hg19_v2_chr17_+_74536115_74536138	0.00555531	CCUUGGC	ENST00000592014.1|PRCD|ENSG00000214140.6|progressive rod-cone degeneration
hg19_v2_chr2_-_201936302_201936416	0.00452007	CCUUGGC	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr1_-_89591749_89591816	0.00432612	CCUUGGC	ENST00000370466.3|GBP2|ENSG00000162645.8|guanylate binding protein 2, interferon-inducible
hg19_v2_chr8_+_144451039_144451057	0.00429569	CCUUGGC	ENST00000289013.6|RHPN1|ENSG00000158106.8|rhophilin, Rho GTPase binding protein 1
hg19_v2_chr17_+_47572647_47572662	0.0042269	CCUUGGC	ENST00000172229.3|NGFR|ENSG00000064300.4|nerve growth factor receptor
hg19_v2_chr5_+_139927213_139927271	0.004183	CCUUGGC	ENST00000310331.2|EIF4EBP3|ENSG00000243056.1|eukaryotic translation initiation factor 4E binding protein 3
hg19_v2_chr2_+_241375069_241375136	0.00361072	CCUUGGC	ENST00000264039.2|GPC1|ENSG00000063660.4|glypican 1
hg19_v2_chr12_-_26278030_26278060	0.00334363	CCUUGGC	ENST00000242728.4|BHLHE41|ENSG00000123095.5|basic helix-loop-helix family, member e41
hg19_v2_chr1_+_26517052_26517052	0.00324771	CCUUGGC	ENST00000338855.2|CATSPER4|ENSG00000188782.3|cation channel, sperm associated 4 	ENST00000456354.2|CATSPER4|ENSG00000188782.3|cation channel, sperm associated 4
hg19_v2_chr15_-_34628951_34629045	0.00317069	CCUUGGC	ENST00000397707.2|SLC12A6|ENSG00000140199.7|solute carrier family 12 (potassium/chloride transporter), member 6 	ENST00000560611.1|SLC12A6|ENSG00000140199.7|solute carrier family 12 (potassium/chloride transporter), member 6
hg19_v2_chr16_-_71610985_71611033	0.00293838	CCUUGGC	ENST00000355962.4|TAT|ENSG00000198650.6|tyrosine aminotransferase
hg19_v2_chr9_+_124413873_124413969	0.00272375	CCUUGGC	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr14_-_77495007_77495093	0.00269525	CCUUGGC	ENST00000238647.3|IRF2BPL|ENSG00000119669.3|interferon regulatory factor 2 binding protein-like
hg19_v2_chr7_-_74867509_74867634	0.00260509	CCUUGGC	ENST00000426327.3|GATSL2|ENSG00000198750.7|GATS protein-like 2
hg19_v2_chr9_-_16870704_16870841	0.00260267	CCUUGGC	ENST00000380672.4|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380667.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000380666.2|BNC2|ENSG00000173068.13|basonuclin 2 	ENST00000486514.1|BNC2|ENSG00000173068.13|basonuclin 2
hg19_v2_chr2_+_85981008_85981025	0.00227646	CCUUGGC	ENST00000306279.3|ATOH8|ENSG00000168874.8|atonal homolog 8 (Drosophila)
hg19_v2_chr3_-_53880401_53880474	0.00226431	CCUUGGC	ENST00000315251.6|CHDH|ENSG00000016391.6|choline dehydrogenase
hg19_v2_chr11_-_119599794_119599857	0.00214873	CCUUGGC	ENST00000264025.3|PVRL1|ENSG00000110400.6|poliovirus receptor-related 1 (herpesvirus entry mediator C)
hg19_v2_chr1_-_51763661_51763672	0.00214212	CCUUGGC	ENST00000530004.1|TTC39A|ENSG00000085831.11|tetratricopeptide repeat domain 39A
hg19_v2_chr16_-_75150665_75150699	0.00212958	CCUUGGC	ENST00000300051.4|LDHD|ENSG00000166816.9|lactate dehydrogenase D 	ENST00000450168.2|LDHD|ENSG00000166816.9|lactate dehydrogenase D
hg19_v2_chr10_-_103874692_103874715	0.00210266	CCUUGGC	ENST00000361198.5|LDB1|ENSG00000198728.6|LIM domain binding 1
hg19_v2_chr11_+_61447845_61447910	0.00202909	CCUUGGC	ENST00000257215.5|DAGLA|ENSG00000134780.5|diacylglycerol lipase, alpha
hg19_v2_chr17_-_41174424_41174447	0.00200345	CCUUGGC	ENST00000355653.3|VAT1|ENSG00000108828.11|vesicle amine transport 1
hg19_v2_chr2_+_168725458_168725458	0.00192478	CCUUGGC	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr18_+_13218769_13218792	0.00182464	CCUUGGC	ENST00000399848.3|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4 	ENST00000361205.4|LDLRAD4|ENSG00000168675.14|low density lipoprotein receptor class A domain containing 4
hg19_v2_chr3_-_114790179_114790222	0.00182193	CCUUGGC	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr1_+_151138500_151138518	0.00180482	CCUUGGC	ENST00000368905.4|SCNM1|ENSG00000163156.7|sodium channel modifier 1
hg19_v2_chrX_-_13956737_13956808	0.0017964	CCUUGGC	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chrX_+_77166172_77166261	0.00178819	CCUUGGC	ENST00000343533.5|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000350425.4|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000341514.6|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide
hg19_v2_chr2_-_27938593_27938615	0.00176795	CCUUGGC	ENST00000379677.2|AC074091.13|ENSG00000205334.2|Uncharacterized protein
hg19_v2_chr9_-_35665165_35665284	0.00171381	CCUUGGC	ENST00000343259.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39 	ENST00000378387.3|ARHGEF39|ENSG00000137135.13|Rho guanine nucleotide exchange factor (GEF) 39
hg19_v2_chr1_+_201979645_201979721	0.00168713	CCUUGGC	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr14_-_95786200_95786257	0.00168404	CCUUGGC	ENST00000298912.4|CLMN|ENSG00000165959.7|calmin (calponin-like, transmembrane)
hg19_v2_chr6_-_91006461_91006517	0.00167757	CCUUGGC	ENST00000257749.4|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000343122.3|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000406998.2|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2 	ENST00000453877.1|BACH2|ENSG00000112182.10|BTB and CNC homology 1, basic leucine zipper transcription factor 2
hg19_v2_chr4_-_146859623_146859669	0.00166062	CCUUGGC	ENST00000379448.4|ZNF827|ENSG00000151612.11|zinc finger protein 827 	ENST00000513320.1|ZNF827|ENSG00000151612.11|zinc finger protein 827
hg19_v2_chr1_+_16330723_16330738	0.00155836	CCUUGGC	ENST00000329454.2|C1orf64|ENSG00000183888.4|chromosome 1 open reading frame 64
hg19_v2_chr21_+_33245548_33245628	0.00154126	CCUUGGC	ENST00000270112.2|HUNK|ENSG00000142149.4|hormonally up-regulated Neu-associated kinase
hg19_v2_chr1_-_208417620_208417680	0.00152486	CCUUGGC	ENST00000367033.3|PLXNA2|ENSG00000076356.6|plexin A2
hg19_v2_chr2_-_220094294_220094439	0.00148689	CCUUGGC	ENST00000436856.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000428226.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000409422.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000431715.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000457841.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000439812.1|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000361242.4|ATG9A|ENSG00000198925.6|autophagy related 9A 	ENST00000396761.2|ATG9A|ENSG00000198925.6|autophagy related 9A
hg19_v2_chr2_-_208634287_208634439	0.00147761	CCUUGGC	ENST00000295417.3|FZD5|ENSG00000163251.3|frizzled family receptor 5
hg19_v2_chr19_+_48216600_48216685	0.00147688	CCUUGGC	ENST00000263277.3|EHD2|ENSG00000024422.7|EH-domain containing 2 	ENST00000538399.1|EHD2|ENSG00000024422.7|EH-domain containing 2
hg19_v2_chr12_-_6809958_6809996	0.00146806	CCUUGGC	ENST00000320591.5|PIANP|ENSG00000139200.9|PILR alpha associated neural protein 	ENST00000534837.1|PIANP|ENSG00000139200.9|PILR alpha associated neural protein
hg19_v2_chr3_+_183873098_183873230	0.00146554	CCUUGGC	ENST00000313143.3|DVL3|ENSG00000161202.13|dishevelled segment polarity protein 3
hg19_v2_chr19_+_42724423_42724529	0.00144396	CCUUGGC	ENST00000301215.3|ZNF526|ENSG00000167625.6|zinc finger protein 526 	ENST00000597945.1|ZNF526|ENSG00000167625.6|zinc finger protein 526
hg19_v2_chr13_-_36920420_36920574	0.00141385	CCUUGGC	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr1_-_19283163_19283180	0.00133856	CCUUGGC	ENST00000455833.2|IFFO2|ENSG00000169991.6|intermediate filament family orphan 2
hg19_v2_chr7_+_44788430_44788530	0.00133425	CCUUGGC	ENST00000457123.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2 	ENST00000309315.4|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr9_-_127533519_127533576	0.00133423	CCUUGGC	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr6_+_41514078_41514164	0.00131278	CCUUGGC	ENST00000373063.3|FOXP4|ENSG00000137166.10|forkhead box P4 	ENST00000373060.1|FOXP4|ENSG00000137166.10|forkhead box P4
hg19_v2_chr16_-_89007491_89007608	0.00127888	CCUUGGC	ENST00000327483.5|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3 	ENST00000564416.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr16_-_2264779_2264847	0.00127862	CCUUGGC	ENST00000333503.7|PGP|ENSG00000184207.8|phosphoglycolate phosphatase
hg19_v2_chr5_+_17217669_17217718	0.00123187	CCUUGGC	ENST00000322611.3|BASP1|ENSG00000176788.7|brain abundant, membrane attached signal protein 1
hg19_v2_chr20_+_33814457_33814506	0.00121892	CCUUGGC	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr14_+_53019822_53019873	0.00121019	CCUUGGC	ENST00000321662.6|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr11_+_7273181_7273223	0.00116117	CCUUGGC	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr22_+_50247449_50247515	0.00115721	CCUUGGC	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr3_-_118864893_118864915	0.00114047	CCUUGGC	ENST00000354673.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11 	ENST00000425327.2|IGSF11|ENSG00000144847.8|immunoglobulin superfamily, member 11
hg19_v2_chr5_+_175875349_175875361	0.00112101	CCUUGGC	ENST00000261942.6|FAF2|ENSG00000113194.8|Fas associated factor family member 2
hg19_v2_chr12_-_54673871_54673925	0.00110725	CCUUGGC	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr17_+_47865917_47866068	0.0010842	CCUUGGC	ENST00000259021.4|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000454930.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000509773.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000510819.1|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7 	ENST00000424009.2|KAT7|ENSG00000136504.7|K(lysine) acetyltransferase 7
hg19_v2_chr1_+_2985760_2985775	0.00107971	CCUUGGC	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chrX_+_49687216_49687265	0.00107628	CCUUGGC	ENST00000376088.3|CLCN5|ENSG00000171365.11|chloride channel, voltage-sensitive 5
hg19_v2_chr2_+_159313452_159313624	0.00107066	CCUUGGC	ENST00000389757.3|PKP4|ENSG00000144283.17|plakophilin 4 	ENST00000389759.3|PKP4|ENSG00000144283.17|plakophilin 4
hg19_v2_chr10_-_105677886_105677995	0.00103703	CCUUGGC	ENST00000224950.3|OBFC1|ENSG00000107960.6|oligonucleotide/oligosaccharide-binding fold containing 1
hg19_v2_chr7_+_140774032_140774032	0.00102179	CCUUGGC	ENST00000565468.1|TMEM178B|ENSG00000261115.1|transmembrane protein 178B
hg19_v2_chr3_+_32859510_32859546	0.000993595	CCUUGGC	ENST00000383763.5|TRIM71|ENSG00000206557.5|tripartite motif containing 71, E3 ubiquitin protein ligase
hg19_v2_chr1_-_33338076_33338105	0.000979963	CCUUGGC	ENST00000496770.1|FNDC5|ENSG00000160097.11|fibronectin type III domain containing 5
hg19_v2_chr2_-_40679186_40679297	0.000971835	CCUUGGC	ENST00000406785.2|SLC8A1|ENSG00000183023.14|solute carrier family 8 (sodium/calcium exchanger), member 1
hg19_v2_chrX_-_50557014_50557060	0.000968483	CCUUGGC	ENST00000376020.2|SHROOM4|ENSG00000158352.11|shroom family member 4
hg19_v2_chrY_+_15016725_15016769	0.000967894	CCUUGGC	ENST00000336079.3|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chrX_+_152953505_152953554	0.000941531	CCUUGGC	ENST00000253122.5|SLC6A8|ENSG00000130821.11|solute carrier family 6 (neurotransmitter transporter), member 8
hg19_v2_chr2_-_96931679_96931756	0.000909851	CCUUGGC	ENST00000258439.3|TMEM127|ENSG00000135956.4|transmembrane protein 127 	ENST00000432959.1|TMEM127|ENSG00000135956.4|transmembrane protein 127
hg19_v2_chr20_-_48099182_48099214	0.000906503	CCUUGGC	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr3_-_50396978_50397041	0.000887778	CCUUGGC	ENST00000266025.3|TMEM115|ENSG00000126062.3|transmembrane protein 115
hg19_v2_chr11_-_82782861_82782949	0.000872687	CCUUGGC	ENST00000524635.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000526205.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000527633.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533486.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000533276.2|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr5_-_107006596_107006651	0.00087078	CCUUGGC	ENST00000333274.6|EFNA5|ENSG00000184349.8|ephrin-A5
hg19_v2_chr5_+_139781445_139781506	0.000865694	CCUUGGC	ENST00000532219.1|ANKHD1-EIF4EBP3|ENSG00000254996.1|ANKHD1-EIF4EBP3 readthrough 	ENST00000394722.3|ANKHD1|ENSG00000131503.16|ankyrin repeat and KH domain containing 1
hg19_v2_chr1_+_42846443_42846502	0.000860687	CCUUGGC	ENST00000410070.2|RIMKLA|ENSG00000177181.10|ribosomal modification protein rimK-like family member A 	ENST00000431473.3|RIMKLA|ENSG00000177181.10|ribosomal modification protein rimK-like family member A
hg19_v2_chr9_+_116638562_116638606	0.000848006	CCUUGGC	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr10_+_48189612_48189612	0.000824267	CCUUGGC	ENST00000453919.1|AGAP9|ENSG00000198035.9|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
hg19_v2_chr15_+_96873921_96873946	0.000815336	CCUUGGC	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr15_+_75118888_75118939	0.00080804	CCUUGGC	ENST00000395018.4|CPLX3|ENSG00000213578.4|complexin 3
hg19_v2_chr3_+_77088989_77089037	0.000735065	CCUUGGC	ENST00000461745.1|ROBO2|ENSG00000185008.13|roundabout, axon guidance receptor, homolog 2 (Drosophila)
hg19_v2_chr4_+_128554081_128554121	0.000717226	CCUUGGC	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr12_-_117319236_117319252	0.000704114	CCUUGGC	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr1_-_117664317_117664414	0.000698029	CCUUGGC	ENST00000256649.4|TRIM45|ENSG00000134253.5|tripartite motif containing 45 	ENST00000369464.3|TRIM45|ENSG00000134253.5|tripartite motif containing 45 	ENST00000485032.1|TRIM45|ENSG00000134253.5|tripartite motif containing 45
hg19_v2_chr9_+_104161123_104161310	0.000671522	CCUUGGC	ENST00000374861.3|ZNF189|ENSG00000136870.6|zinc finger protein 189 	ENST00000339664.2|ZNF189|ENSG00000136870.6|zinc finger protein 189 	ENST00000259395.4|ZNF189|ENSG00000136870.6|zinc finger protein 189
hg19_v2_chr1_+_54519242_54519317	0.000646053	CCUUGGC	ENST00000234827.1|TCEANC2|ENSG00000116205.6|transcription elongation factor A (SII) N-terminal and central domain containing 2
hg19_v2_chr11_+_34127142_34127189	0.000630347	CCUUGGC	ENST00000257829.3|NAT10|ENSG00000135372.4|N-acetyltransferase 10 (GCN5-related) 	ENST00000531159.2|NAT10|ENSG00000135372.4|N-acetyltransferase 10 (GCN5-related)
hg19_v2_chr4_+_172734548_172734654	0.000600444	CCUUGGC	ENST00000506823.1|GALNTL6|ENSG00000174473.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
hg19_v2_chr1_-_150979333_150979384	0.00059451	CCUUGGC	ENST00000312210.5|FAM63A|ENSG00000143409.11|family with sequence similarity 63, member A
hg19_v2_chr2_+_61108650_61108687	0.000591318	CCUUGGC	ENST00000295025.8|REL|ENSG00000162924.9|v-rel avian reticuloendotheliosis viral oncogene homolog
hg19_v2_chr1_+_214161272_214161322	0.000557466	CCUUGGC	ENST00000498508.2|PROX1|ENSG00000117707.11|prospero homeobox 1 	ENST00000366958.4|PROX1|ENSG00000117707.11|prospero homeobox 1
hg19_v2_chr15_+_41952591_41952672	0.000552407	CCUUGGC	ENST00000566718.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000219905.7|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000389936.4|MGA|ENSG00000174197.12|MGA, MAX dimerization protein 	ENST00000545763.1|MGA|ENSG00000174197.12|MGA, MAX dimerization protein
hg19_v2_chr9_-_34126730_34126771	0.000533632	CCUUGGC	ENST00000361264.4|DCAF12|ENSG00000198876.8|DDB1 and CUL4 associated factor 12
hg19_v2_chr1_+_25757376_25757411	0.000520754	CCUUGGC	ENST00000399766.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000399763.3|TMEM57|ENSG00000204178.5|transmembrane protein 57 	ENST00000374343.4|TMEM57|ENSG00000204178.5|transmembrane protein 57
hg19_v2_chr12_-_58240470_58240522	0.000500265	CCUUGGC	ENST00000548823.1|CTDSP2|ENSG00000175215.5|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 	ENST00000398073.2|CTDSP2|ENSG00000175215.5|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
hg19_v2_chr10_-_131762105_131762105	0.000494615	CCUUGGC	ENST00000368648.3|EBF3|ENSG00000108001.9|early B-cell factor 3 	ENST00000355311.5|EBF3|ENSG00000108001.9|early B-cell factor 3
hg19_v2_chr9_-_110251836_110251927	0.000478694	CCUUGGC	ENST00000374672.4|KLF4|ENSG00000136826.10|Kruppel-like factor 4 (gut)
hg19_v2_chr17_-_8151353_8151381	0.000446605	CCUUGGC	ENST00000315684.8|CTC1|ENSG00000178971.9|CTS telomere maintenance complex component 1
hg19_v2_chr14_+_23775971_23776000	0.000440768	CCUUGGC	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr1_+_33207381_33207486	0.000440533	CCUUGGC	ENST00000401073.2|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr7_-_45960850_45960877	0.000435007	CCUUGGC	ENST00000381083.4|IGFBP3|ENSG00000146674.10|insulin-like growth factor binding protein 3 	ENST00000381086.5|IGFBP3|ENSG00000146674.10|insulin-like growth factor binding protein 3 	ENST00000275521.6|IGFBP3|ENSG00000146674.10|insulin-like growth factor binding protein 3
hg19_v2_chr3_-_116164306_116164380	0.000422962	CCUUGGC	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr3_-_11762202_11762226	0.000418569	CCUUGGC	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr1_-_23886285_23886336	0.000415962	CCUUGGC	ENST00000374561.5|ID3|ENSG00000117318.8|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
hg19_v2_chr7_-_71801980_71802013	0.000392205	CCUUGGC	ENST00000329008.5|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr10_-_74114714_74114988	0.000379811	CCUUGGC	ENST00000338820.3|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12 	ENST00000394903.2|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12 	ENST00000444643.2|DNAJB12|ENSG00000148719.10|DnaJ (Hsp40) homolog, subfamily B, member 12
hg19_v2_chr1_+_145507587_145507633	0.000373495	CCUUGGC	ENST00000330165.8|RBM8A|ENSG00000131795.8|RNA binding motif protein 8A 	ENST00000369307.3|RBM8A|ENSG00000131795.8|RNA binding motif protein 8A
hg19_v2_chr12_+_56137064_56137183	0.000368695	CCUUGGC	ENST00000257868.5|GDF11|ENSG00000135414.5|growth differentiation factor 11 	ENST00000546799.1|GDF11|ENSG00000135414.5|growth differentiation factor 11
hg19_v2_chr11_-_64546202_64546258	0.000358911	CCUUGGC	ENST00000377390.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000227503.9|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000377394.3|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000422298.2|SF1|ENSG00000168066.16|splicing factor 1 	ENST00000334944.5|SF1|ENSG00000168066.16|splicing factor 1
hg19_v2_chr11_+_65819802_65819871	0.000352912	CCUUGGC	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr7_+_116312411_116312502	0.000335842	CCUUGGC	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr1_-_119532127_119532179	0.000331918	CCUUGGC	ENST00000207157.3|TBX15|ENSG00000092607.9|T-box 15
hg19_v2_chr13_-_25746416_25746433	0.000329873	CCUUGGC	ENST00000515384.1|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2 	ENST00000357816.2|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr1_-_47134101_47134126	0.000294972	CCUUGGC	ENST00000576409.1|ATPAF1|ENSG00000123472.8|ATP synthase mitochondrial F1 complex assembly factor 1
hg19_v2_chr14_+_103851712_103851878	0.000213836	CCUUGGC	ENST00000440884.3|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000416682.2|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000429436.2|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3 	ENST00000303622.9|MARK3|ENSG00000075413.13|MAP/microtubule affinity-regulating kinase 3
hg19_v2_chr13_-_79177673_79177701	0.000208018	CCUUGGC	ENST00000377208.5|POU4F1|ENSG00000152192.6|POU class 4 homeobox 1
hg19_v2_chrX_-_83757399_83757487	0.000196341	CCUUGGC	ENST00000373177.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000297977.5|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000506585.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000449553.2|HDX|ENSG00000165259.9|highly divergent homeobox
hg19_v2_chr8_-_82024290_82024310	0.00019435	CCUUGGC	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr9_-_135996537_135996563	0.000187591	CCUUGGC	ENST00000372050.3|RALGDS|ENSG00000160271.10|ral guanine nucleotide dissociation stimulator 	ENST00000372047.3|RALGDS|ENSG00000160271.10|ral guanine nucleotide dissociation stimulator
hg19_v2_chr12_-_118797475_118797527	0.000156741	CCUUGGC	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chrX_+_69664706_69664819	0.000117549	CCUUGGC	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr12_+_120972147_120972167	0.000115686	CCUUGGC	ENST00000325954.4|RNF10|ENSG00000022840.11|ring finger protein 10 	ENST00000542438.1|RNF10|ENSG00000022840.11|ring finger protein 10
hg19_v2_chr17_-_62207485_62207511	7.47168e-05	CCUUGGC	ENST00000433197.3|ERN1|ENSG00000178607.11|endoplasmic reticulum to nucleus signaling 1
hg19_v2_chr8_-_97173020_97173041	6.12215e-05	CCUUGGC	ENST00000287020.5|GDF6|ENSG00000156466.8|growth differentiation factor 6
hg19_v2_chr19_+_926000_926046	5.88817e-05	CCUUGGC	ENST00000263620.3|ARID3A|ENSG00000116017.6|AT rich interactive domain 3A (BRIGHT-like)
hg19_v2_chr2_-_85555385_85555548	4.1674e-05	CCUUGGC	ENST00000377386.3|TGOLN2|ENSG00000152291.9|trans-golgi network protein 2
