GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Snai1 | mm39_v1_chr2_+_167380112_167380130 | 0.37 | 2.7e-02 | Click! |
Snai2 | mm39_v1_chr16_+_14523696_14523722 | -0.37 | 2.7e-02 | Click! |
Zeb1 | mm39_v1_chr18_+_5593566_5593602 | -0.34 | 4.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_137157824 Show fit | 17.03 |
ENSMUST00000102522.5
|
chymotrypsin-like elastase family, member 3B |
|
chr2_-_28453374 Show fit | 12.22 |
ENSMUST00000028161.6
|
carboxyl ester lipase |
|
chr6_-_41012435 Show fit | 7.00 |
ENSMUST00000031931.6
|
RIKEN cDNA 2210010C04 gene |
|
chr8_-_106660470 Show fit | 6.64 |
ENSMUST00000034368.8
|
chymotrypsin-like |
|
chr13_-_63036096 Show fit | 5.84 |
ENSMUST00000092888.11
|
fructose bisphosphatase 1 |
|
chr9_+_46180362 Show fit | 5.72 |
ENSMUST00000214202.2
ENSMUST00000215458.2 ENSMUST00000215187.2 ENSMUST00000213878.2 ENSMUST00000034584.4 |
apolipoprotein A-V |
|
chr6_+_30639217 Show fit | 5.30 |
ENSMUST00000031806.10
|
carboxypeptidase A1, pancreatic |
|
chr4_-_137137088 Show fit | 5.26 |
ENSMUST00000024200.7
|
chymotrypsin-like elastase family, member 3A |
|
chr7_-_126651847 Show fit | 5.18 |
ENSMUST00000205424.2
|
zymogen granule protein 16 |
|
chr8_-_112417633 Show fit | 5.08 |
ENSMUST00000034435.7
|
chymotrypsinogen B1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 30.7 | GO:0007586 | digestion(GO:0007586) |
1.3 | 21.2 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.1 | 15.2 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
0.1 | 14.2 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.3 | 10.8 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
1.1 | 7.9 | GO:0001561 | fatty acid alpha-oxidation(GO:0001561) |
1.8 | 7.1 | GO:0010901 | regulation of very-low-density lipoprotein particle remodeling(GO:0010901) |
0.6 | 6.8 | GO:0015868 | purine ribonucleotide transport(GO:0015868) |
2.2 | 6.6 | GO:0009087 | methionine catabolic process(GO:0009087) |
0.8 | 6.5 | GO:0061502 | early endosome to recycling endosome transport(GO:0061502) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 147.3 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 96.1 | GO:0031224 | intrinsic component of membrane(GO:0031224) |
0.1 | 28.8 | GO:0072562 | blood microparticle(GO:0072562) |
0.6 | 22.4 | GO:0042588 | zymogen granule(GO:0042588) |
0.6 | 12.7 | GO:0042627 | chylomicron(GO:0042627) |
0.1 | 12.4 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
0.3 | 11.8 | GO:0016327 | apicolateral plasma membrane(GO:0016327) |
0.0 | 10.3 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.3 | 6.6 | GO:0032426 | stereocilium tip(GO:0032426) |
0.6 | 6.3 | GO:0019815 | B cell receptor complex(GO:0019815) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 87.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 17.2 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.1 | 17.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.4 | 13.5 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.0 | 12.9 | GO:0000982 | transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0000982) |
4.1 | 12.2 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.1 | 11.4 | GO:0005179 | hormone activity(GO:0005179) |
0.4 | 11.0 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.4 | 9.2 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.4 | 9.1 | GO:0003841 | 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 58.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 26.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 13.7 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.1 | 11.1 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
0.0 | 8.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 8.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.4 | 7.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.2 | 7.4 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 7.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 7.0 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 22.7 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.5 | 14.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 13.2 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.4 | 13.1 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.2 | 11.0 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.3 | 10.8 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.2 | 10.8 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.4 | 10.6 | REACTOME P38MAPK EVENTS | Genes involved in p38MAPK events |
0.1 | 9.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.6 | 8.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |