hg19_v2_chr2_+_200775971_200775988	0.322111	AGUGCUU	ENST00000319974.5|C2orf69|ENSG00000178074.5|chromosome 2 open reading frame 69
hg19_v2_chr18_+_9136758_9136852	0.305593	AGUGCUU	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr1_-_70671216_70671303	0.272884	AGUGCUU	ENST00000370952.3|LRRC40|ENSG00000066557.5|leucine rich repeat containing 40
hg19_v2_chr1_-_85156216_85156240	0.268703	AGUGCUU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr13_-_79233314_79233331	0.249177	AGUGCUU	ENST00000282003.6|RNF219|ENSG00000152193.7|ring finger protein 219
hg19_v2_chr3_+_179065474_179065530	0.247385	AGUGCUU	ENST00000471841.1|MFN1|ENSG00000171109.14|mitofusin 1 	ENST00000280653.7|MFN1|ENSG00000171109.14|mitofusin 1
hg19_v2_chr10_+_94050913_94050965	0.225944	AGUGCUU	ENST00000358935.2|MARCH5|ENSG00000198060.5|membrane-associated ring finger (C3HC4) 5
hg19_v2_chr2_-_183903133_183903210	0.224205	AGUGCUU	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr20_+_56884752_56884799	0.218692	AGUGCUU	ENST00000244040.3|RAB22A|ENSG00000124209.3|RAB22A, member RAS oncogene family
hg19_v2_chr7_-_127032741_127032777	0.213846	AGUGCUU	ENST00000393313.1|ZNF800|ENSG00000048405.5|zinc finger protein 800 	ENST00000265827.3|ZNF800|ENSG00000048405.5|zinc finger protein 800 	ENST00000434602.1|ZNF800|ENSG00000048405.5|zinc finger protein 800
hg19_v2_chr11_-_94964354_94964374	0.20154	AGUGCUU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr8_-_53626974_53627032	0.195711	AGUGCUU	ENST00000435644.2|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000518710.1|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000025008.5|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1 	ENST00000517963.1|RB1CC1|ENSG00000023287.8|RB1-inducible coiled-coil 1
hg19_v2_chr2_+_150187020_150187120	0.193379	AGUGCUU	ENST00000334166.4|LYPD6|ENSG00000187123.10|LY6/PLAUR domain containing 6
hg19_v2_chr1_+_214776516_214776565	0.186538	AGUGCUU	ENST00000366955.3|CENPF|ENSG00000117724.8|centromere protein F, 350/400kDa
hg19_v2_chr10_+_98592009_98592061	0.181587	AGUGCUU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr1_-_197169672_197169672	0.18016	AGUGCUU	ENST00000367405.4|ZBTB41|ENSG00000177888.7|zinc finger and BTB domain containing 41
hg19_v2_chr1_+_184356188_184356200	0.174264	AGUGCUU	ENST00000235307.6|C1orf21|ENSG00000116667.8|chromosome 1 open reading frame 21
hg19_v2_chr11_+_9406169_9406210	0.172045	AGUGCUU	ENST00000379719.3|IPO7|ENSG00000205339.5|importin 7 	ENST00000527431.1|IPO7|ENSG00000205339.5|importin 7
hg19_v2_chr3_+_88188254_88188254	0.171003	AGUGCUU	ENST00000309495.5|ZNF654|ENSG00000175105.5|zinc finger protein 654
hg19_v2_chr14_-_53619816_53620056	0.167679	AGUGCUU	ENST00000323669.5|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000395606.1|DDHD1|ENSG00000100523.10|DDHD domain containing 1 	ENST00000357758.3|DDHD1|ENSG00000100523.10|DDHD domain containing 1
hg19_v2_chr12_-_76953284_76953341	0.16656	AGUGCUU	ENST00000547544.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8 	ENST00000393249.2|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr3_-_87040233_87040257	0.165098	AGUGCUU	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr3_-_149093499_149093499	0.164348	AGUGCUU	ENST00000472441.1|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr14_-_35182994_35183034	0.163697	AGUGCUU	ENST00000341223.3|CFL2|ENSG00000165410.10|cofilin 2 (muscle)
hg19_v2_chr12_+_88536067_88536100	0.161647	AGUGCUU	ENST00000549011.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000266712.6|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3 	ENST00000551088.1|TMTC3|ENSG00000139324.7|transmembrane and tetratricopeptide repeat containing 3
hg19_v2_chr1_+_97187318_97187380	0.160368	AGUGCUU	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr2_+_46926048_46926095	0.159007	AGUGCUU	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr2_-_197036289_197036314	0.158195	AGUGCUU	ENST00000263955.4|STK17B|ENSG00000081320.6|serine/threonine kinase 17b
hg19_v2_chr11_-_27494279_27494308	0.157919	AGUGCUU	ENST00000379214.4|LGR4|ENSG00000205213.9|leucine-rich repeat containing G protein-coupled receptor 4
hg19_v2_chr2_+_198380289_198380305	0.157165	AGUGCUU	ENST00000233892.4|MOB4|ENSG00000115540.10|MOB family member 4, phocein 	ENST00000409916.1|MOB4|ENSG00000115540.10|MOB family member 4, phocein
hg19_v2_chr1_-_244013384_244013430	0.155625	AGUGCUU	ENST00000366539.1|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3
hg19_v2_chr2_-_85788605_85788632	0.155359	AGUGCUU	ENST00000233838.4|GGCX|ENSG00000115486.7|gamma-glutamyl carboxylase
hg19_v2_chr11_-_85780086_85780161	0.153785	AGUGCUU	ENST00000532317.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000528256.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000526033.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein
hg19_v2_chr1_+_25071848_25071944	0.152951	AGUGCUU	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr12_-_42538657_42538720	0.152595	AGUGCUU	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chrX_-_20134990_20135060	0.150966	AGUGCUU	ENST00000379651.3|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2 	ENST00000443379.3|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2 	ENST00000379643.5|MAP7D2|ENSG00000184368.11|MAP7 domain containing 2
hg19_v2_chrX_-_20284958_20285039	0.141212	AGUGCUU	ENST00000379565.3|RPS6KA3|ENSG00000177189.8|ribosomal protein S6 kinase, 90kDa, polypeptide 3
hg19_v2_chr2_+_26256938_26257031	0.140397	AGUGCUU	ENST00000264710.4|RAB10|ENSG00000084733.6|RAB10, member RAS oncogene family
hg19_v2_chr11_+_120894781_120894840	0.139731	AGUGCUU	ENST00000529397.1|TBCEL|ENSG00000154114.8|tubulin folding cofactor E-like 	ENST00000528512.1|TBCEL|ENSG00000154114.8|tubulin folding cofactor E-like 	ENST00000422003.2|TBCEL|ENSG00000154114.8|tubulin folding cofactor E-like
hg19_v2_chr21_-_40685477_40685496	0.134318	AGUGCUU	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr1_+_26438289_26438352	0.131872	AGUGCUU	ENST00000374271.4|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like 	ENST00000374269.1|PDIK1L|ENSG00000175087.5|PDLIM1 interacting kinase 1 like
hg19_v2_chr4_+_174089904_174089921	0.130992	AGUGCUU	ENST00000265000.4|GALNT7|ENSG00000109586.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
hg19_v2_chr10_-_6104253_6104288	0.129725	AGUGCUU	ENST00000256876.6|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha 	ENST00000379954.1|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha 	ENST00000379959.3|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha
hg19_v2_chr6_-_71666732_71666769	0.125881	AGUGCUU	ENST00000230053.6|B3GAT2|ENSG00000112309.6|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
hg19_v2_chr18_-_18691739_18691812	0.125759	AGUGCUU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr6_+_14117872_14118012	0.124785	AGUGCUU	ENST00000379153.3|CD83|ENSG00000112149.5|CD83 molecule
hg19_v2_chr5_+_133706865_133706888	0.118026	AGUGCUU	ENST00000265339.2|UBE2B|ENSG00000119048.3|ubiquitin-conjugating enzyme E2B
hg19_v2_chr13_-_27745936_27746033	0.117808	AGUGCUU	ENST00000282344.6|USP12|ENSG00000152484.9|ubiquitin specific peptidase 12
hg19_v2_chr13_-_30424821_30424847	0.11762	AGUGCUU	ENST00000380680.4|UBL3|ENSG00000122042.9|ubiquitin-like 3
hg19_v2_chr1_-_100598444_100598532	0.117413	AGUGCUU	ENST00000535161.1|SASS6|ENSG00000156876.8|spindle assembly 6 homolog (C. elegans) 	ENST00000287482.5|SASS6|ENSG00000156876.8|spindle assembly 6 homolog (C. elegans)
hg19_v2_chr10_+_78078088_78078092	0.116963	AGUGCUU	ENST00000496424.2|C10orf11|ENSG00000148655.10|chromosome 10 open reading frame 11
hg19_v2_chr11_-_77532050_77532066	0.114666	AGUGCUU	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr5_+_98104978_98105010	0.11339	AGUGCUU	ENST00000308234.7|RGMB|ENSG00000174136.7|repulsive guidance molecule family member b
hg19_v2_chr11_-_67980744_67980882	0.112324	AGUGCUU	ENST00000401547.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000453170.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000304363.4|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr5_+_74807581_74807724	0.109934	AGUGCUU	ENST00000241436.4|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa 	ENST00000352007.5|POLK|ENSG00000122008.11|polymerase (DNA directed) kappa
hg19_v2_chr3_-_176914238_176914277	0.108938	AGUGCUU	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_+_210406121_210406162	0.108494	AGUGCUU	ENST00000367012.3|SERTAD4|ENSG00000082497.7|SERTA domain containing 4
hg19_v2_chr18_-_51751132_51751158	0.108277	AGUGCUU	ENST00000256429.3|MBD2|ENSG00000134046.7|methyl-CpG binding domain protein 2
hg19_v2_chr6_-_116381918_116381977	0.107457	AGUGCUU	ENST00000606080.1|FRK|ENSG00000111816.6|fyn-related kinase
hg19_v2_chrX_+_16737718_16737778	0.106283	AGUGCUU	ENST00000380155.3|SYAP1|ENSG00000169895.5|synapse associated protein 1
hg19_v2_chr4_-_99851766_99851788	0.105887	AGUGCUU	ENST00000450253.2|EIF4E|ENSG00000151247.8|eukaryotic translation initiation factor 4E
hg19_v2_chr16_-_57318566_57318599	0.105376	AGUGCUU	ENST00000569059.1|PLLP|ENSG00000102934.5|plasmolipin 	ENST00000219207.5|PLLP|ENSG00000102934.5|plasmolipin
hg19_v2_chr2_+_178257372_178257523	0.104605	AGUGCUU	ENST00000264167.4|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase 	ENST00000409888.1|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase
hg19_v2_chr5_-_171433819_171433911	0.103935	AGUGCUU	ENST00000296933.6|FBXW11|ENSG00000072803.13|F-box and WD repeat domain containing 11
hg19_v2_chr15_-_78526942_78527049	0.103229	AGUGCUU	ENST00000258873.4|ACSBG1|ENSG00000103740.5|acyl-CoA synthetase bubblegum family member 1
hg19_v2_chr1_+_162467595_162467655	0.10302	AGUGCUU	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr2_+_26568965_26569025	0.101674	AGUGCUU	ENST00000260585.7|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) 	ENST00000447170.1|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
hg19_v2_chr18_-_72921303_72921339	0.0999911	AGUGCUU	ENST00000322342.3|ZADH2|ENSG00000180011.6|zinc binding alcohol dehydrogenase domain containing 2
hg19_v2_chr20_+_5986727_5986755	0.0999286	AGUGCUU	ENST00000378863.4|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr9_-_123476719_123476810	0.0993611	AGUGCUU	ENST00000373930.3|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr9_-_125693757_125693818	0.0983457	AGUGCUU	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr2_+_29338236_29338439	0.0980076	AGUGCUU	ENST00000320081.5|CLIP4|ENSG00000115295.15|CAP-GLY domain containing linker protein family, member 4
hg19_v2_chr9_+_129567282_129567353	0.0980062	AGUGCUU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr6_-_111136513_111136525	0.0974949	AGUGCUU	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr10_+_112631547_112631596	0.0974675	AGUGCUU	ENST00000280154.7|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor) 	ENST00000393104.2|PDCD4|ENSG00000150593.11|programmed cell death 4 (neoplastic transformation inhibitor)
hg19_v2_chr1_+_89149905_89149995	0.0972423	AGUGCUU	ENST00000316005.7|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370521.3|PKN2|ENSG00000065243.14|protein kinase N2 	ENST00000370505.3|PKN2|ENSG00000065243.14|protein kinase N2
hg19_v2_chr1_-_173991434_173991556	0.0955311	AGUGCUU	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr12_-_46766577_46766650	0.0926665	AGUGCUU	ENST00000256689.5|SLC38A2|ENSG00000134294.9|solute carrier family 38, member 2
hg19_v2_chr2_-_235405679_235405739	0.0926249	AGUGCUU	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chrX_-_71933888_71934180	0.0907372	AGUGCUU	ENST00000373542.4|PHKA1|ENSG00000067177.10|phosphorylase kinase, alpha 1 (muscle) 	ENST00000339490.3|PHKA1|ENSG00000067177.10|phosphorylase kinase, alpha 1 (muscle) 	ENST00000541944.1|PHKA1|ENSG00000067177.10|phosphorylase kinase, alpha 1 (muscle) 	ENST00000373539.3|PHKA1|ENSG00000067177.10|phosphorylase kinase, alpha 1 (muscle) 	ENST00000373545.3|PHKA1|ENSG00000067177.10|phosphorylase kinase, alpha 1 (muscle)
hg19_v2_chr11_+_24518723_24518757	0.0906289	AGUGCUU	ENST00000336930.6|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000529015.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2 	ENST00000533227.1|LUZP2|ENSG00000187398.7|leucine zipper protein 2
hg19_v2_chr9_-_99180597_99180614	0.0906158	AGUGCUU	ENST00000375256.4|ZNF367|ENSG00000165244.6|zinc finger protein 367
hg19_v2_chr11_-_96076334_96076419	0.0894362	AGUGCUU	ENST00000524717.1|MAML2|ENSG00000184384.9|mastermind-like 2 (Drosophila)
hg19_v2_chr19_-_10121144_10121155	0.0884477	AGUGCUU	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr10_+_92980517_92980550	0.0877327	AGUGCUU	ENST00000336126.5|PCGF5|ENSG00000180628.10|polycomb group ring finger 5
hg19_v2_chrX_+_105412290_105412313	0.0874973	AGUGCUU	ENST00000357175.2|MUM1L1|ENSG00000157502.8|melanoma associated antigen (mutated) 1-like 1 	ENST00000337685.2|MUM1L1|ENSG00000157502.8|melanoma associated antigen (mutated) 1-like 1
hg19_v2_chr4_-_42659102_42659161	0.0874804	AGUGCUU	ENST00000264449.10|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000510289.1|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000381668.5|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
hg19_v2_chr9_-_111929560_111929571	0.087249	AGUGCUU	ENST00000561981.2|FRRS1L|ENSG00000260230.2|ferric-chelate reductase 1-like
hg19_v2_chr10_+_120789223_120789231	0.086522	AGUGCUU	ENST00000425699.1|NANOS1|ENSG00000188613.5|nanos homolog 1 (Drosophila)
hg19_v2_chr1_-_205180664_205180727	0.0848081	AGUGCUU	ENST00000367161.3|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase 	ENST00000367162.3|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase 	ENST00000367160.4|DSTYK|ENSG00000133059.12|dual serine/threonine and tyrosine protein kinase
hg19_v2_chr1_-_78148324_78148365	0.0843182	AGUGCUU	ENST00000370801.3|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3 	ENST00000433749.1|ZZZ3|ENSG00000036549.8|zinc finger, ZZ-type containing 3
hg19_v2_chr2_-_11484710_11484812	0.0840365	AGUGCUU	ENST00000315872.6|ROCK2|ENSG00000134318.9|Rho-associated, coiled-coil containing protein kinase 2
hg19_v2_chr1_-_55680762_55680786	0.0839098	AGUGCUU	ENST00000407756.1|USP24|ENSG00000162402.8|ubiquitin specific peptidase 24 	ENST00000294383.6|USP24|ENSG00000162402.8|ubiquitin specific peptidase 24
hg19_v2_chr3_-_122233723_122233797	0.0834121	AGUGCUU	ENST00000493510.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000344337.6|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000476916.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5) 	ENST00000465882.1|KPNA1|ENSG00000114030.8|karyopherin alpha 1 (importin alpha 5)
hg19_v2_chr7_+_99613195_99613206	0.0822984	AGUGCUU	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr7_-_40174201_40174258	0.0821841	AGUGCUU	ENST00000306984.6|MPLKIP|ENSG00000168303.6|M-phase specific PLK1 interacting protein
hg19_v2_chr13_+_39612442_39612482	0.0819344	AGUGCUU	ENST00000470258.1|NHLRC3|ENSG00000188811.8|NHL repeat containing 3 	ENST00000379600.3|NHLRC3|ENSG00000188811.8|NHL repeat containing 3
hg19_v2_chrX_+_77166172_77166261	0.0819015	AGUGCUU	ENST00000343533.5|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000350425.4|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide 	ENST00000341514.6|ATP7A|ENSG00000165240.13|ATPase, Cu++ transporting, alpha polypeptide
hg19_v2_chrX_+_24483338_24483573	0.0817198	AGUGCUU	ENST00000379162.4|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3 	ENST00000441463.2|PDK3|ENSG00000067992.8|pyruvate dehydrogenase kinase, isozyme 3
hg19_v2_chr2_-_43453734_43453751	0.0815078	AGUGCUU	ENST00000282388.3|ZFP36L2|ENSG00000152518.5|ZFP36 ring finger protein-like 2
hg19_v2_chr16_-_3493528_3493542	0.0812793	AGUGCUU	ENST00000301744.4|ZNF597|ENSG00000167981.4|zinc finger protein 597
hg19_v2_chr3_+_152017181_152017229	0.0786898	AGUGCUU	ENST00000498502.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000324196.5|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000545754.1|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1 	ENST00000357472.3|MBNL1|ENSG00000152601.13|muscleblind-like splicing regulator 1
hg19_v2_chr5_-_137368708_137368721	0.0783627	AGUGCUU	ENST00000033079.3|FAM13B|ENSG00000031003.6|family with sequence similarity 13, member B
hg19_v2_chr1_+_93913713_93913839	0.0777785	AGUGCUU	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr12_+_32655048_32655108	0.0766094	AGUGCUU	ENST00000427716.2|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4 	ENST00000266482.3|FGD4|ENSG00000139132.10|FYVE, RhoGEF and PH domain containing 4
hg19_v2_chrX_+_24072833_24072907	0.0756969	AGUGCUU	ENST00000253039.4|EIF2S3|ENSG00000130741.6|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa
hg19_v2_chr11_-_105892937_105893130	0.0746889	AGUGCUU	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr14_-_70883708_70883819	0.0746176	AGUGCUU	ENST00000256366.4|SYNJ2BP|ENSG00000213463.3|synaptojanin 2 binding protein
hg19_v2_chr14_-_77965151_77965210	0.0736135	AGUGCUU	ENST00000393684.3|ISM2|ENSG00000100593.13|isthmin 2 	ENST00000493585.1|ISM2|ENSG00000100593.13|isthmin 2 	ENST00000554801.2|ISM2|ENSG00000100593.13|isthmin 2 	ENST00000342219.4|ISM2|ENSG00000100593.13|isthmin 2 	ENST00000412904.1|ISM2|ENSG00000100593.13|isthmin 2 	ENST00000429906.1|ISM2|ENSG00000100593.13|isthmin 2
hg19_v2_chr8_-_124408652_124408712	0.0733146	AGUGCUU	ENST00000287394.5|ATAD2|ENSG00000156802.8|ATPase family, AAA domain containing 2
hg19_v2_chr6_+_24667257_24667365	0.0729912	AGUGCUU	ENST00000537591.1|ACOT13|ENSG00000112304.6|acyl-CoA thioesterase 13 	ENST00000230048.4|ACOT13|ENSG00000112304.6|acyl-CoA thioesterase 13
hg19_v2_chr4_-_185395672_185395734	0.0729443	AGUGCUU	ENST00000393593.3|IRF2|ENSG00000168310.6|interferon regulatory factor 2
hg19_v2_chr4_-_125633876_125633897	0.0728617	AGUGCUU	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chr7_+_77325738_77325789	0.0725911	AGUGCUU	ENST00000334955.8|RSBN1L|ENSG00000187257.10|round spermatid basic protein 1-like
hg19_v2_chr16_-_47495170_47495190	0.0724467	AGUGCUU	ENST00000320640.6|ITFG1|ENSG00000129636.8|integrin alpha FG-GAP repeat containing 1 	ENST00000544001.2|ITFG1|ENSG00000129636.8|integrin alpha FG-GAP repeat containing 1
hg19_v2_chr3_+_93781728_93781760	0.0712799	AGUGCUU	ENST00000314622.4|NSUN3|ENSG00000178694.5|NOP2/Sun domain family, member 3
hg19_v2_chr11_+_32914579_32914724	0.0705984	AGUGCUU	ENST00000399302.2|QSER1|ENSG00000060749.10|glutamine and serine rich 1
hg19_v2_chr2_-_166651191_166651213	0.0704099	AGUGCUU	ENST00000392701.3|GALNT3|ENSG00000115339.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
hg19_v2_chrX_+_128674213_128674285	0.0685696	AGUGCUU	ENST00000371113.4|OCRL|ENSG00000122126.11|oculocerebrorenal syndrome of Lowe 	ENST00000357121.5|OCRL|ENSG00000122126.11|oculocerebrorenal syndrome of Lowe
hg19_v2_chr8_-_103876965_103877012	0.0682651	AGUGCUU	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chr1_-_20812690_20812763	0.0679939	AGUGCUU	ENST00000375078.3|CAMK2N1|ENSG00000162545.5|calcium/calmodulin-dependent protein kinase II inhibitor 1
hg19_v2_chrX_-_30885319_30885319	0.0677756	AGUGCUU	ENST00000378933.1|TAB3|ENSG00000157625.11|TGF-beta activated kinase 1/MAP3K7 binding protein 3
hg19_v2_chr9_+_19408999_19409057	0.0675479	AGUGCUU	ENST00000340967.2|ACER2|ENSG00000177076.4|alkaline ceramidase 2
hg19_v2_chr17_-_60142609_60142657	0.0673027	AGUGCUU	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr5_-_32444828_32444872	0.0668161	AGUGCUU	ENST00000265069.8|ZFR|ENSG00000056097.11|zinc finger RNA binding protein
hg19_v2_chr7_-_28220354_28220441	0.0668	AGUGCUU	ENST00000283928.5|JAZF1|ENSG00000153814.7|JAZF zinc finger 1
hg19_v2_chr17_-_38083843_38083864	0.0664577	AGUGCUU	ENST00000304046.2|ORMDL3|ENSG00000172057.5|ORM1-like 3 (S. cerevisiae) 	ENST00000579695.1|ORMDL3|ENSG00000172057.5|ORM1-like 3 (S. cerevisiae)
hg19_v2_chr1_+_244998602_244998646	0.0661722	AGUGCUU	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr6_+_149887377_149887430	0.066092	AGUGCUU	ENST00000367419.5|GINM1|ENSG00000055211.8|glycoprotein integral membrane 1
hg19_v2_chr6_+_18155560_18155624	0.0655787	AGUGCUU	ENST00000546309.2|KDM1B|ENSG00000165097.9|lysine (K)-specific demethylase 1B 	ENST00000388870.2|KDM1B|ENSG00000165097.9|lysine (K)-specific demethylase 1B 	ENST00000397244.1|KDM1B|ENSG00000165097.9|lysine (K)-specific demethylase 1B
hg19_v2_chr6_-_146135880_146135952	0.0651772	AGUGCUU	ENST00000237281.4|FBXO30|ENSG00000118496.4|F-box protein 30
hg19_v2_chr1_+_28995231_28995250	0.0631306	AGUGCUU	ENST00000373816.1|GMEB1|ENSG00000162419.8|glucocorticoid modulatory element binding protein 1
hg19_v2_chr10_+_115614370_115614436	0.0629175	AGUGCUU	ENST00000369301.3|NHLRC2|ENSG00000196865.4|NHL repeat containing 2
hg19_v2_chr17_-_40897043_40897087	0.0628456	AGUGCUU	ENST00000428826.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592492.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000585893.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000593214.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000590078.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586382.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000415827.2|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000592743.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000586089.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila) 	ENST00000435174.1|EZH1|ENSG00000108799.8|enhancer of zeste homolog 1 (Drosophila)
hg19_v2_chr3_+_37493610_37493651	0.0616684	AGUGCUU	ENST00000264741.5|ITGA9|ENSG00000144668.7|integrin, alpha 9
hg19_v2_chr8_-_119634141_119634234	0.0609485	AGUGCUU	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr6_-_56707943_56708013	0.0604766	AGUGCUU	ENST00000370769.4|DST|ENSG00000151914.13|dystonin 	ENST00000421834.2|DST|ENSG00000151914.13|dystonin 	ENST00000312431.6|DST|ENSG00000151914.13|dystonin 	ENST00000361203.3|DST|ENSG00000151914.13|dystonin 	ENST00000523817.1|DST|ENSG00000151914.13|dystonin
hg19_v2_chr2_-_86790593_86790614	0.0599996	AGUGCUU	ENST00000263856.4|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000409225.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3
hg19_v2_chr1_+_112162381_112162431	0.0597532	AGUGCUU	ENST00000433097.1|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000369709.3|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family 	ENST00000436150.2|RAP1A|ENSG00000116473.10|RAP1A, member of RAS oncogene family
hg19_v2_chr9_+_2621798_2621834	0.0596554	AGUGCUU	ENST00000382100.3|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr5_+_172483347_172483407	0.0595759	AGUGCUU	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr13_-_26795840_26795995	0.0590176	AGUGCUU	ENST00000381570.3|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6 	ENST00000399762.2|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6 	ENST00000346166.3|RNF6|ENSG00000127870.12|ring finger protein (C3H2C3 type) 6
hg19_v2_chr17_+_28705921_28706000	0.058816	AGUGCUU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr11_-_108464321_108464380	0.0579008	AGUGCUU	ENST00000265843.4|EXPH5|ENSG00000110723.7|exophilin 5
hg19_v2_chr12_-_95467356_95467479	0.0576393	AGUGCUU	ENST00000393101.3|NR2C1|ENSG00000120798.12|nuclear receptor subfamily 2, group C, member 1 	ENST00000333003.5|NR2C1|ENSG00000120798.12|nuclear receptor subfamily 2, group C, member 1
hg19_v2_chr3_+_132136331_132136378	0.057295	AGUGCUU	ENST00000260818.6|DNAJC13|ENSG00000138246.11|DnaJ (Hsp40) homolog, subfamily C, member 13
hg19_v2_chr4_-_102268628_102268693	0.0558481	AGUGCUU	ENST00000323055.6|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000512215.1|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme 	ENST00000394854.3|PPP3CA|ENSG00000138814.12|protein phosphatase 3, catalytic subunit, alpha isozyme
hg19_v2_chr14_+_67826709_67826751	0.0554233	AGUGCUU	ENST00000256383.4|EIF2S1|ENSG00000134001.8|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
hg19_v2_chr16_-_47007545_47007699	0.0544971	AGUGCUU	ENST00000317089.5|DNAJA2|ENSG00000069345.7|DnaJ (Hsp40) homolog, subfamily A, member 2
hg19_v2_chr5_+_142149955_142150000	0.053807	AGUGCUU	ENST00000378004.3|ARHGAP26|ENSG00000145819.11|Rho GTPase activating protein 26
hg19_v2_chr3_+_23244780_23244837	0.0536171	AGUGCUU	ENST00000396703.1|UBE2E2|ENSG00000182247.5|ubiquitin-conjugating enzyme E2E 2
hg19_v2_chr19_-_4066890_4066943	0.0535795	AGUGCUU	ENST00000322357.4|ZBTB7A|ENSG00000178951.4|zinc finger and BTB domain containing 7A
hg19_v2_chr8_+_81397876_81397902	0.053244	AGUGCUU	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr1_+_200708671_200708744	0.0532028	AGUGCUU	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr10_+_43633914_43633935	0.0528127	AGUGCUU	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr6_-_90348440_90348485	0.0526492	AGUGCUU	ENST00000520441.1|LYRM2|ENSG00000083099.6|LYR motif containing 2 	ENST00000520318.1|LYRM2|ENSG00000083099.6|LYR motif containing 2 	ENST00000523377.1|LYRM2|ENSG00000083099.6|LYR motif containing 2
hg19_v2_chr6_+_57037089_57037146	0.052367	AGUGCUU	ENST00000370693.5|BAG2|ENSG00000112208.10|BCL2-associated athanogene 2
hg19_v2_chr10_+_180987_181009	0.0511009	AGUGCUU	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr22_+_29469012_29469066	0.0509456	AGUGCUU	ENST00000400335.4|KREMEN1|ENSG00000183762.8|kringle containing transmembrane protein 1 	ENST00000400338.2|KREMEN1|ENSG00000183762.8|kringle containing transmembrane protein 1
hg19_v2_chr8_+_82644669_82644738	0.0507296	AGUGCUU	ENST00000297265.4|CHMP4C|ENSG00000164695.4|charged multivesicular body protein 4C
hg19_v2_chr18_-_67624160_67624238	0.0505488	AGUGCUU	ENST00000581982.1|CD226|ENSG00000150637.4|CD226 molecule 	ENST00000280200.4|CD226|ENSG00000150637.4|CD226 molecule
hg19_v2_chr12_+_51442101_51442129	0.0499995	AGUGCUU	ENST00000550929.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000262055.4|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000550442.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000549340.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548209.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548251.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000550814.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000547660.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000380123.2|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000548401.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000418425.2|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000547008.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1 	ENST00000552739.1|LETMD1|ENSG00000050426.11|LETM1 domain containing 1
hg19_v2_chr4_-_53525406_53525502	0.0495282	AGUGCUU	ENST00000451218.2|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46 	ENST00000441222.3|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr6_+_45389893_45389914	0.0495282	AGUGCUU	ENST00000371432.3|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr2_+_173940442_173940625	0.0494983	AGUGCUU	ENST00000409176.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000338983.3|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT  	ENST00000431503.2|MLTK|ENSG00000091436.12|Mitogen-activated protein kinase kinase kinase MLT
hg19_v2_chr13_+_115047053_115047095	0.0487972	AGUGCUU	ENST00000375299.3|UPF3A|ENSG00000169062.10|UPF3 regulator of nonsense transcripts homolog A (yeast)
hg19_v2_chr17_-_71088797_71088851	0.0485513	AGUGCUU	ENST00000580557.1|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11 	ENST00000579732.1|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11 	ENST00000578620.1|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11 	ENST00000542342.2|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11 	ENST00000255559.3|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11 	ENST00000579018.1|SLC39A11|ENSG00000133195.7|solute carrier family 39, member 11
hg19_v2_chr1_+_203595903_203595934	0.0485205	AGUGCUU	ENST00000367218.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000367219.3|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4 	ENST00000391954.2|ATP2B4|ENSG00000058668.10|ATPase, Ca++ transporting, plasma membrane 4
hg19_v2_chr10_-_120514720_120514758	0.0480879	AGUGCUU	ENST00000369151.3|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1 	ENST00000340214.4|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1
hg19_v2_chr12_+_107349497_107349578	0.0478689	AGUGCUU	ENST00000548125.1|C12orf23|ENSG00000151135.5|chromosome 12 open reading frame 23 	ENST00000280756.4|C12orf23|ENSG00000151135.5|chromosome 12 open reading frame 23
hg19_v2_chr5_-_89825328_89825422	0.0475456	AGUGCUU	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr2_+_120517174_120517207	0.0474931	AGUGCUU	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chrX_-_99986494_99986529	0.046809	AGUGCUU	ENST00000372989.1|SYTL4|ENSG00000102362.11|synaptotagmin-like 4 	ENST00000455616.1|SYTL4|ENSG00000102362.11|synaptotagmin-like 4 	ENST00000454200.2|SYTL4|ENSG00000102362.11|synaptotagmin-like 4 	ENST00000276141.6|SYTL4|ENSG00000102362.11|synaptotagmin-like 4
hg19_v2_chr17_+_57642886_57643006	0.0464894	AGUGCUU	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chr10_-_61469837_61469837	0.0463973	AGUGCUU	ENST00000395348.3|SLC16A9|ENSG00000165449.7|solute carrier family 16, member 9
hg19_v2_chr7_+_97910981_97911006	0.046051	AGUGCUU	ENST00000297290.3|BRI3|ENSG00000164713.5|brain protein I3
hg19_v2_chr6_-_99395787_99395878	0.0445976	AGUGCUU	ENST00000369244.2|FBXL4|ENSG00000112234.4|F-box and leucine-rich repeat protein 4 	ENST00000229971.1|FBXL4|ENSG00000112234.4|F-box and leucine-rich repeat protein 4
hg19_v2_chr1_-_36235529_36235543	0.0445232	AGUGCUU	ENST00000318121.3|CLSPN|ENSG00000092853.9|claspin 	ENST00000373220.3|CLSPN|ENSG00000092853.9|claspin 	ENST00000520551.1|CLSPN|ENSG00000092853.9|claspin
hg19_v2_chr9_-_86571628_86571639	0.0444592	AGUGCUU	ENST00000376344.3|C9orf64|ENSG00000165118.10|chromosome 9 open reading frame 64
hg19_v2_chrX_-_70288234_70288291	0.0442881	AGUGCUU	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr11_+_58346584_58346607	0.043947	AGUGCUU	ENST00000316059.6|ZFP91|ENSG00000186660.14|ZFP91 zinc finger protein
hg19_v2_chr6_+_41040678_41040722	0.0437985	AGUGCUU	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr15_+_76135622_76135719	0.0433999	AGUGCUU	ENST00000338677.4|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2 	ENST00000267938.4|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2 	ENST00000569423.1|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2
hg19_v2_chr10_-_73976025_73976074	0.0432387	AGUGCUU	ENST00000342444.4|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000533958.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000527593.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000394915.3|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000530461.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000317168.6|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000524829.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1
hg19_v2_chr2_+_139259324_139259389	0.0425202	AGUGCUU	ENST00000280098.4|SPOPL|ENSG00000144228.4|speckle-type POZ protein-like
hg19_v2_chr2_+_170683942_170683972	0.0422309	AGUGCUU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr4_+_99916765_99916776	0.0420675	AGUGCUU	ENST00000296411.6|METAP1|ENSG00000164024.7|methionyl aminopeptidase 1
hg19_v2_chr10_-_27529716_27529756	0.0418345	AGUGCUU	ENST00000375897.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5 	ENST00000396271.3|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr1_+_36396677_36396749	0.0414857	AGUGCUU	ENST00000373191.4|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3 	ENST00000397828.2|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr12_+_4382917_4382938	0.0411634	AGUGCUU	ENST00000261254.3|CCND2|ENSG00000118971.3|cyclin D2
hg19_v2_chr2_+_242255275_242255286	0.0404771	AGUGCUU	ENST00000391971.2|SEPT2|ENSG00000168385.13|septin 2
hg19_v2_chr15_+_66161871_66161893	0.040251	AGUGCUU	ENST00000569896.1|RAB11A|ENSG00000103769.5|RAB11A, member RAS oncogene family
hg19_v2_chr4_-_68995571_68995598	0.040167	AGUGCUU	ENST00000356291.2|TMPRSS11F|ENSG00000198092.5|transmembrane protease, serine 11F
hg19_v2_chr1_-_207224307_207224422	0.0397032	AGUGCUU	ENST00000315927.4|YOD1|ENSG00000180667.6|YOD1 deubiquitinase
hg19_v2_chr2_+_99953816_99953894	0.0396575	AGUGCUU	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr5_-_39074479_39074515	0.0394644	AGUGCUU	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr12_-_65146636_65146651	0.0393249	AGUGCUU	ENST00000418919.2|GNS|ENSG00000135677.6|glucosamine (N-acetyl)-6-sulfatase
hg19_v2_chr6_+_87865262_87865339	0.0393207	AGUGCUU	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr2_+_118846008_118846100	0.0393075	AGUGCUU	ENST00000245787.4|INSIG2|ENSG00000125629.10|insulin induced gene 2
hg19_v2_chr13_-_22033392_22033510	0.0392859	AGUGCUU	ENST00000320220.9|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000415724.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000422251.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000382466.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000542645.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000400590.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20
hg19_v2_chr17_-_5138099_5138164	0.0385141	AGUGCUU	ENST00000571800.1|SCIMP|ENSG00000161929.10|SLP adaptor and CSK interacting membrane protein 	ENST00000574081.1|SCIMP|ENSG00000161929.10|SLP adaptor and CSK interacting membrane protein 	ENST00000399600.4|SCIMP|ENSG00000161929.10|SLP adaptor and CSK interacting membrane protein 	ENST00000574297.1|SCIMP|ENSG00000161929.10|SLP adaptor and CSK interacting membrane protein
hg19_v2_chr2_-_25194963_25194976	0.0383189	AGUGCUU	ENST00000264711.2|DNAJC27|ENSG00000115137.7|DnaJ (Hsp40) homolog, subfamily C, member 27
hg19_v2_chr13_+_29233218_29233332	0.0382841	AGUGCUU	ENST00000380842.4|POMP|ENSG00000132963.7|proteasome maturation protein
hg19_v2_chr1_+_20512568_20512629	0.0381354	AGUGCUU	ENST00000375099.3|UBXN10|ENSG00000162543.5|UBX domain protein 10
hg19_v2_chr7_-_102789629_102789685	0.0377511	AGUGCUU	ENST00000417955.1|NAPEPLD|ENSG00000161048.7|N-acyl phosphatidylethanolamine phospholipase D 	ENST00000341533.4|NAPEPLD|ENSG00000161048.7|N-acyl phosphatidylethanolamine phospholipase D 	ENST00000425379.1|NAPEPLD|ENSG00000161048.7|N-acyl phosphatidylethanolamine phospholipase D
hg19_v2_chr2_-_208030647_208030689	0.037338	AGUGCUU	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr13_+_20532807_20532841	0.0372778	AGUGCUU	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr4_-_111119804_111119832	0.037119	AGUGCUU	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr3_-_155572164_155572236	0.0367815	AGUGCUU	ENST00000392845.3|SLC33A1|ENSG00000169359.9|solute carrier family 33 (acetyl-CoA transporter), member 1 	ENST00000359479.3|SLC33A1|ENSG00000169359.9|solute carrier family 33 (acetyl-CoA transporter), member 1
hg19_v2_chr8_+_9009202_9009252	0.0361712	AGUGCUU	ENST00000518496.1|RP11-10A14.4|ENSG00000253426.1|Uncharacterized protein
hg19_v2_chr1_+_67390578_67390698	0.0361202	AGUGCUU	ENST00000371018.3|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000355977.6|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000357692.2|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000401041.1|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000371016.1|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000371014.1|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator 	ENST00000371012.2|MIER1|ENSG00000198160.10|mesoderm induction early response 1, transcriptional regulator
