hg19_v2_chr3_-_123603137_123603203	0.134214	AAUGCCC	ENST00000360304.3|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000359169.1|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000346322.5|MYLK|ENSG00000065534.14|myosin light chain kinase 	ENST00000360772.3|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr3_+_23986748_23986761	0.13117	AAUGCCC	ENST00000312521.4|NR1D2|ENSG00000174738.8|nuclear receptor subfamily 1, group D, member 2
hg19_v2_chr2_+_46926048_46926095	0.0942301	AAUGCCC	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr1_-_46598284_46598356	0.0796198	AAUGCCC	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr11_+_34642656_34642682	0.0742692	AAUGCCC	ENST00000257831.3|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000450654.2|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr13_-_46425865_46425902	0.0741055	AAUGCCC	ENST00000400405.2|SIAH3|ENSG00000215475.3|siah E3 ubiquitin protein ligase family member 3
hg19_v2_chr10_-_98273668_98273688	0.0738373	AAUGCCC	ENST00000357947.3|TLL2|ENSG00000095587.8|tolloid-like 2
hg19_v2_chr5_-_142065612_142065638	0.0695652	AAUGCCC	ENST00000360966.5|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic) 	ENST00000411960.1|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic)
hg19_v2_chr1_-_91487013_91487070	0.0617088	AAUGCCC	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr1_-_244013384_244013430	0.0613392	AAUGCCC	ENST00000366539.1|AKT3|ENSG00000117020.12|v-akt murine thymoma viral oncogene homolog 3
hg19_v2_chr12_-_42538657_42538720	0.058513	AAUGCCC	ENST00000398675.3|GXYLT1|ENSG00000151233.6|glucoside xylosyltransferase 1
hg19_v2_chr4_-_103748880_103749047	0.0576507	AAUGCCC	ENST00000453744.2|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3 	ENST00000349311.8|UBE2D3|ENSG00000109332.15|ubiquitin-conjugating enzyme E2D 3
hg19_v2_chr17_-_48072574_48072597	0.0559207	AAUGCCC	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr20_+_56884752_56884799	0.0543096	AAUGCCC	ENST00000244040.3|RAB22A|ENSG00000124209.3|RAB22A, member RAS oncogene family
hg19_v2_chr2_-_183903133_183903210	0.0541944	AAUGCCC	ENST00000361354.4|NCKAP1|ENSG00000061676.10|NCK-associated protein 1
hg19_v2_chr10_-_98346801_98346812	0.0506297	AAUGCCC	ENST00000371142.4|TM9SF3|ENSG00000077147.10|transmembrane 9 superfamily member 3
hg19_v2_chr2_-_153574480_153574552	0.0492023	AAUGCCC	ENST00000410080.1|PRPF40A|ENSG00000196504.11|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
hg19_v2_chr1_-_78225482_78225544	0.0476879	AAUGCCC	ENST00000524778.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370794.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370793.1|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33 	ENST00000370792.3|USP33|ENSG00000077254.10|ubiquitin specific peptidase 33
hg19_v2_chr13_-_21476900_21476949	0.0450028	AAUGCCC	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr3_+_113775576_113775592	0.0433883	AAUGCCC	ENST00000485050.1|QTRTD1|ENSG00000151576.6|queuine tRNA-ribosyltransferase domain containing 1 	ENST00000281273.4|QTRTD1|ENSG00000151576.6|queuine tRNA-ribosyltransferase domain containing 1
hg19_v2_chr10_-_62149433_62149488	0.0428605	AAUGCCC	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr3_-_33481835_33481905	0.0415555	AAUGCCC	ENST00000283629.3|UBP1|ENSG00000153560.7|upstream binding protein 1 (LBP-1a)
hg19_v2_chr6_-_111804393_111804436	0.0413479	AAUGCCC	ENST00000368802.3|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit 	ENST00000368805.1|REV3L|ENSG00000009413.11|REV3-like, polymerase (DNA directed), zeta, catalytic subunit
hg19_v2_chr15_+_52121822_52121833	0.0405185	AAUGCCC	ENST00000558455.1|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous) 	ENST00000308580.7|TMOD3|ENSG00000138594.8|tropomodulin 3 (ubiquitous)
hg19_v2_chr1_+_78470530_78470551	0.0400551	AAUGCCC	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chrX_-_153979315_153979373	0.0396794	AAUGCCC	ENST00000369575.3|GAB3|ENSG00000160219.7|GRB2-associated binding protein 3 	ENST00000369568.4|GAB3|ENSG00000160219.7|GRB2-associated binding protein 3 	ENST00000424127.2|GAB3|ENSG00000160219.7|GRB2-associated binding protein 3
hg19_v2_chr5_-_90679145_90679176	0.0388625	AAUGCCC	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr6_-_46138676_46138726	0.0386229	AAUGCCC	ENST00000371383.2|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 	ENST00000230565.3|ENPP5|ENSG00000112796.5|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
hg19_v2_chr4_+_91048706_91048741	0.038422	AAUGCCC	ENST00000509176.1|CCSER1|ENSG00000184305.10|coiled-coil serine-rich protein 1
hg19_v2_chr5_+_172483347_172483407	0.0381264	AAUGCCC	ENST00000522692.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000296953.2|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000540014.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor 	ENST00000520420.1|CREBRF|ENSG00000164463.8|CREB3 regulatory factor
hg19_v2_chr1_-_23857698_23857733	0.0380955	AAUGCCC	ENST00000361729.2|E2F2|ENSG00000007968.6|E2F transcription factor 2
hg19_v2_chr10_+_89622870_89622870	0.0380632	AAUGCCC	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr4_+_38665810_38665827	0.03748	AAUGCCC	ENST00000261438.5|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic) 	ENST00000514033.1|KLF3|ENSG00000109787.8|Kruppel-like factor 3 (basic)
hg19_v2_chr6_+_16129308_16129402	0.0371791	AAUGCCC	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chrX_-_109561294_109561467	0.036857	AAUGCCC	ENST00000372059.2|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 	ENST00000262844.5|AMMECR1|ENSG00000101935.5|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
hg19_v2_chr1_+_97187318_97187380	0.0360911	AAUGCCC	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr17_+_55333876_55333939	0.0355602	AAUGCCC	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr12_+_68042495_68042508	0.0347688	AAUGCCC	ENST00000344096.3|DYRK2|ENSG00000127334.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
hg19_v2_chr5_-_89825328_89825422	0.0345664	AAUGCCC	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr9_+_114659046_114659102	0.0337585	AAUGCCC	ENST00000374279.3|UGCG|ENSG00000148154.5|UDP-glucose ceramide glucosyltransferase
hg19_v2_chr8_+_59323823_59323947	0.0336598	AAUGCCC	ENST00000399598.2|UBXN2B|ENSG00000215114.3|UBX domain protein 2B
hg19_v2_chr2_+_61108650_61108687	0.0326771	AAUGCCC	ENST00000295025.8|REL|ENSG00000162924.9|v-rel avian reticuloendotheliosis viral oncogene homolog
hg19_v2_chr1_+_36396677_36396749	0.0322162	AAUGCCC	ENST00000373191.4|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3 	ENST00000397828.2|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chr14_-_61190754_61190852	0.0316553	AAUGCCC	ENST00000216513.4|SIX4|ENSG00000100625.8|SIX homeobox 4
hg19_v2_chr12_-_75905374_75905420	0.0313376	AAUGCCC	ENST00000438169.2|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENST00000229214.4|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr1_-_155881156_155881210	0.0301339	AAUGCCC	ENST00000539040.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368323.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr1_-_22109682_22109719	0.0298514	AAUGCCC	ENST00000400301.1|USP48|ENSG00000090686.11|ubiquitin specific peptidase 48 	ENST00000532737.1|USP48|ENSG00000090686.11|ubiquitin specific peptidase 48
hg19_v2_chr16_-_79634595_79634620	0.0295508	AAUGCCC	ENST00000326043.4|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 	ENST00000393350.1|MAF|ENSG00000178573.6|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
hg19_v2_chr8_-_38239732_38239796	0.0294233	AAUGCCC	ENST00000534155.1|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000433384.2|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000317025.8|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1 	ENST00000316985.3|WHSC1L1|ENSG00000147548.12|Wolf-Hirschhorn syndrome candidate 1-like 1
hg19_v2_chr5_+_112312416_112312440	0.0286379	AAUGCCC	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr21_+_38071430_38071456	0.0286117	AAUGCCC	ENST00000290399.6|SIM2|ENSG00000159263.11|single-minded family bHLH transcription factor 2
hg19_v2_chr16_+_53088885_53088961	0.027346	AAUGCCC	ENST00000566029.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9 	ENST00000447540.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr12_+_56401268_56401443	0.0271642	AAUGCCC	ENST00000262032.5|IKZF4|ENSG00000123411.10|IKAROS family zinc finger 4 (Eos)
hg19_v2_chr12_+_66217911_66218018	0.0267819	AAUGCCC	ENST00000403681.2|HMGA2|ENSG00000149948.9|high mobility group AT-hook 2
hg19_v2_chr19_-_49576198_49576198	0.0266327	AAUGCCC	ENST00000221444.1|KCNA7|ENSG00000104848.1|potassium voltage-gated channel, shaker-related subfamily, member 7
hg19_v2_chr8_+_124780672_124780764	0.0261614	AAUGCCC	ENST00000521166.1|FAM91A1|ENSG00000176853.11|family with sequence similarity 91, member A1 	ENST00000334705.7|FAM91A1|ENSG00000176853.11|family with sequence similarity 91, member A1
hg19_v2_chr14_-_55878538_55878576	0.0260547	AAUGCCC	ENST00000247178.5|ATG14|ENSG00000126775.8|autophagy related 14
hg19_v2_chr2_-_180129484_180129574	0.0255711	AAUGCCC	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr5_-_39074479_39074515	0.0248606	AAUGCCC	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr13_-_53024725_53024809	0.0247591	AAUGCCC	ENST00000378060.4|VPS36|ENSG00000136100.8|vacuolar protein sorting 36 homolog (S. cerevisiae)
hg19_v2_chr3_-_113465065_113465147	0.0246336	AAUGCCC	ENST00000497255.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000478020.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000240922.3|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENST00000493900.1|NAA50|ENSG00000121579.8|N(alpha)-acetyltransferase 50, NatE catalytic subunit
hg19_v2_chr2_-_208634287_208634439	0.0238522	AAUGCCC	ENST00000295417.3|FZD5|ENSG00000163251.3|frizzled family receptor 5
hg19_v2_chr1_+_145611010_145611046	0.0238393	AAUGCCC	ENST00000369291.5|RNF115|ENSG00000121848.9|ring finger protein 115
hg19_v2_chr15_+_96873921_96873946	0.023833	AAUGCCC	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr8_-_82598511_82598570	0.0229673	AAUGCCC	ENST00000449740.2|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000311489.4|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000521360.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000519964.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1 	ENST00000518202.1|IMPA1|ENSG00000133731.5|inositol(myo)-1(or 4)-monophosphatase 1
hg19_v2_chr4_+_37245799_37245842	0.0226942	AAUGCCC	ENST00000309447.5|KIAA1239|ENSG00000174145.7|KIAA1239
hg19_v2_chr17_-_16118835_16118867	0.0222458	AAUGCCC	ENST00000582357.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000436828.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000411510.1|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1 	ENST00000268712.3|NCOR1|ENSG00000141027.16|nuclear receptor corepressor 1
hg19_v2_chr15_-_64995399_64995480	0.0222278	AAUGCCC	ENST00000559753.1|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000560258.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000559912.2|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2 	ENST00000326005.6|OAZ2|ENSG00000180304.10|ornithine decarboxylase antizyme 2
hg19_v2_chr11_-_77532050_77532066	0.0216115	AAUGCCC	ENST00000308488.6|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr6_-_88411911_88411928	0.0212032	AAUGCCC	ENST00000257787.5|AKIRIN2|ENSG00000135334.8|akirin 2
hg19_v2_chr15_+_41523335_41523350	0.0210507	AAUGCCC	ENST00000334660.5|CHP1|ENSG00000187446.7|calcineurin-like EF-hand protein 1
hg19_v2_chr3_+_101292939_101293063	0.0197295	AAUGCCC	ENST00000265260.3|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000469941.1|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein 	ENST00000296024.5|PCNP|ENSG00000081154.7|PEST proteolytic signal containing nuclear protein
hg19_v2_chr9_-_6007787_6007957	0.019328	AAUGCCC	ENST00000399933.3|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000381461.2|KIAA2026|ENSG00000183354.7|KIAA2026 	ENST00000513355.2|KIAA2026|ENSG00000183354.7|KIAA2026
hg19_v2_chr16_+_67063036_67063088	0.0188939	AAUGCCC	ENST00000290858.6|CBFB|ENSG00000067955.9|core-binding factor, beta subunit 	ENST00000564034.1|CBFB|ENSG00000067955.9|core-binding factor, beta subunit
hg19_v2_chrX_-_3631635_3631698	0.0183428	AAUGCCC	ENST00000262848.5|PRKX|ENSG00000183943.5|protein kinase, X-linked
hg19_v2_chr10_+_180987_181009	0.0178611	AAUGCCC	ENST00000381591.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr5_+_122181184_122181213	0.0178528	AAUGCCC	ENST00000513881.1|SNX24|ENSG00000064652.6|sorting nexin 24
hg19_v2_chr10_+_22610124_22610188	0.0176618	AAUGCCC	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr12_-_89918522_89918588	0.0171868	AAUGCCC	ENST00000529983.2|GALNT4|ENSG00000257594.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)
hg19_v2_chr5_-_142783175_142783297	0.0164351	AAUGCCC	ENST00000231509.3|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 	ENST00000394464.2|NR3C1|ENSG00000113580.10|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
hg19_v2_chr3_+_152552685_152552736	0.016083	AAUGCCC	ENST00000305097.3|P2RY1|ENSG00000169860.4|purinergic receptor P2Y, G-protein coupled, 1
hg19_v2_chr13_+_93879085_93879136	0.0160172	AAUGCCC	ENST00000377047.4|GPC6|ENSG00000183098.6|glypican 6
hg19_v2_chr12_-_89919965_89919978	0.0155443	AAUGCCC	ENST00000548729.1|POC1B-GALNT4|ENSG00000259075.2|POC1B-GALNT4 readthrough
hg19_v2_chr2_+_179345173_179345221	0.0154147	AAUGCCC	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chr17_+_68165657_68165688	0.0154067	AAUGCCC	ENST00000243457.3|KCNJ2|ENSG00000123700.4|potassium inwardly-rectifying channel, subfamily J, member 2
hg19_v2_chr21_-_28217721_28217735	0.0152864	AAUGCCC	ENST00000284984.3|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr3_+_43328004_43328095	0.0149238	AAUGCCC	ENST00000454177.1|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000429705.2|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000296088.7|SNRK|ENSG00000163788.9|SNF related kinase 	ENST00000437827.1|SNRK|ENSG00000163788.9|SNF related kinase
hg19_v2_chr13_+_114238997_114239077	0.0149036	AAUGCCC	ENST00000538138.1|TFDP1|ENSG00000198176.8|transcription factor Dp-1 	ENST00000375370.5|TFDP1|ENSG00000198176.8|transcription factor Dp-1
hg19_v2_chr11_+_2466218_2466255	0.014483	AAUGCCC	ENST00000155840.5|KCNQ1|ENSG00000053918.11|potassium voltage-gated channel, KQT-like subfamily, member 1
hg19_v2_chr11_-_27528301_27528336	0.0143775	AAUGCCC	ENST00000524596.1|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans) 	ENST00000278193.2|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans)
hg19_v2_chr12_-_15942309_15942330	0.0141653	AAUGCCC	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr3_+_38495333_38495422	0.0139329	AAUGCCC	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr1_-_28415204_28415227	0.013854	AAUGCCC	ENST00000373871.3|EYA3|ENSG00000158161.11|eyes absent homolog 3 (Drosophila)
hg19_v2_chr11_-_31839488_31839515	0.0136867	AAUGCCC	ENST00000419022.1|PAX6|ENSG00000007372.16|paired box 6 	ENST00000379132.3|PAX6|ENSG00000007372.16|paired box 6 	ENST00000379129.2|PAX6|ENSG00000007372.16|paired box 6
hg19_v2_chr3_-_48885228_48885327	0.0135725	AAUGCCC	ENST00000454963.1|PRKAR2A|ENSG00000114302.11|protein kinase, cAMP-dependent, regulatory, type II, alpha 	ENST00000296446.8|PRKAR2A|ENSG00000114302.11|protein kinase, cAMP-dependent, regulatory, type II, alpha 	ENST00000419216.1|PRKAR2A|ENSG00000114302.11|protein kinase, cAMP-dependent, regulatory, type II, alpha 	ENST00000265563.8|PRKAR2A|ENSG00000114302.11|protein kinase, cAMP-dependent, regulatory, type II, alpha
hg19_v2_chr17_-_37557846_37557920	0.0133363	AAUGCCC	ENST00000394294.3|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000583610.1|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20 	ENST00000264658.6|FBXL20|ENSG00000108306.7|F-box and leucine-rich repeat protein 20
hg19_v2_chr11_+_64073699_64073918	0.0130994	AAUGCCC	ENST00000405666.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha 	ENST00000468670.1|ESRRA|ENSG00000173153.9|estrogen-related receptor alpha
hg19_v2_chr3_-_11762202_11762226	0.0129151	AAUGCCC	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr2_-_157189180_157189290	0.0127908	AAUGCCC	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr7_+_104654623_104654669	0.0127883	AAUGCCC	ENST00000311117.3|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334877.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000257745.4|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000334914.7|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000478990.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000495267.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E 	ENST00000476671.1|KMT2E|ENSG00000005483.15|lysine (K)-specific methyltransferase 2E
hg19_v2_chr1_-_205719295_205719404	0.0122844	AAUGCCC	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr17_+_28804380_28804460	0.0122545	AAUGCCC	ENST00000225724.5|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000451249.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000467337.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000581721.1|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1 	ENST00000414833.2|GOSR1|ENSG00000108587.10|golgi SNAP receptor complex member 1
hg19_v2_chr10_-_120514720_120514758	0.0121193	AAUGCCC	ENST00000369151.3|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1 	ENST00000340214.4|CACUL1|ENSG00000151893.10|CDK2-associated, cullin domain 1
hg19_v2_chr4_-_11431389_11431389	0.0118279	AAUGCCC	ENST00000002596.5|HS3ST1|ENSG00000002587.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
hg19_v2_chr2_-_39348137_39348212	0.0117897	AAUGCCC	ENST00000426016.1|SOS1|ENSG00000115904.8|son of sevenless homolog 1 (Drosophila)
hg19_v2_chr8_+_128426535_128426535	0.0117767	AAUGCCC	ENST00000465342.2|POU5F1B|ENSG00000212993.3|POU class 5 homeobox 1B
hg19_v2_chr7_-_150652924_150652994	0.0111137	AAUGCCC	ENST00000330883.4|KCNH2|ENSG00000055118.10|potassium voltage-gated channel, subfamily H (eag-related), member 2
hg19_v2_chr5_-_32444828_32444872	0.0110914	AAUGCCC	ENST00000265069.8|ZFR|ENSG00000056097.11|zinc finger RNA binding protein
hg19_v2_chr11_-_68609377_68609399	0.0110847	AAUGCCC	ENST00000265641.5|CPT1A|ENSG00000110090.8|carnitine palmitoyltransferase 1A (liver) 	ENST00000376618.2|CPT1A|ENSG00000110090.8|carnitine palmitoyltransferase 1A (liver)
hg19_v2_chr5_-_65017921_65017968	0.010925	AAUGCCC	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr18_+_43753974_43754019	0.0105569	AAUGCCC	ENST00000282059.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25 	ENST00000321319.6|C18orf25|ENSG00000152242.6|chromosome 18 open reading frame 25
hg19_v2_chr8_+_54764346_54764460	0.0102394	AAUGCCC	ENST00000297313.3|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20 	ENST00000344277.6|RGS20|ENSG00000147509.9|regulator of G-protein signaling 20
hg19_v2_chr4_+_41992489_41992561	0.0101593	AAUGCCC	ENST00000264451.7|SLC30A9|ENSG00000014824.9|solute carrier family 30 (zinc transporter), member 9
hg19_v2_chr12_+_69864129_69864222	0.00957495	AAUGCCC	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr7_+_94285637_94285689	0.00936919	AAUGCCC	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr2_-_200322723_200322819	0.0092524	AAUGCCC	ENST00000417098.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr1_+_52521928_52521948	0.00889056	AAUGCCC	ENST00000489308.2|BTF3L4|ENSG00000134717.13|basic transcription factor 3-like 4
hg19_v2_chr3_+_51575596_51575596	0.00888978	AAUGCCC	ENST00000409535.2|RAD54L2|ENSG00000164080.9|RAD54-like 2 (S. cerevisiae)
hg19_v2_chr3_-_71774516_71774587	0.00878251	AAUGCCC	ENST00000425534.3|EIF4E3|ENSG00000163412.8|eukaryotic translation initiation factor 4E family member 3
hg19_v2_chr1_+_203274639_203274664	0.00780097	AAUGCCC	ENST00000290551.4|BTG2|ENSG00000159388.5|BTG family, member 2
hg19_v2_chr3_-_125094093_125094198	0.00779237	AAUGCCC	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr2_+_192542850_192542872	0.00759651	AAUGCCC	ENST00000410026.2|NABP1|ENSG00000173559.8|nucleic acid binding protein 1
hg19_v2_chr3_-_47823298_47823423	0.00744819	AAUGCCC	ENST00000254480.5|SMARCC1|ENSG00000173473.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
hg19_v2_chr4_+_145567173_145567296	0.00742381	AAUGCCC	ENST00000296575.3|HHIP|ENSG00000164161.5|hedgehog interacting protein
hg19_v2_chr3_-_15901278_15901354	0.00738385	AAUGCCC	ENST00000399451.2|ANKRD28|ENSG00000206560.6|ankyrin repeat domain 28
hg19_v2_chr10_+_101419187_101419313	0.00738315	AAUGCCC	ENST00000370489.4|ENTPD7|ENSG00000198018.6|ectonucleoside triphosphate diphosphohydrolase 7
hg19_v2_chr1_-_85462623_85462760	0.00734507	AAUGCCC	ENST00000370608.3|MCOLN2|ENSG00000153898.8|mucolipin 2
hg19_v2_chr7_-_151217001_151217019	0.00702996	AAUGCCC	ENST00000262187.5|RHEB|ENSG00000106615.5|Ras homolog enriched in brain
hg19_v2_chr17_+_35766965_35767030	0.00698822	AAUGCCC	ENST00000394395.2|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000589153.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A 	ENST00000586023.1|TADA2A|ENSG00000108264.12|transcriptional adaptor 2A
hg19_v2_chr1_-_153588334_153588414	0.00679154	AAUGCCC	ENST00000476873.1|S100A14|ENSG00000189334.4|S100 calcium binding protein A14
hg19_v2_chr18_+_34409069_34409203	0.00607965	AAUGCCC	ENST00000543923.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000280020.5|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000435985.2|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000592521.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000587139.1|KIAA1328|ENSG00000150477.10|KIAA1328
hg19_v2_chr1_+_29063271_29063283	0.00595069	AAUGCCC	ENST00000373812.3|YTHDF2|ENSG00000198492.10|YTH domain family, member 2
hg19_v2_chr5_-_43313574_43313614	0.00590635	AAUGCCC	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chrX_-_70288234_70288291	0.00554604	AAUGCCC	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr2_+_155554797_155554837	0.00529583	AAUGCCC	ENST00000295101.2|KCNJ3|ENSG00000162989.3|potassium inwardly-rectifying channel, subfamily J, member 3
hg19_v2_chrX_-_74376108_74376132	0.00493565	AAUGCCC	ENST00000339447.4|ABCB7|ENSG00000131269.11|ATP-binding cassette, sub-family B (MDR/TAP), member 7 	ENST00000373394.3|ABCB7|ENSG00000131269.11|ATP-binding cassette, sub-family B (MDR/TAP), member 7 	ENST00000529949.1|ABCB7|ENSG00000131269.11|ATP-binding cassette, sub-family B (MDR/TAP), member 7 	ENST00000534524.1|ABCB7|ENSG00000131269.11|ATP-binding cassette, sub-family B (MDR/TAP), member 7 	ENST00000253577.3|ABCB7|ENSG00000131269.11|ATP-binding cassette, sub-family B (MDR/TAP), member 7
hg19_v2_chr7_-_141401951_141401985	0.00482427	AAUGCCC	ENST00000536163.1|KIAA1147|ENSG00000257093.2|KIAA1147
hg19_v2_chr15_+_68346501_68346550	0.00477699	AAUGCCC	ENST00000249636.6|PIAS1|ENSG00000033800.9|protein inhibitor of activated STAT, 1
hg19_v2_chr2_-_43453734_43453751	0.00470634	AAUGCCC	ENST00000282388.3|ZFP36L2|ENSG00000152518.5|ZFP36 ring finger protein-like 2
hg19_v2_chr12_-_31479045_31479074	0.00442229	AAUGCCC	ENST00000539409.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A 	ENST00000395766.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr12_-_67072714_67072925	0.00433828	AAUGCCC	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr1_+_202976493_202976530	0.00428398	AAUGCCC	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr12_+_27396901_27397108	0.00397504	AAUGCCC	ENST00000541191.1|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like 	ENST00000389032.3|STK38L|ENSG00000211455.3|serine/threonine kinase 38 like
hg19_v2_chr1_+_161284047_161284180	0.00385899	AAUGCCC	ENST00000367975.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000342751.4|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000432287.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000392169.2|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa 	ENST00000513009.1|SDHC|ENSG00000143252.10|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa
hg19_v2_chr18_+_56338618_56338656	0.00375452	AAUGCCC	ENST00000348428.3|MALT1|ENSG00000172175.8|mucosa associated lymphoid tissue lymphoma translocation gene 1
hg19_v2_chr11_+_65101225_65101359	0.00374656	AAUGCCC	ENST00000528416.1|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000415073.2|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000252268.4|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2
hg19_v2_chr10_-_105615164_105615323	0.0035992	AAUGCCC	ENST00000355946.2|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A 	ENST00000369774.4|SH3PXD2A|ENSG00000107957.12|SH3 and PX domains 2A
hg19_v2_chr1_+_36273743_36273773	0.00308339	AAUGCCC	ENST00000373210.3|AGO4|ENSG00000134698.10|argonaute RISC catalytic component 4
hg19_v2_chr3_-_79068594_79068627	0.00287717	AAUGCCC	ENST00000436010.2|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr22_+_32340481_32340510	0.00221879	AAUGCCC	ENST00000397492.1|YWHAH|ENSG00000128245.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta
hg19_v2_chr1_-_35658736_35658754	0.00206353	AAUGCCC	ENST00000357214.5|SFPQ|ENSG00000116560.6|splicing factor proline/glutamine-rich
hg19_v2_chr10_+_22605304_22605372	0.00191644	AAUGCCC	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr7_+_138145076_138145116	0.00154562	AAUGCCC	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr5_+_74632993_74633028	0.00150022	AAUGCCC	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr9_+_131445928_131445934	0.000730882	AAUGCCC	ENST00000372692.4|SET|ENSG00000119335.12|SET nuclear oncogene
hg19_v2_chrX_+_73641286_73641400	0.000600643	AAUGCCC	ENST00000587091.1|SLC16A2|ENSG00000147100.5|solute carrier family 16, member 2 (thyroid hormone transporter)
hg19_v2_chr11_+_48002076_48002132	0.000340215	AAUGCCC	ENST00000418331.2|PTPRJ|ENSG00000149177.8|protein tyrosine phosphatase, receptor type, J 	ENST00000440289.2|PTPRJ|ENSG00000149177.8|protein tyrosine phosphatase, receptor type, J
hg19_v2_chr9_+_128024067_128024190	0.000262528	AAUGCCC	ENST00000461379.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394084.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394105.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000470056.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394104.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000265956.4|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000394083.2|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000495955.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000467750.1|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1 	ENST00000297933.6|GAPVD1|ENSG00000165219.17|GTPase activating protein and VPS9 domains 1
hg19_v2_chr12_-_66524482_66524548	0.000160325	AAUGCCC	ENST00000446587.2|LLPH|ENSG00000139233.2|LLP homolog, long-term synaptic facilitation (Aplysia) 	ENST00000266604.2|LLPH|ENSG00000139233.2|LLP homolog, long-term synaptic facilitation (Aplysia)
hg19_v2_chr11_-_102962929_102962944	8.70309e-05	AAUGCCC	ENST00000260247.5|DCUN1D5|ENSG00000137692.7|DCN1, defective in cullin neddylation 1, domain containing 5
