NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
PML | hg19_v2_chr15_+_74287009_74287018 | -0.45 | 3.7e-01 | Click! |
SP4 | hg19_v2_chr7_+_21467642_21467671 | 0.36 | 4.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_122241812 Show fit | 0.85 |
ENST00000538335.1
|
AC084018.1 |
|
chr12_+_105724613 Show fit | 0.84 |
ENST00000549934.2
|
chromosome 12 open reading frame 75 |
|
chr8_-_145578505 Show fit | 0.67 |
ENST00000526263.1
ENST00000398633.3 |
transmembrane protein 249 |
|
chr19_+_48112371 Show fit | 0.63 |
ENST00000594866.1
|
glioma tumor suppressor candidate region gene 1 |
|
chr8_-_142318398 Show fit | 0.59 |
ENST00000520137.1
|
solute carrier family 45, member 4 |
|
chr16_-_54963026 Show fit | 0.56 |
ENST00000560208.1
ENST00000557792.1 |
colorectal neoplasia differentially expressed (non-protein coding) |
|
chr14_+_60716276 Show fit | 0.51 |
ENST00000528241.2
|
protein phosphatase, Mg2+/Mn2+ dependent, 1A |
|
chr16_-_80838195 Show fit | 0.49 |
ENST00000570137.2
|
chromodomain protein, Y-like 2 |
|
chr7_-_139876734 Show fit | 0.49 |
ENST00000006967.5
|
lysine (K)-specific demethylase 7A |
|
chr6_-_163834852 Show fit | 0.45 |
ENST00000604200.1
|
colon adenocarcinoma hypermethylated (non-protein coding) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0032486 | Rap protein signal transduction(GO:0032486) |
0.1 | 1.2 | GO:1903830 | magnesium ion transmembrane transport(GO:1903830) |
0.1 | 1.1 | GO:0006499 | N-terminal protein myristoylation(GO:0006499) |
0.0 | 1.1 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
0.0 | 0.9 | GO:0015697 | quaternary ammonium group transport(GO:0015697) |
0.0 | 0.8 | GO:0090503 | RNA phosphodiester bond hydrolysis, exonucleolytic(GO:0090503) |
0.0 | 0.8 | GO:0050690 | regulation of defense response to virus by virus(GO:0050690) |
0.0 | 0.8 | GO:0006904 | vesicle docking involved in exocytosis(GO:0006904) |
0.0 | 0.7 | GO:0043402 | glucocorticoid mediated signaling pathway(GO:0043402) |
0.0 | 0.7 | GO:0035735 | intraciliary transport involved in cilium morphogenesis(GO:0035735) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0035577 | azurophil granule membrane(GO:0035577) |
0.0 | 0.9 | GO:0035102 | PRC1 complex(GO:0035102) |
0.0 | 0.9 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.0 | 0.9 | GO:0045334 | clathrin-coated endocytic vesicle(GO:0045334) |
0.0 | 0.8 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) |
0.0 | 0.8 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 0.8 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 0.7 | GO:0072357 | PTW/PP1 phosphatase complex(GO:0072357) |
0.0 | 0.7 | GO:0033391 | chromatoid body(GO:0033391) |
0.0 | 0.7 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0019003 | GDP binding(GO:0019003) |
0.0 | 1.7 | GO:0017112 | Rab guanyl-nucleotide exchange factor activity(GO:0017112) |
0.1 | 1.5 | GO:0033192 | calmodulin-dependent protein phosphatase activity(GO:0033192) |
0.1 | 1.2 | GO:0015095 | magnesium ion transmembrane transporter activity(GO:0015095) |
0.1 | 1.0 | GO:0050291 | sphingosine N-acyltransferase activity(GO:0050291) |
0.0 | 0.9 | GO:0030618 | transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity(GO:0030618) |
0.0 | 0.8 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
0.0 | 0.8 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
0.0 | 0.7 | GO:0004791 | thioredoxin-disulfide reductase activity(GO:0004791) |
0.0 | 0.7 | GO:0016594 | glycine binding(GO:0016594) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.0 | 1.5 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.0 | 1.4 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 1.3 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
0.0 | 1.2 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 1.2 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 1.0 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.9 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.0 | 0.8 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.8 | PID BARD1 PATHWAY | BARD1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | REACTOME G ALPHA1213 SIGNALLING EVENTS | Genes involved in G alpha (12/13) signalling events |
0.0 | 1.6 | REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1 | Genes involved in Regulation of AMPK activity via LKB1 |
0.0 | 1.4 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
0.0 | 1.2 | REACTOME GRB2 SOS PROVIDES LINKAGE TO MAPK SIGNALING FOR INTERGRINS | Genes involved in GRB2:SOS provides linkage to MAPK signaling for Intergrins |
0.0 | 1.1 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.0 | 1.1 | REACTOME DOWNREGULATION OF TGF BETA RECEPTOR SIGNALING | Genes involved in Downregulation of TGF-beta receptor signaling |
0.0 | 1.0 | REACTOME TIE2 SIGNALING | Genes involved in Tie2 Signaling |
0.0 | 1.0 | REACTOME CTLA4 INHIBITORY SIGNALING | Genes involved in CTLA4 inhibitory signaling |
0.0 | 1.0 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.0 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |