.0219287	GAGAUGA	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr1_+_51701924_51702001	0.0215358	GAGAUGA	ENST00000242719.3|RNF11|ENSG00000123091.4|ring finger protein 11
hg19_v2_chr2_+_97481974_97482015	0.0202283	GAGAUGA	ENST00000377060.3|CNNM3|ENSG00000168763.11|cyclin M3 	ENST00000305510.3|CNNM3|ENSG00000168763.11|cyclin M3
hg19_v2_chrX_-_48824793_48824793	0.0201052	GAGAUGA	ENST00000376477.1|KCND1|ENSG00000102057.5|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v2_chr8_-_18871159_18871201	0.0200942	GAGAUGA	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr12_+_12764773_12764852	0.0200107	GAGAUGA	ENST00000228865.2|CREBL2|ENSG00000111269.2|cAMP responsive element binding protein-like 2
hg19_v2_chr2_+_120517174_120517207	0.0199577	GAGAUGA	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr10_-_105615164_105615323	0.0199043	GAGAUGA	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr12_-_46766577_46766650	0.0197658	GAGAUGA	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr18_-_54305658_54305876	0.0197347	GAGAUGA	ENST00000586262.1|TXNL1|ENSG00000091164.8|thioredoxin-like 1 	ENST00000217515.6|TXNL1|ENSG00000091164.8|thioredoxin-like 1
hg19_v2_chr6_+_155054459_155054561	0.0196929	GAGAUGA	ENST00000367178.3|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000417268.1|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8 	ENST00000367186.4|SCAF8|ENSG00000213079.5|SR-related CTD-associated factor 8
hg19_v2_chrX_+_133507327_133507386	0.0192888	GAGAUGA	ENST00000332070.3|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000394292.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000370799.1|PHF6|ENSG00000156531.12|PHD finger protein 6 	ENST00000416404.2|PHF6|ENSG00000156531.12|PHD finger protein 6
hg19_v2_chr11_-_77532050_77532066	0.0192752	GAGAUGA	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr1_+_178062855_178062903	0.0192474	GAGAUGA	ENST00000448150.3|RASAL2|ENSG00000075391.12|RAS protein activator like 2
hg19_v2_chr1_+_160370344_160370406	0.0190801	GAGAUGA	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr1_-_115259337_115259515	0.01884	GAGAUGA	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr10_-_112064665_112064737	0.0187869	GAGAUGA	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr1_+_62208091_62208182	0.0181697	GAGAUGA	ENST00000316485.6|INADL|ENSG00000132849.14|InaD-like (Drosophila) 	ENST00000371158.2|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr12_+_69864129_69864222	0.0179274	GAGAUGA	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr15_+_44719394_44719579	0.0178615	GAGAUGA	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr4_+_128703295_128703496	0.0174591	GAGAUGA	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr2_+_233562015_233562062	0.0172984	GAGAUGA	ENST00000427233.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373566.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000373563.4|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000428883.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000456491.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409480.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000421433.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000425040.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000430720.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409547.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000423659.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409196.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000409451.3|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000429187.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2 	ENST00000440945.1|GIGYF2|ENSG00000204120.10|GRB10 interacting GYF protein 2
hg19_v2_chr6_+_114178512_114178586	0.0172458	GAGAUGA	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr10_+_65281123_65281183	0.0169997	GAGAUGA	ENST00000298249.4|REEP3|ENSG00000165476.8|receptor accessory protein 3 	ENST00000373758.4|REEP3|ENSG00000165476.8|receptor accessory protein 3
hg19_v2_chr13_+_45563721_45563755	0.0169825	GAGAUGA	ENST00000361121.2|GPALPP1|ENSG00000133114.13|GPALPP motifs containing 1
hg19_v2_chr2_-_164592497_164592573	0.0159702	GAGAUGA	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr2_+_187350883_187350962	0.0155296	GAGAUGA	ENST00000337859.6|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr8_+_102504651_102504683	0.0149173	GAGAUGA	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr19_+_37960240_37960299	0.0146527	GAGAUGA	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr8_-_38853990_38854061	0.0144257	GAGAUGA	ENST00000456845.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000397070.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000517872.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000412303.1|TM2D2|ENSG00000169490.12|TM2 domain containing 2 	ENST00000456397.2|TM2D2|ENSG00000169490.12|TM2 domain containing 2
