hg19_v2_chr18_-_19180681_19180711	0.140342	ACUGCAU	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr17_+_72733350_72733373	0.116628	ACUGCAU	ENST00000392613.5|RAB37|ENSG00000172794.15|RAB37, member RAS oncogene family 	ENST00000392612.3|RAB37|ENSG00000172794.15|RAB37, member RAS oncogene family 	ENST00000392610.1|RAB37|ENSG00000172794.15|RAB37, member RAS oncogene family
hg19_v2_chr8_+_104831472_104831510	0.105408	ACUGCAU	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr1_-_70671216_70671303	0.105225	ACUGCAU	ENST00000370952.3|LRRC40|ENSG00000066557.5|leucine rich repeat containing 40
hg19_v2_chr4_-_76598296_76598318	0.103819	ACUGCAU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr3_-_101232019_101232085	0.0993159	ACUGCAU	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr12_+_69004619_69004699	0.0924563	ACUGCAU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr2_+_39893043_39893118	0.0868371	ACUGCAU	ENST00000281961.2|TMEM178A|ENSG00000152154.6|transmembrane protein 178A
hg19_v2_chr7_+_36429409_36429420	0.0807057	ACUGCAU	ENST00000265748.2|ANLN|ENSG00000011426.6|anillin, actin binding protein
hg19_v2_chr12_+_67663056_67663067	0.0804231	ACUGCAU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr10_-_98346801_98346812	0.0717342	ACUGCAU	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr6_-_45345597_45345721	0.0711626	ACUGCAU	ENST00000371460.1|SUPT3H|ENSG00000196284.9|suppressor of Ty 3 homolog (S. cerevisiae) 	ENST00000371459.1|SUPT3H|ENSG00000196284.9|suppressor of Ty 3 homolog (S. cerevisiae)
hg19_v2_chr5_-_56247935_56247959	0.0694054	ACUGCAU	ENST00000381199.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381226.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3 	ENST00000381213.3|MIER3|ENSG00000155545.15|mesoderm induction early response 1, family member 3
hg19_v2_chrX_-_135056216_135056227	0.0664039	ACUGCAU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr3_-_120461378_120461389	0.0632648	ACUGCAU	ENST00000273375.3|RABL3|ENSG00000144840.4|RAB, member of RAS oncogene family-like 3
hg19_v2_chr2_+_109335929_109336002	0.0584306	ACUGCAU	ENST00000283195.6|RANBP2|ENSG00000153201.11|RAN binding protein 2
hg19_v2_chr17_+_29421900_29421951	0.056931	ACUGCAU	ENST00000358273.4|NF1|ENSG00000196712.12|neurofibromin 1 	ENST00000356175.3|NF1|ENSG00000196712.12|neurofibromin 1
hg19_v2_chr13_-_30424821_30424847	0.0568983	ACUGCAU	ENST00000380680.4|UBL3|ENSG00000122042.9|ubiquitin-like 3
hg19_v2_chr16_+_12995468_12995497	0.0568754	ACUGCAU	ENST00000424107.3|SHISA9|ENSG00000237515.6|shisa family member 9 	ENST00000558583.1|SHISA9|ENSG00000237515.6|shisa family member 9 	ENST00000558318.1|SHISA9|ENSG00000237515.6|shisa family member 9
hg19_v2_chr1_-_244013384_244013430	0.053483	ACUGCAU	ENST00000366539.1|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3
hg19_v2_chr2_+_228336849_228336904	0.0532071	ACUGCAU	ENST00000409979.2|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1 	ENST00000310078.8|AGFG1|ENSG00000173744.13|ArfGAP with FG repeats 1
hg19_v2_chr11_-_85780086_85780161	0.0515955	ACUGCAU	ENST00000532317.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000528256.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein 	ENST00000526033.1|PICALM|ENSG00000073921.13|phosphatidylinositol binding clathrin assembly protein
hg19_v2_chr1_-_244615425_244615441	0.0506366	ACUGCAU	ENST00000366535.3|ADSS|ENSG00000035687.9|adenylosuccinate synthase
hg19_v2_chr5_+_61602055_61602083	0.0487919	ACUGCAU	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr4_+_144106080_144106144	0.0477999	ACUGCAU	ENST00000307017.4|USP38|ENSG00000170185.5|ubiquitin specific peptidase 38
hg19_v2_chr17_-_60005365_60005377	0.0474609	ACUGCAU	ENST00000444766.3|INTS2|ENSG00000108506.7|integrator complex subunit 2
hg19_v2_chr5_-_82373260_82373315	0.0473879	ACUGCAU	ENST00000502346.1|TMEM167A|ENSG00000174695.5|transmembrane protein 167A
hg19_v2_chr8_-_103876965_103877012	0.0468574	ACUGCAU	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chr18_-_18691739_18691812	0.0466198	ACUGCAU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr15_+_44829255_44829331	0.0466078	ACUGCAU	ENST00000261868.5|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J 	ENST00000424492.3|EIF3J|ENSG00000104131.8|eukaryotic translation initiation factor 3, subunit J
hg19_v2_chr10_+_98592009_98592061	0.0451883	ACUGCAU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr6_+_64281906_64281922	0.0442717	ACUGCAU	ENST00000370651.3|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr17_-_60142609_60142657	0.0442544	ACUGCAU	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr4_-_23891693_23891706	0.0442056	ACUGCAU	ENST00000264867.2|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chrX_-_131352152_131352204	0.041188	ACUGCAU	ENST00000342983.2|RAP2C|ENSG00000123728.5|RAP2C, member of RAS oncogene family
hg19_v2_chr3_+_40351169_40351206	0.0410267	ACUGCAU	ENST00000232905.3|EIF1B|ENSG00000114784.3|eukaryotic translation initiation factor 1B
hg19_v2_chr10_+_89622870_89622870	0.0406711	ACUGCAU	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr12_-_42538657_42538720	0.0399248	ACUGCAU	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr11_-_67980744_67980882	0.0382823	ACUGCAU	ENST00000401547.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000453170.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000304363.4|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr2_+_28974668_28974729	0.0371661	ACUGCAU	ENST00000296122.6|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme 	ENST00000395366.2|PPP1CB|ENSG00000213639.5|protein phosphatase 1, catalytic subunit, beta isozyme
hg19_v2_chr5_+_112312416_112312440	0.0360147	ACUGCAU	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr1_+_244816237_244816357	0.0349809	ACUGCAU	ENST00000302550.11|DESI2|ENSG00000121644.14|desumoylating isopeptidase 2
hg19_v2_chr13_-_21476900_21476949	0.0346765	ACUGCAU	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr4_+_77870856_77870919	0.0344145	ACUGCAU	ENST00000264893.6|SEPT11|ENSG00000138758.7|septin 11 	ENST00000502584.1|SEPT11|ENSG00000138758.7|septin 11 	ENST00000510641.1|SEPT11|ENSG00000138758.7|septin 11
hg19_v2_chr16_-_79634595_79634620	0.0342091	ACUGCAU	ENST00000326043.4|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 	ENST00000393350.1|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
hg19_v2_chr12_-_93323013_93323112	0.0337647	ACUGCAU	ENST00000322349.8|EEA1|ENSG00000102189.12|early endosome antigen 1
hg19_v2_chr5_+_36876833_36876894	0.0322462	ACUGCAU	ENST00000282516.8|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila) 	ENST00000448238.2|NIPBL|ENSG00000164190.12|Nipped-B homolog (Drosophila)
hg19_v2_chr10_+_23728198_23728231	0.0315139	ACUGCAU	ENST00000376495.3|OTUD1|ENSG00000165312.5|OTU domain containing 1
hg19_v2_chr2_+_235860616_235860645	0.0301267	ACUGCAU	ENST00000392011.2|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr2_+_26568965_26569025	0.0294944	ACUGCAU	ENST00000260585.7|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) 	ENST00000447170.1|EPT1|ENSG00000138018.13|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
hg19_v2_chr12_-_76478686_76478813	0.0292861	ACUGCAU	ENST00000261182.8|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr4_-_42659102_42659161	0.0281092	ACUGCAU	ENST00000264449.10|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000510289.1|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENST00000381668.5|ATP8A1|ENSG00000124406.12|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
hg19_v2_chr3_-_160283348_160283376	0.0271307	ACUGCAU	ENST00000334256.4|KPNA4|ENSG00000186432.4|karyopherin alpha 4 (importin alpha 3)
hg19_v2_chr1_+_25071848_25071944	0.0271062	ACUGCAU	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr20_+_43514315_43514319	0.0266565	ACUGCAU	ENST00000353703.4|YWHAB|ENSG00000166913.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta
hg19_v2_chrX_-_73834449_73834481	0.0264898	ACUGCAU	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr1_+_93544791_93544807	0.0263269	ACUGCAU	ENST00000545708.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000540243.1|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2 	ENST00000370298.4|MTF2|ENSG00000143033.13|metal response element binding transcription factor 2
hg19_v2_chr9_-_6007787_6007957	0.0248058	ACUGCAU	ENST00000399933.3|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000381461.2|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000513355.2|KIAA2026|ENSG00000183354.7|KIAA2026
hg19_v2_chr17_-_18266797_18266817	0.0241802	ACUGCAU	ENST00000316694.3|SHMT1|ENSG00000176974.13|serine hydroxymethyltransferase 1 (soluble) 	ENST00000539052.1|SHMT1|ENSG00000176974.13|serine hydroxymethyltransferase 1 (soluble)
hg19_v2_chrX_-_134049262_134049297	0.0239389	ACUGCAU	ENST00000370783.3|MOSPD1|ENSG00000101928.8|motile sperm domain containing 1
hg19_v2_chr1_-_169455169_169455241	0.0233766	ACUGCAU	ENST00000367804.4|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2 	ENST00000236137.5|SLC19A2|ENSG00000117479.8|solute carrier family 19 (thiamine transporter), member 2
hg19_v2_chr6_+_111195973_111195994	0.0232852	ACUGCAU	ENST00000368885.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368882.3|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000451850.2|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1 	ENST00000368877.5|AMD1|ENSG00000123505.10|adenosylmethionine decarboxylase 1
hg19_v2_chr4_+_144257915_144258009	0.0231701	ACUGCAU	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr5_+_134181625_134181713	0.0229457	ACUGCAU	ENST00000394976.3|C5orf24|ENSG00000181904.8|chromosome 5 open reading frame 24
hg19_v2_chr12_+_104359576_104359601	0.02272	ACUGCAU	ENST00000392872.3|TDG|ENSG00000139372.10|thymine-DNA glycosylase 	ENST00000436021.2|TDG|ENSG00000139372.10|thymine-DNA glycosylase
hg19_v2_chr13_+_27131887_27131899	0.0223375	ACUGCAU	ENST00000335327.5|WASF3|ENSG00000132970.8|WAS protein family, member 3
hg19_v2_chr10_-_88281494_88281572	0.0222828	ACUGCAU	ENST00000298767.5|WAPAL|ENSG00000062650.13|wings apart-like homolog (Drosophila)
hg19_v2_chr7_-_122526799_122526818	0.0221539	ACUGCAU	ENST00000334010.7|CADPS2|ENSG00000081803.11|Ca++-dependent secretion activator 2 	ENST00000313070.7|CADPS2|ENSG00000081803.11|Ca++-dependent secretion activator 2
hg19_v2_chr10_-_62149433_62149488	0.0219861	ACUGCAU	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr9_-_86432547_86432699	0.0218966	ACUGCAU	ENST00000376365.3|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1 	ENST00000376371.2|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1
hg19_v2_chr2_+_139259324_139259389	0.021362	ACUGCAU	ENST00000280098.4|SPOPL|ENSG00000144228.4|speckle-type POZ protein-like
hg19_v2_chr15_-_101792137_101792159	0.0207054	ACUGCAU	ENST00000254190.3|CHSY1|ENSG00000131873.5|chondroitin sulfate synthase 1
hg19_v2_chr4_+_57774042_57774114	0.0203865	ACUGCAU	ENST00000309042.7|REST|ENSG00000084093.11|RE1-silencing transcription factor
hg19_v2_chr2_+_169312350_169312372	0.0203838	ACUGCAU	ENST00000305747.6|CERS6|ENSG00000172292.10|ceramide synthase 6
hg19_v2_chr14_+_57857262_57857334	0.020241	ACUGCAU	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr9_+_129677039_129677119	0.0200513	ACUGCAU	ENST00000259351.5|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000424082.2|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000394022.3|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000394011.3|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000319107.4|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1
hg19_v2_chr3_+_155588300_155588369	0.0196061	ACUGCAU	ENST00000496455.2|GMPS|ENSG00000163655.11|guanine monphosphate synthase
hg19_v2_chr10_-_27443155_27443288	0.0195668	ACUGCAU	ENST00000427324.1|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase 	ENST00000326799.3|YME1L1|ENSG00000136758.14|YME1-like 1 ATPase
hg19_v2_chr17_+_30264014_30264086	0.0192387	ACUGCAU	ENST00000322652.5|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit 	ENST00000580398.1|SUZ12|ENSG00000178691.6|SUZ12 polycomb repressive complex 2 subunit
hg19_v2_chr5_-_131132658_131132719	0.018781	ACUGCAU	ENST00000514667.1|CTC-432M15.3|ENSG00000273217.1|Folliculin-interacting protein 1  	ENST00000511848.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000510461.1|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr3_-_18466787_18466861	0.0186286	ACUGCAU	ENST00000338745.6|SATB1|ENSG00000182568.12|SATB homeobox 1 	ENST00000450898.1|SATB1|ENSG00000182568.12|SATB homeobox 1
hg19_v2_chr10_-_5855350_5855512	0.0178817	ACUGCAU	ENST00000456041.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380181.3|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000418688.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380132.4|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000609712.1|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2 	ENST00000380191.4|GDI2|ENSG00000057608.12|GDP dissociation inhibitor 2
hg19_v2_chr3_+_186501336_186501386	0.0176994	ACUGCAU	ENST00000323963.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000440191.2|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2 	ENST00000356531.5|EIF4A2|ENSG00000156976.10|eukaryotic translation initiation factor 4A2
hg19_v2_chr19_+_41768401_41768437	0.0175887	ACUGCAU	ENST00000352456.3|HNRNPUL1|ENSG00000105323.12|heterogeneous nuclear ribonucleoprotein U-like 1 	ENST00000595018.1|HNRNPUL1|ENSG00000105323.12|heterogeneous nuclear ribonucleoprotein U-like 1 	ENST00000597725.1|HNRNPUL1|ENSG00000105323.12|heterogeneous nuclear ribonucleoprotein U-like 1
hg19_v2_chr4_-_125633876_125633897	0.0171179	ACUGCAU	ENST00000504087.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50 	ENST00000515641.1|ANKRD50|ENSG00000151458.7|ankyrin repeat domain 50
hg19_v2_chrX_+_107069063_107069123	0.0165376	ACUGCAU	ENST00000262843.6|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr9_+_110045537_110045572	0.0164592	ACUGCAU	ENST00000358015.3|RAD23B|ENSG00000119318.8|RAD23 homolog B (S. cerevisiae)
hg19_v2_chrX_+_12993202_12993239	0.0163495	ACUGCAU	ENST00000451311.2|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked 	ENST00000380636.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr12_+_19592602_19592648	0.0157469	ACUGCAU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chr2_+_208576355_208576475	0.015572	ACUGCAU	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr11_+_107461948_107462009	0.0152022	ACUGCAU	ENST00000265840.7|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1 	ENST00000443271.2|ELMOD1|ENSG00000110675.8|ELMO/CED-12 domain containing 1
hg19_v2_chr12_-_25403737_25403881	0.0148493	ACUGCAU	ENST00000256078.4|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000556131.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000311936.3|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog 	ENST00000557334.1|KRAS|ENSG00000133703.7|Kirsten rat sarcoma viral oncogene homolog
hg19_v2_chr12_-_42632016_42632089	0.0145205	ACUGCAU	ENST00000442791.3|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000327791.4|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000534854.2|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000380788.3|YAF2|ENSG00000015153.10|YY1 associated factor 2 	ENST00000380790.4|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr2_-_29297127_29297127	0.0144785	ACUGCAU	ENST00000331664.5|C2orf71|ENSG00000179270.6|chromosome 2 open reading frame 71
hg19_v2_chr14_-_82000140_82000229	0.0140702	ACUGCAU	ENST00000555824.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000557372.1|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans) 	ENST00000336735.4|SEL1L|ENSG00000071537.9|sel-1 suppressor of lin-12-like (C. elegans)
hg19_v2_chr5_-_78809950_78810040	0.0137156	ACUGCAU	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr17_-_58603568_58603610	0.0132738	ACUGCAU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr7_+_30174426_30174441	0.0132255	ACUGCAU	ENST00000324453.8|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr3_-_71774516_71774587	0.01316	ACUGCAU	ENST00000425534.3|EIF4E3|ENSG00000163412.8|eukaryotic translation initiation factor 4E family member 3
hg19_v2_chr13_+_42622781_42622889	0.0129506	ACUGCAU	ENST00000337343.4|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000261491.5|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000379274.2|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta
hg19_v2_chr15_+_57210818_57210930	0.0127348	ACUGCAU	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr1_+_151584544_151584558	0.0127271	ACUGCAU	ENST00000458013.2|SNX27|ENSG00000143376.8|sorting nexin family member 27 	ENST00000368843.3|SNX27|ENSG00000143376.8|sorting nexin family member 27
hg19_v2_chr17_+_38219063_38219154	0.0125089	ACUGCAU	ENST00000584985.1|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000264637.4|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha 	ENST00000450525.2|THRA|ENSG00000126351.8|thyroid hormone receptor, alpha
hg19_v2_chr5_-_137911049_137911133	0.0124312	ACUGCAU	ENST00000297185.3|HSPA9|ENSG00000113013.8|heat shock 70kDa protein 9 (mortalin)
hg19_v2_chr9_-_126030817_126030906	0.0123979	ACUGCAU	ENST00000348403.5|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000447404.2|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000360998.3|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein
hg19_v2_chr2_-_37193606_37193633	0.0123828	ACUGCAU	ENST00000379213.2|STRN|ENSG00000115808.7|striatin, calmodulin binding protein 	ENST00000263918.4|STRN|ENSG00000115808.7|striatin, calmodulin binding protein
hg19_v2_chr21_-_36260980_36261011	0.0122772	ACUGCAU	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr7_+_30323923_30324060	0.0121786	ACUGCAU	ENST00000323037.4|ZNRF2|ENSG00000180233.9|zinc and ring finger 2
hg19_v2_chr6_-_166796461_166796496	0.0116971	ACUGCAU	ENST00000360961.6|MPC1|ENSG00000060762.14|mitochondrial pyruvate carrier 1 	ENST00000341756.6|MPC1|ENSG00000060762.14|mitochondrial pyruvate carrier 1
hg19_v2_chr9_-_15510989_15511017	0.0116435	ACUGCAU	ENST00000380715.1|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1 	ENST00000380716.4|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1 	ENST00000380738.4|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1 	ENST00000380733.4|PSIP1|ENSG00000164985.10|PC4 and SFRS1 interacting protein 1
hg19_v2_chr16_+_68771128_68771255	0.0116123	ACUGCAU	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr12_-_109125285_109125372	0.0114912	ACUGCAU	ENST00000552871.1|CORO1C|ENSG00000110880.6|coronin, actin binding protein, 1C 	ENST00000261401.3|CORO1C|ENSG00000110880.6|coronin, actin binding protein, 1C
hg19_v2_chr15_+_41709302_41709348	0.0112722	ACUGCAU	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr12_+_123237321_123237407	0.0110485	ACUGCAU	ENST00000280557.6|DENR|ENSG00000139726.6|density-regulated protein 	ENST00000455982.2|DENR|ENSG00000139726.6|density-regulated protein
hg19_v2_chr5_+_139027877_139027918	0.0109974	ACUGCAU	ENST00000302517.3|CXXC5|ENSG00000171604.7|CXXC finger protein 5
hg19_v2_chr18_+_43753974_43754019	0.0107624	ACUGCAU	ENST00000282059.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25 	ENST00000321319.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25
hg19_v2_chr16_+_22019404_22019604	0.0106265	ACUGCAU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr9_+_112810878_112810985	0.0100697	ACUGCAU	ENST00000434623.2|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000374525.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr8_-_29940628_29940723	0.0100422	ACUGCAU	ENST00000545648.1|TMEM66|ENSG00000133872.9|transmembrane protein 66 	ENST00000256255.6|TMEM66|ENSG00000133872.9|transmembrane protein 66
hg19_v2_chr13_+_50656307_50656405	0.00958887	ACUGCAU	ENST00000378180.4|DLEU1|ENSG00000176124.7|deleted in lymphocytic leukemia 1 (non-protein coding)
hg19_v2_chr2_-_219433014_219433100	0.00950035	ACUGCAU	ENST00000418019.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000454775.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000338465.5|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000415516.1|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37 	ENST00000258399.3|USP37|ENSG00000135913.6|ubiquitin specific peptidase 37
hg19_v2_chr16_-_53737795_53737850	0.00947832	ACUGCAU	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr8_+_98656336_98656535	0.009407	ACUGCAU	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr2_+_118846008_118846100	0.00903057	ACUGCAU	ENST00000245787.4|INSIG2|ENSG00000125629.10|insulin induced gene 2
hg19_v2_chr3_-_44519131_44519186	0.00884778	ACUGCAU	ENST00000425708.2|ZNF445|ENSG00000185219.11|zinc finger protein 445 	ENST00000396077.2|ZNF445|ENSG00000185219.11|zinc finger protein 445
hg19_v2_chr6_-_52926539_52926668	0.00873027	ACUGCAU	ENST00000350082.5|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase 	ENST00000356971.3|ICK|ENSG00000112144.11|intestinal cell (MAK-like) kinase
hg19_v2_chr10_-_75910789_75910821	0.00865009	ACUGCAU	ENST00000355264.4|AP3M1|ENSG00000185009.8|adaptor-related protein complex 3, mu 1 subunit
hg19_v2_chr10_+_43633914_43633935	0.00864616	ACUGCAU	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr12_-_110939870_110939937	0.00854708	ACUGCAU	ENST00000447578.2|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae) 	ENST00000546588.1|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae) 	ENST00000360579.7|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae) 	ENST00000549970.1|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae) 	ENST00000549578.1|VPS29|ENSG00000111237.14|vacuolar protein sorting 29 homolog (S. cerevisiae)
hg19_v2_chr8_+_38614807_38614851	0.00851399	ACUGCAU	ENST00000330691.6|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1 	ENST00000348567.4|TACC1|ENSG00000147526.15|transforming, acidic coiled-coil containing protein 1
hg19_v2_chr3_+_113465866_113465925	0.00846042	ACUGCAU	ENST00000273398.3|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000538620.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000496747.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000475322.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
hg19_v2_chr12_+_72233487_72233563	0.00824442	ACUGCAU	ENST00000482439.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000550746.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000491063.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000319106.8|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000485960.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000393309.3|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15
hg19_v2_chr16_+_56965960_56966072	0.00764932	ACUGCAU	ENST00000439977.2|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000344114.4|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000300302.5|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 	ENST00000379792.2|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
hg19_v2_chr6_+_45389893_45389914	0.00764876	ACUGCAU	ENST00000371432.3|RUNX2|ENSG00000124813.16|runt-related transcription factor 2
hg19_v2_chr15_-_44486632_44486664	0.00714095	ACUGCAU	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr9_-_95055956_95056004	0.00697844	ACUGCAU	ENST00000375629.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000447699.2|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000375643.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase 	ENST00000395554.3|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase
hg19_v2_chr12_-_31479045_31479074	0.00692973	ACUGCAU	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr10_-_32636106_32636150	0.00654491	ACUGCAU	ENST00000263062.8|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila) 	ENST00000319778.6|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr5_-_130970723_130970965	0.00653381	ACUGCAU	ENST00000308008.6|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000296859.6|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000507093.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000510071.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000509018.1|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6 	ENST00000307984.5|RAPGEF6|ENSG00000158987.15|Rap guanine nucleotide exchange factor (GEF) 6
hg19_v2_chr10_+_63422695_63422755	0.00637188	ACUGCAU	ENST00000330194.2|C10orf107|ENSG00000183346.6|chromosome 10 open reading frame 107 	ENST00000389639.3|C10orf107|ENSG00000183346.6|chromosome 10 open reading frame 107
hg19_v2_chr6_+_163835669_163835693	0.00635556	ACUGCAU	ENST00000453779.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000275262.7|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000392127.2|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding 	ENST00000361752.3|QKI|ENSG00000112531.12|QKI, KH domain containing, RNA binding
hg19_v2_chr9_+_112542572_112542590	0.00603301	ACUGCAU	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr6_+_108881012_108881038	0.00597113	ACUGCAU	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr16_-_80838195_80838228	0.00588771	ACUGCAU	ENST00000570137.2|CDYL2|ENSG00000166446.10|chromodomain protein, Y-like 2
hg19_v2_chr9_+_108210279_108210435	0.00567188	ACUGCAU	ENST00000374716.4|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000374710.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000481272.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000484973.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000394926.3|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like 	ENST00000539376.1|FSD1L|ENSG00000106701.7|fibronectin type III and SPRY domain containing 1-like
hg19_v2_chr3_-_53925863_53926015	0.00561849	ACUGCAU	ENST00000541726.1|SELK|ENSG00000113811.6|Selenoprotein K  	ENST00000495461.1|SELK|ENSG00000113811.6|Selenoprotein K
hg19_v2_chr2_+_181845298_181845378	0.00555117	ACUGCAU	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr21_-_43430440_43430496	0.00542217	ACUGCAU	ENST00000398505.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000310826.5|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000449949.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398499.1|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398497.2|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21 	ENST00000398511.3|ZBTB21|ENSG00000173276.9|zinc finger and BTB domain containing 21
hg19_v2_chr8_-_81787006_81787031	0.00540901	ACUGCAU	ENST00000327835.3|ZNF704|ENSG00000164684.9|zinc finger protein 704
hg19_v2_chr15_+_44719394_44719579	0.00532625	ACUGCAU	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr15_-_83621435_83621495	0.00526512	ACUGCAU	ENST00000450735.2|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000426485.1|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000399166.2|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000304231.8|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila)
hg19_v2_chr7_-_26240357_26240377	0.005227	ACUGCAU	ENST00000354667.4|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1 	ENST00000356674.7|HNRNPA2B1|ENSG00000122566.16|heterogeneous nuclear ribonucleoprotein A2/B1
hg19_v2_chr2_-_182545603_182545603	0.0051822	ACUGCAU	ENST00000295108.3|NEUROD1|ENSG00000162992.3|neuronal differentiation 1
hg19_v2_chr6_+_119215308_119215391	0.00517953	ACUGCAU	ENST00000229595.5|ASF1A|ENSG00000111875.7|anti-silencing function 1A histone chaperone
hg19_v2_chr9_-_74980113_74980163	0.00469472	ACUGCAU	ENST00000376962.5|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376960.4|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000237937.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr1_+_229406847_229406935	0.00460226	ACUGCAU	ENST00000366690.4|RAB4A|ENSG00000168118.7|RAB4A, member RAS oncogene family
hg19_v2_chr2_+_9346892_9346948	0.00456043	ACUGCAU	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr20_+_3451650_3451729	0.0043854	ACUGCAU	ENST00000262919.5|ATRN|ENSG00000088812.13|attractin
hg19_v2_chr20_-_50384864_50384943	0.00435472	ACUGCAU	ENST00000311637.5|ATP9A|ENSG00000054793.9|ATPase, class II, type 9A 	ENST00000402822.1|ATP9A|ENSG00000054793.9|ATPase, class II, type 9A
hg19_v2_chr2_+_99953816_99953894	0.00402339	ACUGCAU	ENST00000289371.6|EIF5B|ENSG00000158417.6|eukaryotic translation initiation factor 5B
hg19_v2_chr2_-_157189180_157189290	0.00398977	ACUGCAU	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr15_-_23932437_23932459	0.00393962	ACUGCAU	ENST00000331837.4|NDN|ENSG00000182636.4|necdin, melanoma antigen (MAGE) family member
hg19_v2_chr13_+_33160553_33160564	0.0038771	ACUGCAU	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr3_-_171178157_171178225	0.00385505	ACUGCAU	ENST00000465393.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000436636.2|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000369326.5|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000538048.1|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase 	ENST00000341852.6|TNIK|ENSG00000154310.12|TRAF2 and NCK interacting kinase
hg19_v2_chr10_+_114709999_114710031	0.00365487	ACUGCAU	ENST00000355995.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000545257.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000543371.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000536810.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000355717.4|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000538897.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box) 	ENST00000534894.1|TCF7L2|ENSG00000148737.11|transcription factor 7-like 2 (T-cell specific, HMG-box)
hg19_v2_chr10_-_105615164_105615323	0.00319233	ACUGCAU	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr17_+_60536002_60536040	0.0030212	ACUGCAU	ENST00000582809.1|TLK2|ENSG00000146872.13|tousled-like kinase 2
hg19_v2_chr17_+_56833184_56833249	0.00263538	ACUGCAU	ENST00000308249.2|PPM1E|ENSG00000175175.4|protein phosphatase, Mg2+/Mn2+ dependent, 1E
hg19_v2_chr10_+_111967345_111967442	0.00237059	ACUGCAU	ENST00000332674.5|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein 	ENST00000453116.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr13_+_39261224_39261266	0.0021973	ACUGCAU	ENST00000280481.7|FREM2|ENSG00000150893.9|FRAS1 related extracellular matrix protein 2
hg19_v2_chr7_+_29234028_29234043	0.00218853	ACUGCAU	ENST00000222792.6|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr2_+_196521458_196521491	0.00186839	ACUGCAU	ENST00000409086.3|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr16_+_81069433_81069462	0.00170441	ACUGCAU	ENST00000299575.4|ATMIN|ENSG00000166454.5|ATM interactor
hg19_v2_chrX_+_9983602_9983602	0.00148633	ACUGCAU	ENST00000380861.4|WWC3|ENSG00000047644.13|WWC family member 3
hg19_v2_chr3_-_48342795_48342913	0.00143563	ACUGCAU	ENST00000452211.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000447724.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000415053.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000425930.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000421967.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000426723.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000450160.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000456495.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000435684.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000447314.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000415644.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6 	ENST00000442597.1|NME6|ENSG00000172113.4|NME/NM23 nucleoside diphosphate kinase 6
hg19_v2_chr2_-_69870835_69870853	0.00133921	ACUGCAU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr11_+_125462690_125462768	0.000504444	ACUGCAU	ENST00000392708.4|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 	ENST00000529196.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic) 	ENST00000531491.1|STT3A|ENSG00000134910.8|STT3A, subunit of the oligosaccharyltransferase complex (catalytic)
hg19_v2_chr22_-_29075853_29075853	0.00047445	ACUGCAU	ENST00000397906.2|TTC28|ENSG00000100154.10|tetratricopeptide repeat domain 28
hg19_v2_chr1_-_24306798_24306828	0.000331602	ACUGCAU	ENST00000374452.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000492112.2|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000343255.5|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10 	ENST00000344989.6|SRSF10|ENSG00000188529.10|serine/arginine-rich splicing factor 10
hg19_v2_chrX_-_112084043_112084071	0.000254146	ACUGCAU	ENST00000304758.1|AMOT|ENSG00000126016.9|angiomotin
hg19_v2_chr18_-_74207146_74207183	0.000175193	ACUGCAU	ENST00000443185.2|ZNF516|ENSG00000101493.6|zinc finger protein 516
