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NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
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Results for GGCUCAG
Z-value: 0.42
Motif logo
miRNA associated with seed GGCUCAG
| Name | miRBASE accession |
|---|---|
|
hsa-miR-24-3p
|
MIMAT0000080 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr7_-_74867509 Show fit | 0.17 |
ENST00000426327.3
|
GATS protein-like 2 |
|
| chr1_-_200992827 Show fit | 0.15 |
ENST00000332129.2
ENST00000422435.2 |
kinesin family member 21B |
|
| chr17_-_61777459 Show fit | 0.13 |
ENST00000578993.1
ENST00000583211.1 ENST00000259006.3 |
LIM domain containing 2 |
|
| chr6_-_20212630 Show fit | 0.12 |
ENST00000324607.7
ENST00000541730.1 ENST00000536798.1 |
membrane bound O-acyltransferase domain containing 1 |
|
| chr4_+_84457250 Show fit | 0.10 |
ENST00000395226.2
|
1-acylglycerol-3-phosphate O-acyltransferase 9 |
|
| chr16_+_67927147 Show fit | 0.10 |
ENST00000291041.5
|
protein serine kinase H1 |
|
| chr8_-_10697281 Show fit | 0.10 |
ENST00000524114.1
ENST00000553390.1 ENST00000554914.1 |
PIN2/TERF1 interacting, telomerase inhibitor 1 SRY (sex determining region Y)-box 7 Transcription factor SOX-7; Uncharacterized protein; cDNA FLJ58508, highly similar to Transcription factor SOX-7 |
|
| chrX_+_56259316 Show fit | 0.09 |
ENST00000468660.1
|
Kruppel-like factor 8 |
|
| chr8_+_24772455 Show fit | 0.09 |
ENST00000433454.2
|
neurofilament, medium polypeptide |
|
| chr17_+_19281034 Show fit | 0.09 |
ENST00000308406.5
ENST00000299612.7 |
mitogen-activated protein kinase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of GGCUCAG
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0033693 | neurofilament bundle assembly(GO:0033693) |
| 0.0 | 0.1 | GO:0070376 | regulation of ERK5 cascade(GO:0070376) negative regulation of ERK5 cascade(GO:0070377) |
| 0.0 | 0.1 | GO:0032903 | viral protein processing(GO:0019082) regulation of nerve growth factor production(GO:0032903) negative regulation of nerve growth factor production(GO:0032904) dibasic protein processing(GO:0090472) |
| 0.0 | 0.1 | GO:0003245 | cardiac muscle tissue growth involved in heart morphogenesis(GO:0003245) |
| 0.0 | 0.1 | GO:0099542 | trans-synaptic signaling by lipid(GO:0099541) trans-synaptic signaling by endocannabinoid(GO:0099542) |
| 0.0 | 0.1 | GO:1904751 | positive regulation of telomeric DNA binding(GO:1904744) positive regulation of protein localization to nucleolus(GO:1904751) |
| 0.0 | 0.1 | GO:0061582 | intestinal epithelial cell migration(GO:0061582) |
| 0.0 | 0.1 | GO:0006238 | CMP salvage(GO:0006238) CMP biosynthetic process(GO:0009224) CMP metabolic process(GO:0046035) |
| 0.0 | 0.1 | GO:0006680 | glucosylceramide catabolic process(GO:0006680) |
| 0.0 | 0.1 | GO:0070309 | lens fiber cell morphogenesis(GO:0070309) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0044393 | microspike(GO:0044393) |
| 0.0 | 0.1 | GO:0043196 | varicosity(GO:0043196) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0004348 | glucosylceramidase activity(GO:0004348) |
| 0.0 | 0.1 | GO:0003943 | N-acetylgalactosamine-4-sulfatase activity(GO:0003943) |
| 0.0 | 0.1 | GO:0032422 | purine-rich negative regulatory element binding(GO:0032422) |
| 0.0 | 0.1 | GO:0010521 | telomerase inhibitor activity(GO:0010521) |
| 0.0 | 0.1 | GO:0048406 | nerve growth factor binding(GO:0048406) |
| 0.0 | 0.0 | GO:0070984 | SET domain binding(GO:0070984) |
| 0.0 | 0.0 | GO:0004813 | alanine-tRNA ligase activity(GO:0004813) |
| 0.0 | 0.0 | GO:0005017 | platelet-derived growth factor-activated receptor activity(GO:0005017) |
| 0.0 | 0.0 | GO:0070506 | high-density lipoprotein particle receptor activity(GO:0070506) |
Gene overrepresentation in C2:CP category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |