NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ZNF143 | hg19_v2_chr11_+_9482512_9482534 | -0.54 | 2.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_48673465 Show fit | 2.92 |
ENST00000598938.1
|
ligase I, DNA, ATP-dependent |
|
chr19_-_44123734 Show fit | 1.10 |
ENST00000598676.1
|
zinc finger protein 428 |
|
chr1_+_244816371 Show fit | 0.98 |
ENST00000263831.7
|
desumoylating isopeptidase 2 |
|
chr7_+_111846741 Show fit | 0.95 |
ENST00000421043.1
ENST00000425229.1 ENST00000450657.1 |
zinc finger protein 277 |
|
chr1_+_244816237 Show fit | 0.94 |
ENST00000302550.11
|
desumoylating isopeptidase 2 |
|
chr13_-_31736132 Show fit | 0.82 |
ENST00000429785.2
|
heat shock 105kDa/110kDa protein 1 |
|
chr12_+_64798095 Show fit | 0.80 |
ENST00000332707.5
|
exportin, tRNA |
|
chr2_-_148778258 Show fit | 0.77 |
ENST00000392857.5
ENST00000457954.1 ENST00000392858.1 ENST00000542387.1 |
origin recognition complex, subunit 4 |
|
chr5_-_171433548 Show fit | 0.72 |
ENST00000517395.1
|
F-box and WD repeat domain containing 11 |
|
chr5_+_64920826 Show fit | 0.71 |
ENST00000438419.2
ENST00000231526.4 ENST00000505553.1 ENST00000545191.1 |
trafficking protein particle complex 13 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0035735 | intraciliary transport involved in cilium morphogenesis(GO:0035735) |
0.2 | 1.8 | GO:1903751 | regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide(GO:1903750) negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide(GO:1903751) |
0.6 | 1.7 | GO:1903461 | Okazaki fragment processing involved in mitotic DNA replication(GO:1903461) |
0.0 | 1.7 | GO:2000772 | regulation of cellular senescence(GO:2000772) |
0.1 | 1.4 | GO:0034501 | protein localization to kinetochore(GO:0034501) |
0.1 | 1.4 | GO:0001682 | tRNA 5'-leader removal(GO:0001682) |
0.0 | 1.3 | GO:0042753 | positive regulation of circadian rhythm(GO:0042753) |
0.4 | 1.1 | GO:0070632 | spindle pole body duplication(GO:0030474) spindle pole body organization(GO:0051300) spindle pole body localization(GO:0070631) establishment of spindle pole body localization(GO:0070632) spindle pole body localization to nuclear envelope(GO:0071789) establishment of spindle pole body localization to nuclear envelope(GO:0071790) |
0.1 | 1.0 | GO:0044598 | polyketide metabolic process(GO:0030638) daunorubicin metabolic process(GO:0044597) doxorubicin metabolic process(GO:0044598) |
0.0 | 1.0 | GO:0042276 | error-prone translesion synthesis(GO:0042276) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
0.1 | 1.8 | GO:0071682 | endocytic vesicle lumen(GO:0071682) |
0.0 | 1.6 | GO:0034451 | centriolar satellite(GO:0034451) |
0.0 | 1.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.1 | 1.5 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.4 | 1.1 | GO:0070762 | nuclear pore transmembrane ring(GO:0070762) |
0.0 | 0.9 | GO:0035102 | PRC1 complex(GO:0035102) |
0.1 | 0.8 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
0.1 | 0.8 | GO:0035068 | micro-ribonucleoprotein complex(GO:0035068) |
0.0 | 0.8 | GO:0035861 | site of double-strand break(GO:0035861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0000774 | adenyl-nucleotide exchange factor activity(GO:0000774) |
0.1 | 1.7 | GO:0003910 | DNA ligase (ATP) activity(GO:0003910) |
0.0 | 1.6 | GO:0017112 | Rab guanyl-nucleotide exchange factor activity(GO:0017112) |
0.1 | 1.5 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.0 | 1.4 | GO:0042169 | SH2 domain binding(GO:0042169) |
0.0 | 1.4 | GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding(GO:0000979) |
0.3 | 1.0 | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity(GO:0003955) 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity(GO:0047025) |
0.0 | 1.0 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 1.0 | GO:0003887 | DNA-directed DNA polymerase activity(GO:0003887) |
0.2 | 0.9 | GO:0004583 | dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity(GO:0004583) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.0 | 1.4 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.4 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 0.4 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.1 | 1.3 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 1.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 1.0 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.8 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.7 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.0 | 0.6 | REACTOME MICRORNA MIRNA BIOGENESIS | Genes involved in MicroRNA (miRNA) Biogenesis |
0.0 | 0.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.5 | REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1 | Genes involved in Regulation of AMPK activity via LKB1 |