NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
| Motif name | Z-value | Associated genes | Profile | Logo |
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| IRF2_STAT2_IRF8_IRF1 | 5.02 |
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| PLAGL1 | 4.00 |
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| PATZ1_KLF4 | 3.73 |
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| RELA | 3.58 |
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| IRF9 | 3.25 |
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| ESRRA_ESR2 | 3.16 |
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| IKZF1 | 3.09 |
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| MXI1_MYC_MYCN | 3.07 |
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| ZNF711_TFAP2A_TFAP2D | 2.91 |
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| HIC2 | 2.83 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
| Sample name | Condition | Replicate/Batch |
|---|---|---|
| SARS004-CoV2-1_S4 | ||
| SARS004-CoV2-2_S5 | ||
| SARS004-CoV2-3_S6 | ||
| SARS004-mock-1_S1 | ||
| SARS004-mock-2_S2 | ||
| SARS004-mock-3_S3 |