hg19_v2_chr14_-_27066636_27066701	0.0357624	AGUGCUU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr1_-_205601064_205601090	0.0354965	AGUGCUU	ENST00000357992.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1) 	ENST00000289703.4|ELK4|ENSG00000158711.9|ELK4, ETS-domain protein (SRF accessory protein 1)
hg19_v2_chr10_+_70320413_70320413	0.0354629	AGUGCUU	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr20_+_30865429_30865480	0.0350474	AGUGCUU	ENST00000375712.3|KIF3B|ENSG00000101350.6|kinesin family member 3B
hg19_v2_chr2_-_214014959_214015058	0.034897	AGUGCUU	ENST00000442445.1|IKZF2|ENSG00000030419.12|IKAROS family zinc finger 2 (Helios) 	ENST00000457361.1|IKZF2|ENSG00000030419.12|IKAROS family zinc finger 2 (Helios) 	ENST00000342002.2|IKZF2|ENSG00000030419.12|IKAROS family zinc finger 2 (Helios)
hg19_v2_chr1_-_57045228_57045242	0.034475	AGUGCUU	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr11_-_110167352_110167447	0.0343021	AGUGCUU	ENST00000533991.1|RDX|ENSG00000137710.10|radixin 	ENST00000528498.1|RDX|ENSG00000137710.10|radixin 	ENST00000405097.1|RDX|ENSG00000137710.10|radixin 	ENST00000528900.1|RDX|ENSG00000137710.10|radixin 	ENST00000530301.1|RDX|ENSG00000137710.10|radixin 	ENST00000343115.4|RDX|ENSG00000137710.10|radixin
hg19_v2_chr3_+_25469724_25469773	0.0335434	AGUGCUU	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chrX_-_62974941_62975031	0.0327235	AGUGCUU	ENST00000374872.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000253401.6|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000374870.4|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chr2_-_68694390_68694434	0.0324804	AGUGCUU	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr13_+_49550015_49550070	0.0320908	AGUGCUU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr6_-_89827720_89827805	0.0319097	AGUGCUU	ENST00000452027.2|SRSF12|ENSG00000154548.8|serine/arginine-rich splicing factor 12
hg19_v2_chr1_+_178062855_178062903	0.0314935	AGUGCUU	ENST00000448150.3|RASAL2|ENSG00000075391.12|RAS protein activator like 2
hg19_v2_chr10_-_75910789_75910821	0.0311461	AGUGCUU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr20_+_60718785_60718853	0.0309515	AGUGCUU	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr10_+_86088381_86088436	0.0306785	AGUGCUU	ENST00000224756.8|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2 	ENST00000372088.2|CCSER2|ENSG00000107771.11|coiled-coil serine-rich protein 2
hg19_v2_chr5_+_139027877_139027918	0.0303122	AGUGCUU	ENST00000302517.3|CXXC5|ENSG00000171604.7|CXXC finger protein 5
hg19_v2_chr9_-_124989804_124989865	0.0302963	AGUGCUU	ENST00000373755.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000373754.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chrX_+_41192595_41192651	0.0301232	AGUGCUU	ENST00000399959.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr7_+_90225796_90225811	0.0290328	AGUGCUU	ENST00000380050.3|CDK14|ENSG00000058091.12|cyclin-dependent kinase 14
hg19_v2_chr9_-_107690420_107690518	0.0282894	AGUGCUU	ENST00000423487.2|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374733.1|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1 	ENST00000374736.3|ABCA1|ENSG00000165029.11|ATP-binding cassette, sub-family A (ABC1), member 1
hg19_v2_chr15_-_101084881_101084925	0.028279	AGUGCUU	ENST00000284382.4|CERS3|ENSG00000154227.9|ceramide synthase 3
hg19_v2_chr13_+_28813645_28813770	0.0282634	AGUGCUU	ENST00000282391.5|PAN3|ENSG00000152520.9|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
hg19_v2_chr10_+_111967345_111967442	0.0282394	AGUGCUU	ENST00000332674.5|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein 	ENST00000453116.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr1_-_65432171_65432252	0.0281774	AGUGCUU	ENST00000342505.4|JAK1|ENSG00000162434.7|Janus kinase 1
hg19_v2_chr1_+_61547894_61547980	0.0278022	AGUGCUU	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr2_-_86948245_86948245	0.0273648	AGUGCUU	ENST00000439940.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000604011.1|RNF103-CHMP3|ENSG00000249884.4|RNF103-CHMP3 readthrough
hg19_v2_chr17_-_62658186_62658231	0.0271617	AGUGCUU	ENST00000262435.9|SMURF2|ENSG00000108854.11|SMAD specific E3 ubiquitin protein ligase 2
hg19_v2_chr22_-_38902325_38902347	0.026653	AGUGCUU	ENST00000396821.3|DDX17|ENSG00000100201.14|DEAD (Asp-Glu-Ala-Asp) box helicase 17 	ENST00000381633.3|DDX17|ENSG00000100201.14|DEAD (Asp-Glu-Ala-Asp) box helicase 17
hg19_v2_chr8_+_102504651_102504683	0.0265593	AGUGCUU	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr2_-_164592497_164592573	0.0260476	AGUGCUU	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr13_-_52027134_52027343	0.0258056	AGUGCUU	ENST00000311234.4|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000425000.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000463928.1|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000442263.3|INTS6|ENSG00000102786.10|integrator complex subunit 6 	ENST00000398119.2|INTS6|ENSG00000102786.10|integrator complex subunit 6
hg19_v2_chr17_+_46125707_46125746	0.0255519	AGUGCUU	ENST00000584137.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000362042.3|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000585291.1|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1 	ENST00000357480.5|NFE2L1|ENSG00000082641.11|nuclear factor, erythroid 2-like 1
hg19_v2_chr5_-_32313019_32313081	0.0254042	AGUGCUU	ENST00000280285.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12 	ENST00000264934.5|MTMR12|ENSG00000150712.6|myotubularin related protein 12
hg19_v2_chr1_-_235491462_235491534	0.0253208	AGUGCUU	ENST00000418304.1|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000264183.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like) 	ENST00000349213.3|ARID4B|ENSG00000054267.16|AT rich interactive domain 4B (RBP1-like)
hg19_v2_chr14_+_35515598_35515637	0.0246519	AGUGCUU	ENST00000280987.4|FAM177A1|ENSG00000151327.8|family with sequence similarity 177, member A1
hg19_v2_chr22_-_41252962_41253026	0.0246277	AGUGCUU	ENST00000216218.3|ST13|ENSG00000100380.8|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)
hg19_v2_chr3_-_125094093_125094198	0.0244661	AGUGCUU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr3_-_69435224_69435280	0.0242083	AGUGCUU	ENST00000398540.3|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr10_-_61666267_61666414	0.0242078	AGUGCUU	ENST00000263102.6|CCDC6|ENSG00000108091.10|coiled-coil domain containing 6
hg19_v2_chr5_+_170814803_170814885	0.0240518	AGUGCUU	ENST00000521672.1|NPM1|ENSG00000181163.9|nucleophosmin (nucleolar phosphoprotein B23, numatrin) 	ENST00000351986.6|NPM1|ENSG00000181163.9|nucleophosmin (nucleolar phosphoprotein B23, numatrin) 	ENST00000393820.2|NPM1|ENSG00000181163.9|nucleophosmin (nucleolar phosphoprotein B23, numatrin) 	ENST00000523622.1|NPM1|ENSG00000181163.9|nucleophosmin (nucleolar phosphoprotein B23, numatrin)
hg19_v2_chr7_-_26240357_26240377	0.0237459	AGUGCUU	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr17_+_68165657_68165688	0.0234201	AGUGCUU	ENST00000243457.3|KCNJ2|ENSG00000123700.4|potassium inwardly-rectifying channel, subfamily J, member 2
hg19_v2_chr1_+_87380299_87380475	0.0233906	AGUGCUU	ENST00000370551.4|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1 	ENST00000370550.5|HS2ST1|ENSG00000153936.12|heparan sulfate 2-O-sulfotransferase 1
hg19_v2_chr21_-_27542972_27543138	0.0231947	AGUGCUU	ENST00000346798.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000439274.2|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000354192.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000348990.5|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000357903.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000358918.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein 	ENST00000359726.3|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr17_-_35969409_35969544	0.0215991	AGUGCUU	ENST00000394378.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585472.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000591288.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000502449.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000345615.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000346661.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585689.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000339208.6|SYNRG|ENSG00000006114.11|synergin, gamma
hg19_v2_chr14_-_75593708_75593783	0.0214871	AGUGCUU	ENST00000557673.1|NEK9|ENSG00000119638.8|NIMA-related kinase 9 	ENST00000238616.5|NEK9|ENSG00000119638.8|NIMA-related kinase 9
hg19_v2_chr4_-_153601136_153601317	0.0214523	AGUGCUU	ENST00000504064.1|TMEM154|ENSG00000170006.7|transmembrane protein 154 	ENST00000304385.3|TMEM154|ENSG00000170006.7|transmembrane protein 154
hg19_v2_chr10_+_85899196_85899273	0.020964	AGUGCUU	ENST00000372134.3|GHITM|ENSG00000165678.15|growth hormone inducible transmembrane protein
hg19_v2_chr12_+_19592602_19592648	0.0209306	AGUGCUU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chr7_+_129074266_129074306	0.0206226	AGUGCUU	ENST00000249344.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2 	ENST00000435494.2|STRIP2|ENSG00000128578.5|striatin interacting protein 2
hg19_v2_chr2_+_198365122_198365137	0.0205941	AGUGCUU	ENST00000604458.1|HSPE1-MOB4|ENSG00000270757.1|HSPE1-MOB4 readthrough
hg19_v2_chr1_+_33207381_33207486	0.0205215	AGUGCUU	ENST00000401073.2|KIAA1522|ENSG00000162522.6|KIAA1522
hg19_v2_chr2_+_110371905_110371950	0.0205159	AGUGCUU	ENST00000356454.3|SOWAHC|ENSG00000198142.3|sosondowah ankyrin repeat domain family member C
hg19_v2_chr6_-_33168391_33168465	0.0201982	AGUGCUU	ENST00000374685.4|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000413614.2|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000374680.3|RXRB|ENSG00000204231.6|retinoid X receptor, beta
hg19_v2_chrX_+_70586082_70586114	0.0200536	AGUGCUU	ENST00000373790.4|TAF1|ENSG00000147133.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 	ENST00000449580.1|TAF1|ENSG00000147133.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 	ENST00000423759.1|TAF1|ENSG00000147133.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
hg19_v2_chr12_+_111471828_111471975	0.0195753	AGUGCUU	ENST00000261726.6|CUX2|ENSG00000111249.9|cut-like homeobox 2
hg19_v2_chr16_-_66730583_66730689	0.0186115	AGUGCUU	ENST00000330687.4|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000394106.2|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000563952.1|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4
hg19_v2_chr10_+_126630692_126630692	0.0184597	AGUGCUU	ENST00000359653.4|ZRANB1|ENSG00000019995.6|zinc finger, RAN-binding domain containing 1
hg19_v2_chr6_-_108395907_108395971	0.0183979	AGUGCUU	ENST00000193322.3|OSTM1|ENSG00000081087.10|osteopetrosis associated transmembrane protein 1
hg19_v2_chr1_+_160370344_160370406	0.0178557	AGUGCUU	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr9_+_108210279_108210435	0.0175217	AGUGCUU	ENST00000374716.4|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000374710.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000481272.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000484973.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000394926.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000539376.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like
hg19_v2_chr9_-_110251836_110251927	0.017389	AGUGCUU	ENST00000374672.4|KLF4|ENSG00000136826.10|Kruppel-like factor 4 (gut)
hg19_v2_chr1_+_178694300_178694346	0.0172972	AGUGCUU	ENST00000367635.3|RALGPS2|ENSG00000116191.13|Ral GEF with PH domain and SH3 binding motif 2
hg19_v2_chr16_-_19533404_19533467	0.0170154	AGUGCUU	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr13_+_97874574_97874609	0.0170124	AGUGCUU	ENST00000343600.4|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000345429.6|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2 	ENST00000376673.3|MBNL2|ENSG00000139793.14|muscleblind-like splicing regulator 2
hg19_v2_chr10_-_61122220_61122358	0.0168326	AGUGCUU	ENST00000422313.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000435852.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000442566.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373868.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000277705.6|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373867.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000419214.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr11_+_122526383_122526406	0.0160421	AGUGCUU	ENST00000284273.5|UBASH3B|ENSG00000154127.5|ubiquitin associated and SH3 domain containing B
hg19_v2_chr1_+_110036699_110036727	0.0160005	AGUGCUU	ENST00000496961.1|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1 	ENST00000533024.1|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1 	ENST00000310611.4|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1 	ENST00000527072.1|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1 	ENST00000420578.2|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1 	ENST00000528785.1|CYB561D1|ENSG00000174151.10|cytochrome b561 family, member D1
hg19_v2_chr12_+_45609893_45609909	0.0151196	AGUGCUU	ENST00000320560.8|ANO6|ENSG00000177119.11|anoctamin 6
hg19_v2_chr6_+_119215308_119215391	0.0151116	AGUGCUU	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr2_+_9346892_9346948	0.0148459	AGUGCUU	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr4_+_79697495_79697538	0.01473	AGUGCUU	ENST00000502871.1|BMP2K|ENSG00000138756.13|BMP2 inducible kinase 	ENST00000335016.5|BMP2K|ENSG00000138756.13|BMP2 inducible kinase
hg19_v2_chr20_+_9494987_9495027	0.0147259	AGUGCUU	ENST00000427562.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5 	ENST00000246070.2|LAMP5|ENSG00000125869.5|lysosomal-associated membrane protein family, member 5
hg19_v2_chr2_-_218808771_218808851	0.0144268	AGUGCUU	ENST00000449814.1|TNS1|ENSG00000079308.12|tensin 1 	ENST00000171887.4|TNS1|ENSG00000079308.12|tensin 1
hg19_v2_chr15_-_45480153_45480171	0.0142634	AGUGCUU	ENST00000560471.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F 	ENST00000560540.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F
hg19_v2_chr13_-_100624012_100624163	0.0139791	AGUGCUU	ENST00000267294.4|ZIC5|ENSG00000139800.8|Zic family member 5
hg19_v2_chr15_+_84322827_84322861	0.0132403	AGUGCUU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chr1_-_53793584_53793719	0.0130847	AGUGCUU	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr17_+_4981535_4981551	0.0128029	AGUGCUU	ENST00000318833.3|ZFP3|ENSG00000180787.5|ZFP3 zinc finger protein
hg19_v2_chr1_+_7831323_7831414	0.0119453	AGUGCUU	ENST00000054666.6|VAMP3|ENSG00000049245.8|vesicle-associated membrane protein 3
hg19_v2_chr12_-_123011536_123011547	0.0118737	AGUGCUU	ENST00000331738.7|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2 	ENST00000354654.2|RSRC2|ENSG00000111011.13|arginine/serine-rich coiled-coil 2
hg19_v2_chr2_+_220110177_220110262	0.0113586	AGUGCUU	ENST00000409638.3|STK16|ENSG00000115661.9|serine/threonine kinase 16 	ENST00000396738.2|STK16|ENSG00000115661.9|serine/threonine kinase 16 	ENST00000409516.3|STK16|ENSG00000115661.9|serine/threonine kinase 16
hg19_v2_chr15_+_69706585_69706641	0.0108573	AGUGCUU	ENST00000559279.1|KIF23|ENSG00000137807.9|kinesin family member 23 	ENST00000395392.2|KIF23|ENSG00000137807.9|kinesin family member 23
hg19_v2_chr3_-_169899504_169899542	0.0105499	AGUGCUU	ENST00000474275.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000484931.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000494943.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000497658.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000465896.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000475729.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000495893.2|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000481639.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000467570.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000466189.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila)
hg19_v2_chr1_-_150552006_150552093	0.0104804	AGUGCUU	ENST00000307940.3|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related) 	ENST00000369026.2|MCL1|ENSG00000143384.8|myeloid cell leukemia sequence 1 (BCL2-related)
hg19_v2_chr18_+_21269404_21269427	0.0102466	AGUGCUU	ENST00000313654.9|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr6_+_158244223_158244301	0.0101697	AGUGCUU	ENST00000392185.3|SNX9|ENSG00000130340.10|sorting nexin 9
hg19_v2_chr17_+_56270084_56270098	0.00987835	AGUGCUU	ENST00000225371.5|EPX|ENSG00000121053.5|eosinophil peroxidase
hg19_v2_chr2_+_203499901_203499911	0.00900878	AGUGCUU	ENST00000303116.6|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B 	ENST00000392238.2|FAM117B|ENSG00000138439.10|family with sequence similarity 117, member B
hg19_v2_chr7_+_104654623_104654669	0.00846914	AGUGCUU	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr20_+_8112824_8112925	0.00831215	AGUGCUU	ENST00000378641.3|PLCB1|ENSG00000182621.12|phospholipase C, beta 1 (phosphoinositide-specific)
hg19_v2_chr1_-_155532484_155532605	0.00675399	AGUGCUU	ENST00000368346.3|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila) 	ENST00000548830.1|ASH1L|ENSG00000116539.6|ash1 (absent, small, or homeotic)-like (Drosophila)
hg19_v2_chr12_-_96184533_96184549	0.00660022	AGUGCUU	ENST00000343702.4|NTN4|ENSG00000074527.7|netrin 4 	ENST00000344911.4|NTN4|ENSG00000074527.7|netrin 4
hg19_v2_chr12_+_13197218_13197293	0.00630278	AGUGCUU	ENST00000197268.8|KIAA1467|ENSG00000084444.9|KIAA1467
hg19_v2_chr11_+_61520075_61520136	0.00611895	AGUGCUU	ENST00000278836.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr1_-_153895377_153895465	0.00498853	AGUGCUU	ENST00000368655.4|GATAD2B|ENSG00000143614.7|GATA zinc finger domain containing 2B
hg19_v2_chr14_+_57046500_57046529	0.00448215	AGUGCUU	ENST00000261556.6|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr11_+_69455855_69455974	0.00372689	AGUGCUU	ENST00000227507.2|CCND1|ENSG00000110092.3|cyclin D1 	ENST00000536559.1|CCND1|ENSG00000110092.3|cyclin D1
hg19_v2_chrX_+_108780062_108780105	0.00328686	AGUGCUU	ENST00000372106.1|NXT2|ENSG00000101888.7|nuclear transport factor 2-like export factor 2
hg19_v2_chr4_-_114900831_114900857	0.00321186	AGUGCUU	ENST00000315366.7|ARSJ|ENSG00000180801.11|arylsulfatase family, member J
hg19_v2_chrX_-_53449593_53449677	0.00219754	AGUGCUU	ENST00000375340.6|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A 	ENST00000322213.4|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A
hg19_v2_chr2_-_69870835_69870853	0.00206467	AGUGCUU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr1_+_153631130_153631217	0.00198274	AGUGCUU	ENST00000368685.5|SNAPIN|ENSG00000143553.6|SNAP-associated protein
hg19_v2_chr1_-_226129083_226129123	0.0017275	AGUGCUU	ENST00000420304.2|LEFTY2|ENSG00000143768.7|left-right determination factor 2
hg19_v2_chr6_-_157744531_157744633	0.00172733	AGUGCUU	ENST00000400788.4|TMEM242|ENSG00000215712.6|transmembrane protein 242 	ENST00000367144.4|TMEM242|ENSG00000215712.6|transmembrane protein 242
hg19_v2_chr11_-_102962929_102962944	0.00154884	AGUGCUU	ENST00000260247.5|DCUN1D5|ENSG00000137692.7|DCN1, defective in cullin neddylation 1, domain containing 5
hg19_v2_chr12_+_70636765_70636817	0.00138413	AGUGCUU	ENST00000552231.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000229195.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000547780.1|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2 	ENST00000418359.3|CNOT2|ENSG00000111596.7|CCR4-NOT transcription complex, subunit 2
hg19_v2_chr3_-_179754706_179754732	0.00108072	AGUGCUU	ENST00000465751.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like 	ENST00000467460.1|PEX5L|ENSG00000114757.14|peroxisomal biogenesis factor 5-like
hg19_v2_chr15_-_91537723_91537804	0.000653	AGUGCUU	ENST00000394249.3|PRC1|ENSG00000198901.9|protein regulator of cytokinesis 1 	ENST00000559811.1|PRC1|ENSG00000198901.9|protein regulator of cytokinesis 1 	ENST00000442656.2|PRC1|ENSG00000198901.9|protein regulator of cytokinesis 1 	ENST00000557905.1|PRC1|ENSG00000198901.9|protein regulator of cytokinesis 1 	ENST00000361919.3|PRC1|ENSG00000198901.9|protein regulator of cytokinesis 1
hg19_v2_chr1_+_78245303_78245351	0.000614839	AGUGCUU	ENST00000370791.3|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A 	ENST00000443751.2|FAM73A|ENSG00000180488.10|family with sequence similarity 73, member A
hg19_v2_chr17_-_38804061_38804112	0.000315832	AGUGCUU	ENST00000474246.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000377808.4|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000578044.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580419.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000400122.3|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000580654.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000577721.1|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000478349.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 	ENST00000431889.2|SMARCE1|ENSG00000073584.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