hg19_v2_chr17_+_60704762_60704762	0.0142174	GAGAUGA	ENST00000303375.5|MRC2|ENSG00000011028.9|mannose receptor, C type 2
hg19_v2_chr17_+_38278530_38278605	0.0138873	GAGAUGA	ENST00000398532.4|MSL1|ENSG00000188895.7|male-specific lethal 1 homolog (Drosophila)
hg19_v2_chr13_+_95254085_95254171	0.0131213	GAGAUGA	ENST00000376958.4|GPR180|ENSG00000152749.7|G protein-coupled receptor 180
hg19_v2_chr14_+_77228532_77228672	0.0126901	GAGAUGA	ENST00000167106.4|VASH1|ENSG00000071246.6|vasohibin 1 	ENST00000554237.1|VASH1|ENSG00000071246.6|vasohibin 1
hg19_v2_chr17_-_46623441_46623441	0.0123927	GAGAUGA	ENST00000330070.4|HOXB2|ENSG00000173917.9|homeobox B2
hg19_v2_chr2_+_86947296_86947434	0.0123301	GAGAUGA	ENST00000283632.4|RMND5A|ENSG00000153561.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
hg19_v2_chr16_+_70148230_70148275	0.0122654	GAGAUGA	ENST00000398122.3|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit 	ENST00000568530.1|PDPR|ENSG00000090857.9|pyruvate dehydrogenase phosphatase regulatory subunit
hg19_v2_chrX_-_63425561_63425624	0.0120809	GAGAUGA	ENST00000374869.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1 	ENST00000330258.3|AMER1|ENSG00000184675.5|APC membrane recruitment protein 1
hg19_v2_chr3_+_36421826_36421844	0.0120604	GAGAUGA	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr16_+_67063036_67063088	0.0118029	GAGAUGA	ENST00000290858.6|CBFB|ENSG00000067955.9|core-binding factor, beta subunit 	ENST00000564034.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chr13_+_28813645_28813770	0.0117703	GAGAUGA	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr17_+_57784826_57784883	0.0117051	GAGAUGA	ENST00000262291.4|VMP1|ENSG00000062716.6|vacuole membrane protein 1
hg19_v2_chr2_-_73053126_73053184	0.011131	GAGAUGA	ENST00000272427.6|EXOC6B|ENSG00000144036.10|exocyst complex component 6B 	ENST00000410104.1|EXOC6B|ENSG00000144036.10|exocyst complex component 6B
hg19_v2_chr2_-_180129484_180129574	0.0110478	GAGAUGA	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr2_-_25873079_25873093	0.0109559	GAGAUGA	ENST00000496972.2|DTNB|ENSG00000138101.14|dystrobrevin, beta
hg19_v2_chrX_-_73834449_73834481	0.0103213	GAGAUGA	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr17_-_48278983_48278999	0.0102325	GAGAUGA	ENST00000225964.5|COL1A1|ENSG00000108821.9|collagen, type I, alpha 1
hg19_v2_chr8_-_82024290_82024310	0.0101827	GAGAUGA	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr17_+_38219063_38219154	0.0100434	GAGAUGA	ENST00000584985.1|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000264637.4|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000450525.2|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha
hg19_v2_chr2_+_172778952_172779004	0.00997679	GAGAUGA	ENST00000392584.1|HAT1|ENSG00000128708.8|histone acetyltransferase 1 	ENST00000264108.4|HAT1|ENSG00000128708.8|histone acetyltransferase 1
hg19_v2_chr10_+_88516396_88516426	0.00995154	GAGAUGA	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr1_-_33338076_33338105	0.00979188	GAGAUGA	ENST00000496770.1|FNDC5|ENSG00000160097.11|fibronectin type III domain containing 5
hg19_v2_chr5_+_32711419_32711540	0.00942885	GAGAUGA	ENST00000265074.8|NPR3|ENSG00000113389.11|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
hg19_v2_chr4_+_77870856_77870919	0.00935668	GAGAUGA	ENST00000264893.6|SEPT11|ENSG00000138758.7|septin 11 	ENST00000502584.1|SEPT11|ENSG00000138758.7|septin 11 	ENST00000510641.1|SEPT11|ENSG00000138758.7|septin 11
hg19_v2_chr17_+_56160768_56160786	0.00919299	GAGAUGA	ENST00000579991.2|DYNLL2|ENSG00000264364.2|dynein, light chain, LC8-type 2
hg19_v2_chr20_-_40247133_40247194	0.00904597	GAGAUGA	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr1_+_110527308_110527349	0.00890056	GAGAUGA	ENST00000369799.5|AHCYL1|ENSG00000168710.13|adenosylhomocysteinase-like 1
hg19_v2_chr2_-_10952922_10952970	0.00878201	GAGAUGA	ENST00000272227.3|PDIA6|ENSG00000143870.8|protein disulfide isomerase family A, member 6
hg19_v2_chr16_-_23521710_23521826	0.00858714	GAGAUGA	ENST00000562117.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000567468.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000562944.1|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2 	ENST00000309859.4|GGA2|ENSG00000103365.11|golgi-associated, gamma adaptin ear containing, ARF binding protein 2
hg19_v2_chr1_-_41131326_41131400	0.00843401	GAGAUGA	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr3_+_113465866_113465925	0.00843034	GAGAUGA	ENST00000273398.3|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000538620.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000496747.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000475322.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
hg19_v2_chr4_-_79860506_79860600	0.00823536	GAGAUGA	ENST00000295462.3|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000380645.4|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000512733.1|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III
hg19_v2_chr3_-_52188397_52188450	0.00809284	GAGAUGA	ENST00000474012.1|POC1A|ENSG00000164087.3|POC1 centriolar protein A 	ENST00000296484.2|POC1A|ENSG00000164087.3|POC1 centriolar protein A
hg19_v2_chr5_+_54455946_54456019	0.00799623	GAGAUGA	ENST00000503787.1|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative) 	ENST00000296734.6|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative) 	ENST00000515370.1|GPX8|ENSG00000164294.9|glutathione peroxidase 8 (putative)
hg19_v2_chr11_+_118477144_118477156	0.00791753	GAGAUGA	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr15_-_68724490_68724516	0.00764129	GAGAUGA	ENST00000315757.7|ITGA11|ENSG00000137809.12|integrin, alpha 11 	ENST00000423218.2|ITGA11|ENSG00000137809.12|integrin, alpha 11
hg19_v2_chr1_+_89990431_89990493	0.00759617	GAGAUGA	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr14_-_31676964_31677017	0.00731044	GAGAUGA	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr6_-_33282163_33282211	0.00722953	GAGAUGA	ENST00000434618.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin) 	ENST00000456592.2|TAPBP|ENSG00000231925.7|TAP binding protein (tapasin)
hg19_v2_chr19_-_10121144_10121155	0.00713677	GAGAUGA	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr9_+_90112741_90112761	0.00704255	GAGAUGA	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr4_-_53525406_53525502	0.00701686	GAGAUGA	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr2_-_217560248_217560278	0.0070143	GAGAUGA	ENST00000233813.4|IGFBP5|ENSG00000115461.4|insulin-like growth factor binding protein 5
hg19_v2_chr2_-_85839146_85839198	0.00698294	GAGAUGA	ENST00000306336.5|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68 	ENST00000409734.3|C2orf68|ENSG00000168887.6|chromosome 2 open reading frame 68
hg19_v2_chr3_+_49236910_49236944	0.00681494	GAGAUGA	ENST00000452691.2|CCDC36|ENSG00000173421.12|coiled-coil domain containing 36 	ENST00000366429.2|CCDC36|ENSG00000173421.12|coiled-coil domain containing 36
hg19_v2_chr7_+_142985308_142985453	0.00660509	GAGAUGA	ENST00000310447.5|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr11_+_57520715_57520776	0.00643714	GAGAUGA	ENST00000524630.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000529919.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000399039.4|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1 	ENST00000533189.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr2_-_9143786_9143942	0.00611115	GAGAUGA	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr10_-_89623194_89623194	0.00607355	GAGAUGA	ENST00000445946.3|KLLN|ENSG00000227268.3|killin, p53-regulated DNA replication inhibitor
hg19_v2_chr2_-_69870835_69870853	0.0060078	GAGAUGA	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr12_+_56473628_56473680	0.00565492	GAGAUGA	ENST00000549282.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000549061.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000267101.3|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr20_+_30865429_30865480	0.00561756	GAGAUGA	ENST00000375712.3|KIF3B|ENSG00000101350.6|kinesin family member 3B
hg19_v2_chr5_-_154317740_154317787	0.00554626	GAGAUGA	ENST00000285873.7|GEMIN5|ENSG00000082516.8|gem (nuclear organelle) associated protein 5
hg19_v2_chr11_-_118661828_118661886	0.00534652	GAGAUGA	ENST00000264018.4|DDX6|ENSG00000110367.7|DEAD (Asp-Glu-Ala-Asp) box helicase 6
hg19_v2_chr2_-_118771701_118771727	0.00517729	GAGAUGA	ENST00000376300.2|CCDC93|ENSG00000125633.6|coiled-coil domain containing 93 	ENST00000319432.5|CCDC93|ENSG00000125633.6|coiled-coil domain containing 93
hg19_v2_chr11_+_94501497_94501577	0.00508465	GAGAUGA	ENST00000317829.8|AMOTL1|ENSG00000166025.13|angiomotin like 1 	ENST00000317837.9|AMOTL1|ENSG00000166025.13|angiomotin like 1 	ENST00000433060.2|AMOTL1|ENSG00000166025.13|angiomotin like 1
hg19_v2_chr10_+_76871454_76871467	0.00493894	GAGAUGA	ENST00000372687.4|SAMD8|ENSG00000156671.8|sterile alpha motif domain containing 8
hg19_v2_chr3_-_125094093_125094198	0.00465473	GAGAUGA	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr12_+_60083118_60083157	0.00462612	GAGAUGA	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr4_+_99916765_99916776	0.00415048	GAGAUGA	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr17_-_61920280_61920425	0.00411667	GAGAUGA	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr14_-_31495569_31495636	0.00399752	GAGAUGA	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr19_-_38806560_38806607	0.00399077	GAGAUGA	ENST00000591755.1|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000337679.8|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae) 	ENST00000339413.6|YIF1B|ENSG00000167645.12|Yip1 interacting factor homolog B (S. cerevisiae)
hg19_v2_chrX_+_9983602_9983602	0.00399012	GAGAUGA	ENST00000380861.4|WWC3|ENSG00000047644.13|WWC family member 3
hg19_v2_chr2_-_96931679_96931756	0.00390315	GAGAUGA	ENST00000258439.3|TMEM127|ENSG00000135956.4|transmembrane protein 127 	ENST00000432959.1|TMEM127|ENSG00000135956.4|transmembrane protein 127
hg19_v2_chr12_-_31479045_31479074	0.00365947	GAGAUGA	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr19_-_47128294_47128375	0.00360593	GAGAUGA	ENST00000596260.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000597185.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000598865.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000594275.1|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP) 	ENST00000291294.2|PTGIR|ENSG00000160013.4|prostaglandin I2 (prostacyclin) receptor (IP)
hg19_v2_chr1_+_110577229_110577258	0.00331573	GAGAUGA	ENST00000369795.3|STRIP1|ENSG00000143093.10|striatin interacting protein 1 	ENST00000369794.2|STRIP1|ENSG00000143093.10|striatin interacting protein 1
hg19_v2_chr1_-_155532484_155532605	0.00325822	GAGAUGA	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr8_-_116681221_116681236	0.00314279	GAGAUGA	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr5_+_141303373_141303421	0.00309054	GAGAUGA	ENST00000432126.2|KIAA0141|ENSG00000081791.4|KIAA0141 	ENST00000194118.4|KIAA0141|ENSG00000081791.4|KIAA0141
hg19_v2_chr5_+_145583156_145583180	0.00295765	GAGAUGA	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr3_+_97483366_97483422	0.00287364	GAGAUGA	ENST00000463745.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6 	ENST00000462412.1|ARL6|ENSG00000113966.5|ADP-ribosylation factor-like 6
hg19_v2_chr1_+_39456895_39456986	0.00284583	GAGAUGA	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr19_-_46234119_46234189	0.00260252	GAGAUGA	ENST00000317683.3|FBXO46|ENSG00000177051.5|F-box protein 46
hg19_v2_chr9_-_20622478_20622542	0.00248264	GAGAUGA	ENST00000355930.6|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENST00000380338.4|MLLT3|ENSG00000171843.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
hg19_v2_chr11_-_9336234_9336327	0.00238725	GAGAUGA	ENST00000528080.1|TMEM41B|ENSG00000166471.6|transmembrane protein 41B
hg19_v2_chr6_-_52441713_52441784	0.00192478	GAGAUGA	ENST00000182527.3|TRAM2|ENSG00000065308.4|translocation associated membrane protein 2
hg19_v2_chr3_+_183873098_183873230	0.00184906	GAGAUGA	ENST00000313143.3|DVL3|ENSG00000161202.13|dishevelled segment polarity protein 3
hg19_v2_chr22_-_22221900_22221970	0.00160221	GAGAUGA	ENST00000215832.6|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1 	ENST00000398822.3|MAPK1|ENSG00000100030.10|mitogen-activated protein kinase 1
hg19_v2_chr20_-_50159198_50159299	0.00126207	GAGAUGA	ENST00000371564.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000396009.3|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 	ENST00000610033.1|NFATC2|ENSG00000101096.15|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
hg19_v2_chr15_+_77287426_77287487	0.0011776	GAGAUGA	ENST00000558012.1|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000267939.5|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1 	ENST00000379595.3|PSTPIP1|ENSG00000140368.8|proline-serine-threonine phosphatase interacting protein 1
hg19_v2_chr5_-_38595498_38595514	0.00105573	GAGAUGA	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr6_+_43265992_43266003	0.000911324	GAGAUGA	ENST00000449231.1|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372589.3|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7 	ENST00000372585.5|SLC22A7|ENSG00000137204.10|solute carrier family 22 (organic anion transporter), member 7
hg19_v2_chrX_+_152599604_152599626	0.000507536	GAGAUGA	ENST00000370251.3|ZNF275|ENSG00000063587.12|zinc finger protein 275 	ENST00000421401.3|ZNF275|ENSG00000063587.12|zinc finger protein 275
hg19_v2_chr2_-_206950781_206950947	6.57714e-06	GAGAUGA	ENST00000403263.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
