NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SNAI1 | hg19_v2_chr20_+_48599506_48599536 | 0.27 | 6.1e-01 | Click! |
TWIST1 | hg19_v2_chr7_-_19157248_19157295 | -0.20 | 7.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_150406527 Show fit | 0.79 |
ENST00000520059.1
|
glutathione peroxidase 3 (plasma) |
|
chr19_-_18391708 Show fit | 0.69 |
ENST00000600972.1
|
jun D proto-oncogene |
|
chr1_+_27668505 Show fit | 0.63 |
ENST00000318074.5
|
synaptotagmin-like 1 |
|
chr7_+_149411860 Show fit | 0.59 |
ENST00000486744.1
|
KRAB-A domain containing 1 |
|
chr2_+_121493717 Show fit | 0.59 |
ENST00000418323.1
|
GLI family zinc finger 2 |
|
chr2_+_220306238 Show fit | 0.55 |
ENST00000435853.1
|
SPEG complex locus |
|
chr7_-_120497178 Show fit | 0.47 |
ENST00000441017.1
ENST00000424710.1 ENST00000433758.1 |
tetraspanin 12 |
|
chr15_+_40544749 Show fit | 0.45 |
ENST00000559617.1
ENST00000560684.1 |
p21 protein (Cdc42/Rac)-activated kinase 6 |
|
chr2_+_219745020 Show fit | 0.44 |
ENST00000258411.3
|
wingless-type MMTV integration site family, member 10A |
|
chr1_-_95285652 Show fit | 0.42 |
ENST00000442418.1
|
long intergenic non-protein coding RNA 1057 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.1 | 0.8 | GO:0006982 | response to lipid hydroperoxide(GO:0006982) |
0.0 | 0.7 | GO:0002076 | osteoblast development(GO:0002076) |
0.2 | 0.6 | GO:0021776 | smoothened signaling pathway involved in ventral spinal cord interneuron specification(GO:0021775) smoothened signaling pathway involved in spinal cord motor neuron cell fate specification(GO:0021776) |
0.0 | 0.6 | GO:0060042 | retina morphogenesis in camera-type eye(GO:0060042) |
0.2 | 0.5 | GO:0045062 | extrathymic T cell selection(GO:0045062) |
0.2 | 0.5 | GO:1903461 | Okazaki fragment processing involved in mitotic DNA replication(GO:1903461) |
0.1 | 0.5 | GO:1904582 | regulation of intracellular mRNA localization(GO:1904580) positive regulation of intracellular mRNA localization(GO:1904582) |
0.0 | 0.5 | GO:0048733 | sebaceous gland development(GO:0048733) |
0.0 | 0.5 | GO:0019532 | oxalate transport(GO:0019532) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | GO:0035976 | AP1 complex(GO:0035976) |
0.0 | 0.7 | GO:0031528 | microvillus membrane(GO:0031528) |
0.0 | 0.7 | GO:0097546 | ciliary base(GO:0097546) |
0.0 | 0.4 | GO:0005890 | sodium:potassium-exchanging ATPase complex(GO:0005890) |
0.1 | 0.3 | GO:0043260 | laminin-11 complex(GO:0043260) |
0.1 | 0.3 | GO:0034678 | smooth muscle contractile fiber(GO:0030485) integrin alpha8-beta1 complex(GO:0034678) |
0.0 | 0.3 | GO:0070695 | FHF complex(GO:0070695) |
0.0 | 0.3 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.0 | 0.3 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
0.0 | 0.3 | GO:0005652 | nuclear lamina(GO:0005652) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | GO:0008430 | selenium binding(GO:0008430) |
0.0 | 0.8 | GO:0042043 | neurexin family protein binding(GO:0042043) |
0.0 | 0.8 | GO:0035925 | mRNA 3'-UTR AU-rich region binding(GO:0035925) |
0.0 | 0.7 | GO:0016922 | ligand-dependent nuclear receptor binding(GO:0016922) |
0.0 | 0.6 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.0 | 0.6 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.0 | 0.5 | GO:0003910 | DNA ligase (ATP) activity(GO:0003910) |
0.0 | 0.5 | GO:0019531 | oxalate transmembrane transporter activity(GO:0019531) |
0.0 | 0.5 | GO:0051959 | dynein light intermediate chain binding(GO:0051959) |
0.0 | 0.4 | GO:0004065 | arylsulfatase activity(GO:0004065) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.6 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 0.4 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.1 | 0.3 | PID S1P S1P4 PATHWAY | S1P4 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
0.0 | 0.4 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |
0.0 | 0.3 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.0 | 0.3 | REACTOME REGULATION OF IFNG SIGNALING | Genes involved in Regulation of IFNG signaling |
0.0 | 0.3 | REACTOME DESTABILIZATION OF MRNA BY BRF1 | Genes involved in Destabilization of mRNA by Butyrate Response Factor 1 (BRF1) |
0.0 | 0.3 | REACTOME ACTIVATION OF GENES BY ATF4 | Genes involved in Activation of Genes by ATF4 |
0.0 | 0.2 | REACTOME DESTABILIZATION OF MRNA BY TRISTETRAPROLIN TTP | Genes involved in Destabilization of mRNA by Tristetraprolin (TTP) |
0.0 | 0.2 | REACTOME PROSTANOID LIGAND RECEPTORS | Genes involved in Prostanoid ligand receptors |
0.0 | 0.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.2 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |