GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Stat2 | mm39_v1_chr10_+_128106414_128106446 | 0.80 | 6.1e-09 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_41498716 Show fit | 11.84 |
ENSMUST00000070380.5
|
protease, serine 2 |
|
chr19_+_3372296 Show fit | 9.04 |
ENSMUST00000237938.2
|
carnitine palmitoyltransferase 1a, liver |
|
chr16_+_36041838 Show fit | 6.58 |
ENSMUST00000187183.7
ENSMUST00000187742.7 |
cystatin A family member 2 |
|
chr12_+_104372962 Show fit | 6.57 |
ENSMUST00000021506.6
|
serine (or cysteine) peptidase inhibitor, clade A, member 3N |
|
chr12_-_26506422 Show fit | 5.80 |
ENSMUST00000020970.10
|
radical S-adenosyl methionine domain containing 2 |
|
chr18_+_60515755 Show fit | 5.70 |
ENSMUST00000237185.2
|
interferon inducible GTPase 1 |
|
chr14_+_40827108 Show fit | 5.46 |
ENSMUST00000224514.2
|
methionine adenosyltransferase I, alpha |
|
chr19_+_34560922 Show fit | 5.37 |
ENSMUST00000102825.4
|
interferon-induced protein with tetratricopeptide repeats 3 |
|
chr11_-_48883053 Show fit | 5.29 |
ENSMUST00000059930.3
ENSMUST00000068063.4 |
predicted gene 12185 T cell specific GTPase 1 |
|
chr6_+_121222865 Show fit | 5.19 |
ENSMUST00000032198.11
|
ubiquitin specific peptidase 18 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 29.9 | GO:0035458 | cellular response to interferon-beta(GO:0035458) |
4.2 | 12.7 | GO:0009087 | methionine catabolic process(GO:0009087) |
0.6 | 11.8 | GO:0031000 | response to caffeine(GO:0031000) |
0.6 | 9.0 | GO:0032000 | positive regulation of fatty acid beta-oxidation(GO:0032000) |
0.1 | 6.6 | GO:0006953 | acute-phase response(GO:0006953) |
0.2 | 5.9 | GO:0046688 | copper ion transport(GO:0006825) response to copper ion(GO:0046688) |
1.4 | 5.8 | GO:0034165 | positive regulation of toll-like receptor 9 signaling pathway(GO:0034165) |
1.8 | 5.4 | GO:0034240 | negative regulation of macrophage fusion(GO:0034240) |
0.2 | 5.2 | GO:0035634 | response to stilbenoid(GO:0035634) |
1.3 | 5.1 | GO:2000503 | positive regulation of natural killer cell chemotaxis(GO:2000503) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.9 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 12.6 | GO:0072562 | blood microparticle(GO:0072562) |
0.1 | 12.2 | GO:0016363 | nuclear matrix(GO:0016363) |
0.8 | 12.1 | GO:0020003 | symbiont-containing vacuole(GO:0020003) |
0.1 | 10.8 | GO:0016605 | PML body(GO:0016605) |
0.3 | 9.0 | GO:0031307 | integral component of mitochondrial outer membrane(GO:0031307) |
0.1 | 6.2 | GO:0005811 | lipid particle(GO:0005811) |
0.1 | 5.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.5 | 4.2 | GO:0042825 | TAP complex(GO:0042825) |
0.3 | 3.9 | GO:0043020 | NADPH oxidase complex(GO:0043020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.4 | GO:0001047 | core promoter binding(GO:0001047) |
0.0 | 13.3 | GO:0003924 | GTPase activity(GO:0003924) |
3.2 | 12.7 | GO:0004478 | methionine adenosyltransferase activity(GO:0004478) |
0.1 | 12.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 9.6 | GO:0004386 | helicase activity(GO:0004386) |
0.8 | 9.4 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
3.0 | 9.0 | GO:1990698 | palmitoleoyltransferase activity(GO:1990698) |
0.0 | 6.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.5 | 5.9 | GO:0004322 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.1 | 5.8 | GO:0051539 | 4 iron, 4 sulfur cluster binding(GO:0051539) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.7 | 7.8 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.1 | 7.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 6.4 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 5.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 4.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 3.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 3.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 3.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 2.9 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 13.0 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.4 | 12.7 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.8 | 11.8 | REACTOME DEFENSINS | Genes involved in Defensins |
0.4 | 10.7 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.3 | 9.0 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.2 | 8.3 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.2 | 8.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.3 | 6.6 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 5.9 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.0 | 5.0 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |