NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSG00000184937.8 | WT1 transcription factor | |
ENSG00000188786.9 | metal regulatory transcription factor 1 | |
ENSG00000160685.9 | zinc finger and BTB domain containing 7B |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MTF1 | hg19_v2_chr1_-_38325256_38325292 | -0.82 | 4.5e-02 | Click! |
WT1 | hg19_v2_chr11_-_32452357_32452363 | 0.75 | 8.4e-02 | Click! |
ZBTB7B | hg19_v2_chr1_+_154975258_154975330 | 0.12 | 8.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_18717627 Show fit | 2.01 |
ENST00000392386.3
|
cytokine receptor-like factor 1 |
|
chr5_-_176433565 Show fit | 1.67 |
ENST00000428382.2
|
ubiquitin interaction motif containing 1 |
|
chr2_+_220306238 Show fit | 1.62 |
ENST00000435853.1
|
SPEG complex locus |
|
chr13_-_99738867 Show fit | 1.39 |
ENST00000427887.1
|
dedicator of cytokinesis 9 |
|
chr19_+_55795493 Show fit | 1.37 |
ENST00000309383.1
|
BR serine/threonine kinase 1 |
|
chr16_+_56691606 Show fit | 1.26 |
ENST00000334350.6
|
metallothionein 1F |
|
chr9_-_140317605 Show fit | 1.22 |
ENST00000479452.1
ENST00000465160.2 |
exonuclease 3'-5' domain containing 3 |
|
chr10_-_82116497 Show fit | 1.21 |
ENST00000372204.3
|
DPY30 domain containing 1 |
|
chr15_+_76352178 Show fit | 1.19 |
ENST00000388942.3
|
chromosome 15 open reading frame 27 |
|
chr7_-_559853 Show fit | 1.17 |
ENST00000405692.2
|
platelet-derived growth factor alpha polypeptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | GO:0022038 | corpus callosum development(GO:0022038) |
0.5 | 2.8 | GO:0030421 | defecation(GO:0030421) |
0.1 | 2.6 | GO:0006646 | phosphatidylethanolamine biosynthetic process(GO:0006646) |
0.2 | 2.2 | GO:0015911 | plasma membrane long-chain fatty acid transport(GO:0015911) |
0.7 | 2.0 | GO:0007387 | anterior compartment pattern formation(GO:0007387) posterior compartment specification(GO:0007388) |
0.4 | 2.0 | GO:2000672 | negative regulation of motor neuron apoptotic process(GO:2000672) |
0.0 | 2.0 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.0 | 2.0 | GO:0007218 | neuropeptide signaling pathway(GO:0007218) |
0.2 | 1.9 | GO:0021842 | directional guidance of interneurons involved in migration from the subpallium to the cortex(GO:0021840) chemorepulsion involved in interneuron migration from the subpallium to the cortex(GO:0021842) ERBB3 signaling pathway(GO:0038129) |
0.1 | 1.9 | GO:2001135 | regulation of endocytic recycling(GO:2001135) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | GO:0043202 | lysosomal lumen(GO:0043202) |
0.0 | 5.6 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.0 | 5.4 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 3.9 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 3.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) |
0.0 | 3.0 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 2.6 | GO:0030673 | axolemma(GO:0030673) |
0.0 | 2.5 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.1 | 2.2 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
0.1 | 2.2 | GO:0016514 | SWI/SNF complex(GO:0016514) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 3.5 | GO:0005109 | frizzled binding(GO:0005109) |
0.0 | 3.0 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 2.7 | GO:0031491 | nucleosome binding(GO:0031491) |
0.0 | 2.3 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.0 | 2.2 | GO:0008083 | growth factor activity(GO:0008083) |
0.2 | 2.1 | GO:0030297 | transmembrane receptor protein tyrosine kinase activator activity(GO:0030297) |
0.2 | 2.1 | GO:0019826 | oxygen sensor activity(GO:0019826) |
0.4 | 2.0 | GO:0004306 | ethanolamine-phosphate cytidylyltransferase activity(GO:0004306) |
0.0 | 2.0 | GO:0070577 | lysine-acetylated histone binding(GO:0070577) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 3.4 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 3.0 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 3.0 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 3.0 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 2.9 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 2.7 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 2.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 2.4 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 2.4 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 3.0 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |
0.0 | 2.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 2.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 2.2 | REACTOME DOWNREGULATION OF ERBB2 ERBB3 SIGNALING | Genes involved in Downregulation of ERBB2:ERBB3 signaling |
0.1 | 2.1 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 2.1 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.0 | 2.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 1.8 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.0 | 1.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |