hg19_v2_chr8_+_97773202_97773233	0.209796	BRCA1	ENST00000519484.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr8_+_97773457_97773475	0.14908	BRCA1	ENST00000521142.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr2_+_196522032_196522173	0.142865	BRCA1	ENST00000418005.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr12_-_96336369_96336413	0.136058	BRCA1	ENST00000546947.1|CCDC38|ENSG00000165972.8|coiled-coil domain containing 38 	ENST00000546386.1|CCDC38|ENSG00000165972.8|coiled-coil domain containing 38
hg19_v2_chrX_-_46187069_46187090	0.103069	BRCA1	ENST00000446884.1|RP1-30G7.2|ENSG00000236751.1|RP1-30G7.2
hg19_v2_chr4_+_619386_619407	0.101416	BRCA1	ENST00000496514.1|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr4_+_619347_619382	0.10081	BRCA1	ENST00000255622.6|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr2_+_223725723_223725765	0.098406	BRCA1	ENST00000535678.1|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3
hg19_v2_chr20_+_9049682_9049710	0.0921255	BRCA1	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr20_+_52105495_52105495	0.0919919	BRCA1	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chrX_+_49644470_49644470	0.0899374	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr3_-_176914191_176914235	0.0898701	BRCA1	ENST00000437738.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000424913.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000443315.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_-_173020056_173020103	0.0883953	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr3_-_27410847_27410951	0.0880122	BRCA1	ENST00000429845.2|NEK10|ENSG00000163491.12|NIMA-related kinase 10 	ENST00000341435.5|NEK10|ENSG00000163491.12|NIMA-related kinase 10 	ENST00000435750.1|NEK10|ENSG00000163491.12|NIMA-related kinase 10
hg19_v2_chr3_-_176914238_176914277	0.082571	BRCA1	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr2_-_25194476_25194500	0.0812051	BRCA1	ENST00000534855.1|DNAJC27|ENSG00000115137.7|DnaJ (Hsp40) homolog, subfamily C, member 27
hg19_v2_chr17_-_42019836_42019844	0.0764626	BRCA1	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr13_-_50018140_50018221	0.0713891	BRCA1	ENST00000410043.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000347776.5|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr5_+_140079919_140080042	0.0699628	BRCA1	ENST00000274712.3|ZMAT2|ENSG00000146007.6|zinc finger, matrin-type 2
hg19_v2_chr10_-_95209_95241	0.0682081	BRCA1	ENST00000332708.5|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII 	ENST00000309812.4|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr2_-_134326009_134326053	0.0656919	BRCA1	ENST00000409261.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5 	ENST00000409213.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5
hg19_v2_chr18_-_49557_49557	0.0643504	BRCA1	ENST00000308911.6|RP11-683L23.1|ENSG00000173213.7|Tubulin beta-8 chain-like protein LOC260334
hg19_v2_chr12_+_510795_510835	0.0598856	BRCA1	ENST00000412006.2|CCDC77|ENSG00000120647.5|coiled-coil domain containing 77
hg19_v2_chr12_-_49418407_49418407	0.0586026	BRCA1	ENST00000526209.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr4_-_140005443_140005650	0.0584868	BRCA1	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr2_+_108994466_108994485	0.0583244	BRCA1	ENST00000272452.2|SULT1C4|ENSG00000198075.5|sulfotransferase family, cytosolic, 1C, member 4
hg19_v2_chr13_-_50018241_50018277	0.0551301	BRCA1	ENST00000409308.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr17_-_7082861_7082883	0.0531591	BRCA1	ENST00000269299.3|ASGR1|ENSG00000141505.7|asialoglycoprotein receptor 1
hg19_v2_chr5_-_124082279_124082320	0.0527618	BRCA1	ENST00000513986.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr9_+_35792151_35792151	0.0517422	BRCA1	ENST00000342694.2|NPR2|ENSG00000159899.10|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)
hg19_v2_chr9_-_124976154_124976177	0.0512016	BRCA1	ENST00000482062.1|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr19_+_46000479_46000502	0.0510314	BRCA1	ENST00000456399.2|PPM1N|ENSG00000213889.6|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
hg19_v2_chr4_-_48782259_48782335	0.0506336	BRCA1	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr1_+_70687137_70687200	0.0505464	BRCA1	ENST00000436161.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr4_+_185570767_185570849	0.0505008	BRCA1	ENST00000314970.6|PRIMPOL|ENSG00000164306.6|primase and polymerase (DNA-directed) 	ENST00000515774.1|PRIMPOL|ENSG00000164306.6|primase and polymerase (DNA-directed) 	ENST00000503752.1|PRIMPOL|ENSG00000164306.6|primase and polymerase (DNA-directed)
hg19_v2_chr12_+_510742_510782	0.0499185	BRCA1	ENST00000239830.4|CCDC77|ENSG00000120647.5|coiled-coil domain containing 77
hg19_v2_chr10_-_95504_95504	0.0498588	BRCA1	ENST00000447903.2|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr13_-_31038370_31038509	0.0475547	BRCA1	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr5_+_145583107_145583149	0.0445552	BRCA1	ENST00000506502.1|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr9_-_86593238_86593367	0.0445369	BRCA1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr1_-_160232291_160232304	0.0440871	BRCA1	ENST00000368074.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000447377.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr1_+_159141397_159141549	0.0434538	BRCA1	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr5_-_68665084_68665143	0.0428209	BRCA1	ENST00000509462.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr17_-_8702667_8702685	0.0427269	BRCA1	ENST00000329805.4|MFSD6L|ENSG00000185156.4|major facilitator superfamily domain containing 6-like
hg19_v2_chr5_-_68665296_68665381	0.041652	BRCA1	ENST00000512152.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000503245.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000512561.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000380822.4|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr5_+_145583156_145583180	0.0415059	BRCA1	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr6_+_16129308_16129402	0.0412653	BRCA1	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr8_-_81083341_81083435	0.0400661	BRCA1	ENST00000519303.2|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr15_-_72612470_72612529	0.0392156	BRCA1	ENST00000287202.5|CELF6|ENSG00000140488.10|CUGBP, Elav-like family member 6
hg19_v2_chr5_-_68664989_68665060	0.037655	BRCA1	ENST00000508954.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr2_+_223725652_223725705	0.0370579	BRCA1	ENST00000357430.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3 	ENST00000392066.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3
hg19_v2_chr5_-_68665469_68665490	0.0351997	BRCA1	ENST00000217893.5|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr13_+_27825446_27825506	0.0350829	BRCA1	ENST00000311549.6|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr5_-_142023766_142023810	0.0337917	BRCA1	ENST00000394496.2|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic)
hg19_v2_chrX_-_70288234_70288291	0.0335633	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr11_-_13484713_13484850	0.0327597	BRCA1	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr14_-_75179774_75179818	0.032712	BRCA1	ENST00000555249.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000556202.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000338772.5|AC007956.1|ENSG00000214670.3|Full-length cDNA 5-PRIME end of clone CS0CAP004YO05 of Thymus of Homo sapiens (human); Uncharacterized protein  	ENST00000356357.4|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1
hg19_v2_chr10_+_28822636_28822692	0.0322224	BRCA1	ENST00000442148.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil 	ENST00000448193.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil
hg19_v2_chr2_+_98703595_98703635	0.0319862	BRCA1	ENST00000435344.1|VWA3B|ENSG00000168658.14|von Willebrand factor A domain containing 3B
hg19_v2_chr6_+_42981922_42982047	0.0318948	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr7_+_99717230_99717321	0.0310827	BRCA1	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr12_-_67072714_67072925	0.0305358	BRCA1	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr5_+_139027877_139027918	0.0291169	BRCA1	ENST00000302517.3|CXXC5|ENSG00000171604.7|CXXC finger protein 5
hg19_v2_chr10_-_61900762_61900779	0.027614	BRCA1	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_-_152118352_152118393	0.0240593	BRCA1	ENST00000331426.5|RBM43|ENSG00000184898.6|RNA binding motif protein 43
hg19_v2_chr12_-_122879969_122879982	0.0238221	BRCA1	ENST00000540304.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr1_-_160232197_160232284	0.0237457	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000610139.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000475733.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000407642.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000368073.3|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000326837.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr12_-_95510743_95510753	0.0236151	BRCA1	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr6_-_42981651_42981706	0.0229412	BRCA1	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr11_+_117947724_117947753	0.0227292	BRCA1	ENST00000534111.1|TMPRSS4|ENSG00000137648.12|transmembrane protease, serine 4
hg19_v2_chr1_-_160232312_160232323	0.0226396	BRCA1	ENST00000440682.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr13_+_27825706_27825741	0.0215523	BRCA1	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr3_+_185303962_185304021	0.0208587	BRCA1	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr14_+_21510385_21510440	0.0204657	BRCA1	ENST00000298690.4|RNASE7|ENSG00000165799.4|ribonuclease, RNase A family, 7
hg19_v2_chr1_-_170043709_170043874	0.0201425	BRCA1	ENST00000367767.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000361580.2|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000538366.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3
hg19_v2_chr14_+_103058948_103059005	0.0195812	BRCA1	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chrX_+_10124977_10125036	0.019148	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr7_+_73868439_73868450	0.0189969	BRCA1	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr10_+_92631709_92631746	0.0189384	BRCA1	ENST00000413330.1|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit 	ENST00000277882.3|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit
hg19_v2_chr19_-_37663332_37663344	0.0185358	BRCA1	ENST00000392157.2|ZNF585A|ENSG00000196967.6|zinc finger protein 585A
hg19_v2_chr11_+_47291645_47291727	0.0177704	BRCA1	ENST00000395336.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402192.2|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr9_-_43133544_43133544	0.0173372	BRCA1	ENST00000254835.2|ANKRD20A3|ENSG00000132498.7|ankyrin repeat domain 20 family, member A3
hg19_v2_chr1_+_161736072_161736093	0.0173345	BRCA1	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chr3_+_187461442_187461474	0.0173262	BRCA1	ENST00000450760.1|RP11-211G3.2|ENSG00000223401.1|RP11-211G3.2
hg19_v2_chr11_+_47291193_47291267	0.0159244	BRCA1	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr1_+_10271674_10271674	0.0156297	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr18_-_23671139_23671190	0.0146299	BRCA1	ENST00000579061.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000542420.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr18_+_19749386_19749404	0.0142208	BRCA1	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr1_+_70687079_70687108	0.0137485	BRCA1	ENST00000395136.2|SRSF11|ENSG00000116754.9|serine/arginine-rich splicing factor 11
hg19_v2_chr11_-_110583912_110583912	0.0130709	BRCA1	ENST00000533353.1|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20 	ENST00000527598.1|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr15_-_58358607_58358621	0.0121218	BRCA1	ENST00000249750.4|ALDH1A2|ENSG00000128918.10|aldehyde dehydrogenase 1 family, member A2
hg19_v2_chr10_+_102295616_102295713	0.0118678	BRCA1	ENST00000299163.6|HIF1AN|ENSG00000166135.9|hypoxia inducible factor 1, alpha subunit inhibitor
hg19_v2_chr1_-_115301235_115301297	0.0112537	BRCA1	ENST00000525878.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chrX_-_10851762_10851782	0.00958405	BRCA1	ENST00000380785.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome) 	ENST00000380787.1|MID1|ENSG00000101871.10|midline 1 (Opitz/BBB syndrome)
hg19_v2_chr8_-_116681221_116681236	0.00865139	BRCA1	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr10_+_93683519_93683594	0.00806438	BRCA1	ENST00000265990.6|BTAF1|ENSG00000095564.9|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa
hg19_v2_chr19_-_6057282_6057313	0.00804103	BRCA1	ENST00000592281.1|RFX2|ENSG00000087903.8|regulatory factor X, 2 (influences HLA class II expression)
hg19_v2_chr12_-_12491608_12491640	0.00759099	BRCA1	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr17_-_41739283_41739322	0.00720264	BRCA1	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr17_+_36584662_36584730	0.00623876	BRCA1	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chrX_-_77150985_77151090	0.00620093	BRCA1	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr6_-_170862322_170862429	0.0054222	BRCA1	ENST00000262193.6|PSMB1|ENSG00000008018.8|proteasome (prosome, macropain) subunit, beta type, 1
hg19_v2_chr7_-_6010263_6010314	0.00323493	BRCA1	ENST00000455618.2|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000405415.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000404406.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000542644.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr2_-_158182105_158182171	0.00277603	BRCA1	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr13_-_99910673_99910682	0.00274446	BRCA1	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr13_+_103046954_103046990	0.0019092	BRCA1	ENST00000606448.1|FGF14-AS2|ENSG00000272143.1|FGF14 antisense RNA 2
hg19_v2_chr14_-_94942548_94942566	0.00160233	BRCA1	ENST00000298845.7|SERPINA9|ENSG00000170054.10|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
hg19_v2_chr7_-_78400364_78400403	0.00113195	BRCA1	ENST00000535697.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr15_-_88799948_88799978	0.00106538	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr14_-_94942527_94942540	0.000793521	BRCA1	ENST00000448305.2|SERPINA9|ENSG00000170054.10|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
