GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Meis3 | mm39_v1_chr7_+_15909283_15909362 | -0.75 | 1.5e-07 | Click! |
Tgif1 | mm39_v1_chr17_-_71160477_71160543 | -0.54 | 6.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_39275518 Show fit | 31.84 |
ENSMUST00000003137.15
|
cytochrome P450, family 2, subfamily c, polypeptide 29 |
|
chr7_-_97066937 Show fit | 29.27 |
ENSMUST00000043077.8
|
thyroid hormone responsive |
|
chr2_+_155359868 Show fit | 20.95 |
ENSMUST00000029135.15
ENSMUST00000065973.9 |
acyl-CoA synthetase short-chain family member 2 |
|
chr2_+_155360015 Show fit | 18.65 |
ENSMUST00000103142.12
|
acyl-CoA synthetase short-chain family member 2 |
|
chr7_-_30623592 Show fit | 17.91 |
ENSMUST00000217812.2
ENSMUST00000074671.9 |
hepcidin antimicrobial peptide 2 |
|
chr11_-_5900019 Show fit | 17.55 |
ENSMUST00000102920.4
|
glucokinase |
|
chr5_-_87485023 Show fit | 17.26 |
ENSMUST00000031195.3
|
UDP glucuronosyltransferase 2 family, polypeptide A3 |
|
chr15_+_6474808 Show fit | 13.88 |
ENSMUST00000022749.17
ENSMUST00000239466.2 |
complement component 9 |
|
chrX_+_10118544 Show fit | 13.39 |
ENSMUST00000049910.13
|
ornithine transcarbamylase |
|
chr2_+_102536701 Show fit | 12.03 |
ENSMUST00000123759.8
ENSMUST00000005220.11 ENSMUST00000111212.8 |
solute carrier family 1 (glial high affinity glutamate transporter), member 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
13.2 | 39.6 | GO:0019413 | acetate biosynthetic process(GO:0019413) acetyl-CoA biosynthetic process from acetate(GO:0019427) propionate biosynthetic process(GO:0019542) |
5.1 | 35.9 | GO:1904075 | regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075) |
1.0 | 35.0 | GO:0010866 | regulation of triglyceride biosynthetic process(GO:0010866) |
0.9 | 29.5 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
2.1 | 29.0 | GO:0052695 | cellular glucuronidation(GO:0052695) |
1.3 | 28.3 | GO:0045717 | negative regulation of fatty acid biosynthetic process(GO:0045717) |
1.8 | 26.5 | GO:0015747 | urate transport(GO:0015747) |
8.2 | 24.7 | GO:0042450 | arginine biosynthetic process via ornithine(GO:0042450) |
4.8 | 24.1 | GO:0009730 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
1.5 | 22.6 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 121.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.2 | 61.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 57.1 | GO:0005739 | mitochondrion(GO:0005739) |
0.1 | 52.7 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
3.6 | 35.9 | GO:0042567 | insulin-like growth factor ternary complex(GO:0042567) |
3.6 | 32.0 | GO:0005579 | membrane attack complex(GO:0005579) |
0.4 | 23.2 | GO:0060170 | ciliary membrane(GO:0060170) |
0.6 | 22.8 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
1.1 | 21.0 | GO:0045180 | basal cortex(GO:0045180) |
2.6 | 20.6 | GO:0032937 | SREBP-SCAP-Insig complex(GO:0032937) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 78.7 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
7.9 | 39.6 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
0.7 | 33.6 | GO:0005159 | insulin-like growth factor receptor binding(GO:0005159) |
5.0 | 30.2 | GO:0033695 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
1.7 | 29.1 | GO:1901702 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
6.2 | 24.7 | GO:0016743 | carboxyl- or carbamoyltransferase activity(GO:0016743) |
2.2 | 22.0 | GO:0004396 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) |
4.3 | 21.3 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
0.9 | 20.3 | GO:0015125 | bile acid transmembrane transporter activity(GO:0015125) |
0.9 | 18.6 | GO:0016832 | aldehyde-lyase activity(GO:0016832) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 41.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
1.0 | 40.3 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.6 | 38.1 | PID IGF1 PATHWAY | IGF1 pathway |
0.3 | 17.0 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.1 | 9.1 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.7 | 7.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.2 | 6.0 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 6.0 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.1 | 5.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 5.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.1 | 56.0 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.2 | 38.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.3 | 34.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
1.0 | 32.3 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.7 | 27.6 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.8 | 27.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.8 | 24.5 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
0.3 | 23.9 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
0.5 | 22.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
1.2 | 17.4 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |