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NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)

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Results for GAGAUGA

Z-value: 0.34

Motif logo

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miRNA associated with seed GAGAUGA

NamemiRBASE accession
hsa-miR-143-3p
MIMAT0000435
hsa-miR-4770
MIMAT0019924
hsa-miR-6088
MIMAT0023713

Activity profile of GAGAUGA motif

Sorted Z-values of GAGAUGA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chrX_-_106959631 0.20 ENST00000486554.1
ENST00000372390.4
TSC22D3
TSC22 domain family, member 3
chr3_-_122102065 0.13 ENST00000479899.1
ENST00000291458.5
ENST00000497726.1
CCDC58
coiled-coil domain containing 58
chr13_+_48807288 0.12 ENST00000378565.5
ITM2B
integral membrane protein 2B
chr18_+_9136758 0.11 ENST00000383440.2
ENST00000262126.4
ENST00000577992.1
ANKRD12
ankyrin repeat domain 12
chr17_+_55333876 0.10 ENST00000284073.2
MSI2
musashi RNA-binding protein 2
chr6_-_99963252 0.10 ENST00000392738.2
ENST00000327681.6
ENST00000472914.2
USP45
ubiquitin specific peptidase 45
chr16_-_79634595 0.09 ENST00000326043.4
ENST00000393350.1
MAF
v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
chr13_+_41363581 0.08 ENST00000338625.4
SLC25A15
solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
chr15_-_49338748 0.07 ENST00000559471.1
SECISBP2L
SECIS binding protein 2-like
chr22_+_40390930 0.07 ENST00000333407.6
FAM83F
family with sequence similarity 83, member F
chr12_+_50898881 0.07 ENST00000301180.5
DIP2B
DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr1_+_87794150 0.07 ENST00000370544.5
LMO4
LIM domain only 4
chr14_+_105992906 0.06 ENST00000392519.2
TMEM121
transmembrane protein 121
chr5_-_142065612 0.05 ENST00000360966.5
ENST00000411960.1
FGF1
fibroblast growth factor 1 (acidic)
chr6_+_76458909 0.05 ENST00000369981.3
ENST00000369985.4
MYO6
myosin VI
chr1_-_211752073 0.05 ENST00000367001.4
SLC30A1
solute carrier family 30 (zinc transporter), member 1
chr15_-_44486632 0.05 ENST00000484674.1
FRMD5
FERM domain containing 5
chr2_+_173292301 0.05 ENST00000264106.6
ENST00000375221.2
ENST00000343713.4
ITGA6
integrin, alpha 6
chr15_+_85923856 0.05 ENST00000560302.1
ENST00000394518.2
ENST00000361243.2
ENST00000560256.1
AKAP13
A kinase (PRKA) anchor protein 13
chr17_+_28705921 0.05 ENST00000225719.4
CPD
carboxypeptidase D
chr6_-_46138676 0.05 ENST00000371383.2
ENST00000230565.3
ENPP5
ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
chr10_+_111767720 0.05 ENST00000356080.4
ENST00000277900.8
ADD3
adducin 3 (gamma)
chr12_-_65146636 0.05 ENST00000418919.2
GNS
glucosamine (N-acetyl)-6-sulfatase
chr14_+_37667118 0.05 ENST00000556615.1
ENST00000327441.7
ENST00000536774.1
MIPOL1
mirror-image polydactyly 1
chr11_+_13690200 0.04 ENST00000354817.3
FAR1
fatty acyl CoA reductase 1
chr18_-_29522989 0.04 ENST00000582539.1
ENST00000283351.4
ENST00000582513.1
TRAPPC8
trafficking protein particle complex 8
chr20_-_62284766 0.04 ENST00000370053.1
STMN3
stathmin-like 3
chr11_+_86748863 0.04 ENST00000340353.7
TMEM135
transmembrane protein 135
chrX_-_109561294 0.04 ENST00000372059.2
ENST00000262844.5
AMMECR1
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr14_-_96830207 0.04 ENST00000359933.4
ATG2B
autophagy related 2B
chr4_+_184826418 0.04 ENST00000308497.4
ENST00000438269.1
STOX2
storkhead box 2
chr12_-_42538657 0.04 ENST00000398675.3
GXYLT1
glucoside xylosyltransferase 1
chr6_-_132272504 0.04 ENST00000367976.3
CTGF
connective tissue growth factor
chr3_+_72937182 0.03 ENST00000389617.4
GXYLT2
glucoside xylosyltransferase 2
chr9_-_123476719 0.03 ENST00000373930.3
MEGF9
multiple EGF-like-domains 9
chr15_-_100258029 0.03 ENST00000378904.2
DKFZP779J2370
DKFZP779J2370
chr3_-_37034702 0.03 ENST00000322716.5
EPM2AIP1
EPM2A (laforin) interacting protein 1
chr2_+_26568965 0.03 ENST00000260585.7
ENST00000447170.1
EPT1
ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
chr11_-_118047376 0.03 ENST00000278947.5
SCN2B
sodium channel, voltage-gated, type II, beta subunit
chr4_+_44680429 0.03 ENST00000281543.5
GUF1
GUF1 GTPase homolog (S. cerevisiae)
chr11_+_113930291 0.03 ENST00000335953.4
ZBTB16
zinc finger and BTB domain containing 16
chr13_-_33002151 0.03 ENST00000495479.1
ENST00000343281.4
ENST00000464470.1
ENST00000380139.4
ENST00000380133.2
N4BP2L1
NEDD4 binding protein 2-like 1
chr11_-_79151695 0.03 ENST00000278550.7
TENM4
teneurin transmembrane protein 4
chr1_-_57045228 0.02 ENST00000371250.3
PPAP2B
phosphatidic acid phosphatase type 2B
chr9_+_79074068 0.02 ENST00000444201.2
ENST00000376730.4
GCNT1
glucosaminyl (N-acetyl) transferase 1, core 2
chr9_-_74525658 0.02 ENST00000333421.6
ABHD17B
abhydrolase domain containing 17B
chr11_-_130184555 0.02 ENST00000525842.1
ZBTB44
zinc finger and BTB domain containing 44
chr5_+_141488070 0.02 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr5_+_142149955 0.02 ENST00000378004.3
ARHGAP26
Rho GTPase activating protein 26
chr1_+_145611010 0.02 ENST00000369291.5
RNF115
ring finger protein 115
chr17_-_28618948 0.02 ENST00000261714.6
BLMH
bleomycin hydrolase
chr12_-_25403737 0.02 ENST00000256078.4
ENST00000556131.1
ENST00000311936.3
ENST00000557334.1
KRAS
Kirsten rat sarcoma viral oncogene homolog
chr10_+_70320413 0.02 ENST00000373644.4
TET1
tet methylcytosine dioxygenase 1
chr1_+_51701924 0.02 ENST00000242719.3
RNF11
ring finger protein 11
chr2_+_97481974 0.02 ENST00000377060.3
ENST00000305510.3
CNNM3
cyclin M3
chrX_-_48824793 0.02 ENST00000376477.1
KCND1
potassium voltage-gated channel, Shal-related subfamily, member 1
chr8_-_18871159 0.02 ENST00000327040.8
ENST00000440756.2
PSD3
pleckstrin and Sec7 domain containing 3
chr12_+_12764773 0.02 ENST00000228865.2
CREBL2
cAMP responsive element binding protein-like 2
chr2_+_120517174 0.02 ENST00000263708.2
PTPN4
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chr10_-_105615164 0.02 ENST00000355946.2
ENST00000369774.4
SH3PXD2A
SH3 and PX domains 2A
chr12_-_46766577 0.02 ENST00000256689.5
SLC38A2
solute carrier family 38, member 2
chr18_-_54305658 0.02 ENST00000586262.1
ENST00000217515.6
TXNL1
thioredoxin-like 1
chr6_+_155054459 0.02 ENST00000367178.3
ENST00000417268.1
ENST00000367186.4
SCAF8
SR-related CTD-associated factor 8
chrX_+_133507327 0.02 ENST00000332070.3
ENST00000394292.1
ENST00000370799.1
ENST00000416404.2
PHF6
PHD finger protein 6
chr11_-_77532050 0.02 ENST00000308488.6
RSF1
remodeling and spacing factor 1
chr1_+_178062855 0.02 ENST00000448150.3
RASAL2
RAS protein activator like 2
chr1_+_160370344 0.02 ENST00000368061.2
VANGL2
VANGL planar cell polarity protein 2
chr1_-_115259337 0.02 ENST00000369535.4
NRAS
neuroblastoma RAS viral (v-ras) oncogene homolog
chr10_-_112064665 0.02 ENST00000369603.5
SMNDC1
survival motor neuron domain containing 1
chr1_+_62208091 0.02 ENST00000316485.6
ENST00000371158.2
INADL
InaD-like (Drosophila)
chr12_+_69864129 0.02 ENST00000547219.1
ENST00000299293.2
ENST00000549921.1
ENST00000550316.1
ENST00000548154.1
ENST00000547414.1
ENST00000550389.1
ENST00000550937.1
ENST00000549092.1
ENST00000550169.1
FRS2
fibroblast growth factor receptor substrate 2
chr15_+_44719394 0.02 ENST00000260327.4
ENST00000396780.1
CTDSPL2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr4_+_128703295 0.02 ENST00000296464.4
ENST00000508549.1
HSPA4L
heat shock 70kDa protein 4-like
chr2_+_233562015 0.02 ENST00000427233.1
ENST00000373566.3
ENST00000373563.4
ENST00000428883.1
ENST00000456491.1
ENST00000409480.1
ENST00000421433.1
ENST00000425040.1
ENST00000430720.1
ENST00000409547.1
ENST00000423659.1
ENST00000409196.3
ENST00000409451.3
ENST00000429187.1
ENST00000440945.1
GIGYF2
GRB10 interacting GYF protein 2
chr6_+_114178512 0.02 ENST00000368635.4
MARCKS
myristoylated alanine-rich protein kinase C substrate
chr10_+_65281123 0.02 ENST00000298249.4
ENST00000373758.4
REEP3
receptor accessory protein 3
chr13_+_45563721 0.02 ENST00000361121.2
GPALPP1
GPALPP motifs containing 1
chr2_-_164592497 0.02 ENST00000333129.3
ENST00000409634.1
FIGN
fidgetin
chr2_+_187350883 0.02 ENST00000337859.6
ZC3H15
zinc finger CCCH-type containing 15
chr8_+_102504651 0.01 ENST00000251808.3
ENST00000521085.1
GRHL2
grainyhead-like 2 (Drosophila)
chr19_+_37960240 0.01 ENST00000388801.3
ZNF570
zinc finger protein 570
chr8_-_38853990 0.01 ENST00000456845.2
ENST00000397070.2
ENST00000517872.1
ENST00000412303.1
ENST00000456397.2
TM2D2
TM2 domain containing 2
chr17_+_60704762 0.01 ENST00000303375.5
MRC2
mannose receptor, C type 2
chr17_+_38278530 0.01 ENST00000398532.4
MSL1
male-specific lethal 1 homolog (Drosophila)
chr13_+_95254085 0.01 ENST00000376958.4
GPR180
G protein-coupled receptor 180
chr14_+_77228532 0.01 ENST00000167106.4
ENST00000554237.1
VASH1
vasohibin 1
chr17_-_46623441 0.01 ENST00000330070.4
HOXB2
homeobox B2
chr2_+_86947296 0.01 ENST00000283632.4
RMND5A
required for meiotic nuclear division 5 homolog A (S. cerevisiae)
chr16_+_70148230 0.01 ENST00000398122.3
ENST00000568530.1
PDPR
pyruvate dehydrogenase phosphatase regulatory subunit
chrX_-_63425561 0.01 ENST00000374869.3
ENST00000330258.3
AMER1
APC membrane recruitment protein 1
chr3_+_36421826 0.01 ENST00000273183.3
STAC
SH3 and cysteine rich domain
chr16_+_67063036 0.01 ENST00000290858.6
ENST00000564034.1
CBFB
core-binding factor, beta subunit
chr13_+_28813645 0.01 ENST00000282391.5
PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr17_+_57784826 0.01 ENST00000262291.4
VMP1
vacuole membrane protein 1
chr2_-_73053126 0.01 ENST00000272427.6
ENST00000410104.1
EXOC6B
exocyst complex component 6B
chr2_-_180129484 0.01 ENST00000428443.3
SESTD1
SEC14 and spectrin domains 1
chr2_-_25873079 0.01 ENST00000496972.2
DTNB
dystrobrevin, beta
chrX_-_73834449 0.01 ENST00000332687.6
ENST00000349225.2
RLIM
ring finger protein, LIM domain interacting
chr17_-_48278983 0.01 ENST00000225964.5
COL1A1
collagen, type I, alpha 1
chr8_-_82024290 0.01 ENST00000220597.4
PAG1
phosphoprotein associated with glycosphingolipid microdomains 1
chr17_+_38219063 0.01 ENST00000584985.1
ENST00000264637.4
ENST00000450525.2
THRA
thyroid hormone receptor, alpha
chr2_+_172778952 0.01 ENST00000392584.1
ENST00000264108.4
HAT1
histone acetyltransferase 1
chr10_+_88516396 0.01 ENST00000372037.3
BMPR1A
bone morphogenetic protein receptor, type IA
chr1_-_33338076 0.01 ENST00000496770.1
FNDC5
fibronectin type III domain containing 5
chr5_+_32711419 0.01 ENST00000265074.8
NPR3
natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
chr4_+_77870856 0.01 ENST00000264893.6
ENST00000502584.1
ENST00000510641.1
SEPT11
septin 11
chr17_+_56160768 0.01 ENST00000579991.2
DYNLL2
dynein, light chain, LC8-type 2
chr20_-_40247133 0.01 ENST00000373233.3
ENST00000309279.7
CHD6
chromodomain helicase DNA binding protein 6
chr1_+_110527308 0.01 ENST00000369799.5
AHCYL1
adenosylhomocysteinase-like 1
chr2_-_10952922 0.01 ENST00000272227.3
PDIA6
protein disulfide isomerase family A, member 6
chr16_-_23521710 0.01 ENST00000562117.1
ENST00000567468.1
ENST00000562944.1
ENST00000309859.4
GGA2
golgi-associated, gamma adaptin ear containing, ARF binding protein 2
chr1_-_41131326 0.01 ENST00000372684.3
RIMS3
regulating synaptic membrane exocytosis 3
chr3_+_113465866 0.01 ENST00000273398.3
ENST00000538620.1
ENST00000496747.1
ENST00000475322.1
ATP6V1A
ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
chr4_-_79860506 0.01 ENST00000295462.3
ENST00000380645.4
ENST00000512733.1
PAQR3
progestin and adipoQ receptor family member III
chr3_-_52188397 0.01 ENST00000474012.1
ENST00000296484.2
POC1A
POC1 centriolar protein A
chr5_+_54455946 0.01 ENST00000503787.1
ENST00000296734.6
ENST00000515370.1
GPX8
glutathione peroxidase 8 (putative)
chr11_+_118477144 0.01 ENST00000361417.2
PHLDB1
pleckstrin homology-like domain, family B, member 1
chr15_-_68724490 0.01 ENST00000315757.7
ENST00000423218.2
ITGA11
integrin, alpha 11
chr1_+_89990431 0.01 ENST00000330947.2
ENST00000358200.4
LRRC8B
leucine rich repeat containing 8 family, member B
chr14_-_31676964 0.01 ENST00000553700.1
HECTD1
HECT domain containing E3 ubiquitin protein ligase 1
chr6_-_33282163 0.01 ENST00000434618.2
ENST00000456592.2
TAPBP
TAP binding protein (tapasin)
chr19_-_10121144 0.01 ENST00000264828.3
COL5A3
collagen, type V, alpha 3
chr9_+_90112741 0.01 ENST00000469640.2
DAPK1
death-associated protein kinase 1
chr4_-_53525406 0.01 ENST00000451218.2
ENST00000441222.3
USP46
ubiquitin specific peptidase 46
chr2_-_217560248 0.01 ENST00000233813.4
IGFBP5
insulin-like growth factor binding protein 5
chr2_-_85839146 0.01 ENST00000306336.5
ENST00000409734.3
C2orf68
chromosome 2 open reading frame 68
chr3_+_49236910 0.01 ENST00000452691.2
ENST00000366429.2
CCDC36
coiled-coil domain containing 36
chr7_+_142985308 0.01 ENST00000310447.5
CASP2
caspase 2, apoptosis-related cysteine peptidase
chr11_+_57520715 0.01 ENST00000524630.1
ENST00000529919.1
ENST00000399039.4
ENST00000533189.1
CTNND1
catenin (cadherin-associated protein), delta 1
chr2_-_9143786 0.01 ENST00000462696.1
ENST00000305997.3
MBOAT2
membrane bound O-acyltransferase domain containing 2
chr10_-_89623194 0.01 ENST00000445946.3
KLLN
killin, p53-regulated DNA replication inhibitor
chr2_-_69870835 0.01 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr12_+_56473628 0.01 ENST00000549282.1
ENST00000549061.1
ENST00000267101.3
ERBB3
v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
chr20_+_30865429 0.01 ENST00000375712.3
KIF3B
kinesin family member 3B
chr5_-_154317740 0.01 ENST00000285873.7
GEMIN5
gem (nuclear organelle) associated protein 5
chr11_-_118661828 0.01 ENST00000264018.4
DDX6
DEAD (Asp-Glu-Ala-Asp) box helicase 6
chr2_-_118771701 0.01 ENST00000376300.2
ENST00000319432.5
CCDC93
coiled-coil domain containing 93
chr11_+_94501497 0.01 ENST00000317829.8
ENST00000317837.9
ENST00000433060.2
AMOTL1
angiomotin like 1
chr10_+_76871454 0.00 ENST00000372687.4
SAMD8
sterile alpha motif domain containing 8
chr3_-_125094093 0.00 ENST00000484491.1
ENST00000492394.1
ENST00000471196.1
ENST00000468369.1
ENST00000544464.1
ENST00000485866.1
ENST00000360647.4
ZNF148
zinc finger protein 148
chr12_+_60083118 0.00 ENST00000261187.4
ENST00000543448.1
SLC16A7
solute carrier family 16 (monocarboxylate transporter), member 7
chr4_+_99916765 0.00 ENST00000296411.6
METAP1
methionyl aminopeptidase 1
chr17_-_61920280 0.00 ENST00000448276.2
ENST00000577990.1
SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
chr14_-_31495569 0.00 ENST00000357479.5
ENST00000355683.5
STRN3
striatin, calmodulin binding protein 3
chr19_-_38806560 0.00 ENST00000591755.1
ENST00000337679.8
ENST00000339413.6
YIF1B
Yip1 interacting factor homolog B (S. cerevisiae)
chrX_+_9983602 0.00 ENST00000380861.4
WWC3
WWC family member 3
chr2_-_96931679 0.00 ENST00000258439.3
ENST00000432959.1
TMEM127
transmembrane protein 127
chr12_-_31479045 0.00 ENST00000539409.1
ENST00000395766.1
FAM60A
family with sequence similarity 60, member A
chr19_-_47128294 0.00 ENST00000596260.1
ENST00000597185.1
ENST00000598865.1
ENST00000594275.1
ENST00000291294.2
PTGIR
prostaglandin I2 (prostacyclin) receptor (IP)
chr1_+_110577229 0.00 ENST00000369795.3
ENST00000369794.2
STRIP1
striatin interacting protein 1
chr1_-_155532484 0.00 ENST00000368346.3
ENST00000548830.1
ASH1L
ash1 (absent, small, or homeotic)-like (Drosophila)
chr8_-_116681221 0.00 ENST00000395715.3
TRPS1
trichorhinophalangeal syndrome I
chr5_+_141303373 0.00 ENST00000432126.2
ENST00000194118.4
KIAA0141
KIAA0141
chr5_+_145583156 0.00 ENST00000265271.5
RBM27
RNA binding motif protein 27
chr3_+_97483366 0.00 ENST00000463745.1
ENST00000462412.1
ARL6
ADP-ribosylation factor-like 6
chr1_+_39456895 0.00 ENST00000432648.3
ENST00000446189.2
ENST00000372984.4
AKIRIN1
akirin 1
chr19_-_46234119 0.00 ENST00000317683.3
FBXO46
F-box protein 46
chr9_-_20622478 0.00 ENST00000355930.6
ENST00000380338.4
MLLT3
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
chr11_-_9336234 0.00 ENST00000528080.1
TMEM41B
transmembrane protein 41B
chr6_-_52441713 0.00 ENST00000182527.3
TRAM2
translocation associated membrane protein 2
chr3_+_183873098 0.00 ENST00000313143.3
DVL3
dishevelled segment polarity protein 3
chr22_-_22221900 0.00 ENST00000215832.6
ENST00000398822.3
MAPK1
mitogen-activated protein kinase 1
chr20_-_50159198 0.00 ENST00000371564.3
ENST00000396009.3
ENST00000610033.1
NFATC2
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
chr15_+_77287426 0.00 ENST00000558012.1
ENST00000267939.5
ENST00000379595.3
PSTPIP1
proline-serine-threonine phosphatase interacting protein 1
chr5_-_38595498 0.00 ENST00000263409.4
LIFR
leukemia inhibitory factor receptor alpha
chr6_+_43265992 0.00 ENST00000449231.1
ENST00000372589.3
ENST00000372585.5
SLC22A7
solute carrier family 22 (organic anion transporter), member 7
chrX_+_152599604 0.00 ENST00000370251.3
ENST00000421401.3
ZNF275
zinc finger protein 275
chr2_-_206950781 0.00 ENST00000403263.1
INO80D
INO80 complex subunit D

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAUGA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0070236 negative regulation of activation-induced cell death of T cells(GO:0070236)
0.0 0.1 GO:0042985 negative regulation of amyloid precursor protein biosynthetic process(GO:0042985)
0.0 0.0 GO:0034059 response to anoxia(GO:0034059)
0.0 0.1 GO:1903352 L-ornithine transmembrane transport(GO:1903352)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034676 integrin alpha6-beta4 complex(GO:0034676)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0043426 MRF binding(GO:0043426)
0.0 0.1 GO:0060001 minus-end directed microfilament motor activity(GO:0060001)
0.0 0.1 GO:0000064 L-ornithine transmembrane transporter activity(GO:0000064)
0.0 0.1 GO:0035368 selenocysteine insertion sequence binding(GO:0035368)